data_4R7I # _model_server_result.job_id DfydAwtyQTnHYJpPl2wleQ _model_server_result.datetime_utc '2025-01-08 03:07:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4R7I # _exptl.entry_id 4R7I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 493.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R7I _cell.length_a 63.13 _cell.length_b 63.13 _cell.length_c 183.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 183.46 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H31 N7 O' _chem_comp.formula_weight 493.603 _chem_comp.id STI _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms STI-571;IMATINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 STI doub 290 n y C1 C2 STI sing 291 n y C1 H11 STI sing 292 n n C6 C5 STI sing 293 n y C6 H61 STI sing 294 n n C5 C4 STI doub 295 n y C5 C7 STI sing 296 n y C4 N3 STI sing 297 n y C4 H41 STI sing 298 n n N3 C2 STI doub 299 n y C2 H21 STI sing 300 n n C7 C12 STI doub 301 n y C7 N8 STI sing 302 n y C12 C11 STI sing 303 n y C12 H121 STI sing 304 n n C11 N10 STI doub 305 n y C11 H111 STI sing 306 n n N10 C9 STI sing 307 n y C9 N8 STI doub 308 n y C9 N13 STI sing 309 n n N13 C14 STI sing 310 n n N13 H131 STI sing 311 n n C14 C19 STI doub 312 n y C14 C15 STI sing 313 n y C19 C18 STI sing 314 n y C19 C20 STI sing 315 n n C18 C17 STI doub 316 n y C18 H181 STI sing 317 n n C17 C16 STI sing 318 n y C17 H171 STI sing 319 n n C16 C15 STI doub 320 n y C16 N21 STI sing 321 n n C15 H151 STI sing 322 n n N21 C22 STI sing 323 n n N21 H211 STI sing 324 n n C22 C23 STI sing 325 n n C22 O29 STI doub 326 n n C23 C25 STI doub 327 n y C23 C29 STI sing 328 n y C25 C26 STI sing 329 n y C25 H251 STI sing 330 n n C26 C27 STI doub 331 n y C26 H261 STI sing 332 n n C27 C28 STI sing 333 n y C27 C46 STI sing 334 n n C28 C29 STI doub 335 n y C28 H281 STI sing 336 n n C29 H291 STI sing 337 n n C46 N48 STI sing 338 n n C46 H461 STI sing 339 n n C46 H462 STI sing 340 n n N48 C53 STI sing 341 n n N48 C49 STI sing 342 n n C53 C52 STI sing 343 n n C53 H531 STI sing 344 n n C53 H532 STI sing 345 n n C52 N51 STI sing 346 n n C52 H521 STI sing 347 n n C52 H522 STI sing 348 n n N51 C54 STI sing 349 n n N51 C50 STI sing 350 n n C54 H541 STI sing 351 n n C54 H542 STI sing 352 n n C54 H543 STI sing 353 n n C50 C49 STI sing 354 n n C50 H501 STI sing 355 n n C50 H502 STI sing 356 n n C49 H491 STI sing 357 n n C49 H492 STI sing 358 n n C20 H201 STI sing 359 n n C20 H202 STI sing 360 n n C20 H203 STI sing 361 n n # _atom_sites.entry_id 4R7I _atom_sites.fract_transf_matrix[1][1] 0.01584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STI A 1 1001 1 STI P30 . C 3 HOH A 1 1101 1 HOH HOH . C 3 HOH A 2 1102 2 HOH HOH . C 3 HOH A 3 1103 3 HOH HOH . C 3 HOH A 4 1104 4 HOH HOH . C 3 HOH A 5 1105 5 HOH HOH . C 3 HOH A 6 1106 6 HOH HOH . C 3 HOH A 7 1107 7 HOH HOH . C 3 HOH A 8 1108 8 HOH HOH . C 3 HOH A 9 1109 9 HOH HOH . C 3 HOH A 10 1110 10 HOH HOH . C 3 HOH A 11 1111 11 HOH HOH . C 3 HOH A 12 1112 12 HOH HOH . C 3 HOH A 13 1113 13 HOH HOH . C 3 HOH A 14 1114 14 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 16 HOH HOH . C 3 HOH A 17 1117 17 HOH HOH . C 3 HOH A 18 1118 18 HOH HOH . C 3 HOH A 19 1119 19 HOH HOH . C 3 HOH A 20 1120 20 HOH HOH . C 3 HOH A 21 1121 21 HOH HOH . C 3 HOH A 22 1122 22 HOH HOH . C 3 HOH A 23 1123 23 HOH HOH . C 3 HOH A 24 1124 24 HOH HOH . C 3 HOH A 25 1125 25 HOH HOH . C 3 HOH A 26 1126 26 HOH HOH . C 3 HOH A 27 1127 27 HOH HOH . C 3 HOH A 28 1128 28 HOH HOH . C 3 HOH A 29 1129 30 HOH HOH . C 3 HOH A 30 1130 31 HOH HOH . C 3 HOH A 31 1131 32 HOH HOH . C 3 HOH A 32 1132 33 HOH HOH . C 3 HOH A 33 1133 34 HOH HOH . C 3 HOH A 34 1134 35 HOH HOH . C 3 HOH A 35 1135 36 HOH HOH . C 3 HOH A 36 1136 37 HOH HOH . C 3 HOH A 37 1137 38 HOH HOH . C 3 HOH A 38 1138 39 HOH HOH . C 3 HOH A 39 1139 40 HOH HOH . C 3 HOH A 40 1140 41 HOH HOH . C 3 HOH A 41 1141 42 HOH HOH . C 3 HOH A 42 1142 44 HOH HOH . C 3 HOH A 43 1143 45 HOH HOH . C 3 HOH A 44 1144 46 HOH HOH . C 3 HOH A 45 1145 47 HOH HOH . C 3 HOH A 46 1146 48 HOH HOH . C 3 HOH A 47 1147 49 HOH HOH . C 3 HOH A 48 1148 50 HOH HOH . C 3 HOH A 49 1149 51 HOH HOH . C 3 HOH A 50 1150 52 HOH HOH . C 3 HOH A 51 1151 53 HOH HOH . C 3 HOH A 52 1152 54 HOH HOH . C 3 HOH A 53 1153 55 HOH HOH . C 3 HOH A 54 1154 56 HOH HOH . C 3 HOH A 55 1155 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STI . . . B 2 29.284 13.4 73.194 1 48.41 ? C1 STI 1001 A 1 HETATM 2 C C6 STI . . . B 2 30.479 14.024 73.458 1 49.78 ? C6 STI 1001 A 1 HETATM 3 C C5 STI . . . B 2 31.682 13.425 73.133 1 51.21 ? C5 STI 1001 A 1 HETATM 4 C C4 STI . . . B 2 31.6 12.185 72.552 1 50.06 ? C4 STI 1001 A 1 HETATM 5 N N3 STI . . . B 2 30.468 11.546 72.275 1 49.66 ? N3 STI 1001 A 1 HETATM 6 C C2 STI . . . B 2 29.345 12.175 72.607 1 49.84 ? C2 STI 1001 A 1 HETATM 7 C C7 STI . . . B 2 32.972 14.031 73.398 1 52.4 ? C7 STI 1001 A 1 HETATM 8 C C12 STI . . . B 2 33.153 15.23 74.012 1 52.42 ? C12 STI 1001 A 1 HETATM 9 C C11 STI . . . B 2 34.442 15.628 74.176 1 51.96 ? C11 STI 1001 A 1 HETATM 10 N N10 STI . . . B 2 35.49 14.923 73.794 1 51.94 ? N10 STI 1001 A 1 HETATM 11 C C9 STI . . . B 2 35.233 13.763 73.211 1 52.93 ? C9 STI 1001 A 1 HETATM 12 N N8 STI . . . B 2 34.007 13.298 73.003 1 53.1 ? N8 STI 1001 A 1 HETATM 13 N N13 STI . . . B 2 36.258 12.948 72.777 1 54.37 ? N13 STI 1001 A 1 HETATM 14 C C14 STI . . . B 2 37.632 13.174 72.827 1 56.5 ? C14 STI 1001 A 1 HETATM 15 C C19 STI . . . B 2 38.223 13.662 71.651 1 56.68 ? C19 STI 1001 A 1 HETATM 16 C C18 STI . . . B 2 39.582 13.935 71.614 1 56.2 ? C18 STI 1001 A 1 HETATM 17 C C17 STI . . . B 2 40.35 13.733 72.732 1 54.54 ? C17 STI 1001 A 1 HETATM 18 C C16 STI . . . B 2 39.785 13.248 73.899 1 55.65 ? C16 STI 1001 A 1 HETATM 19 C C15 STI . . . B 2 38.43 12.972 73.959 1 56.53 ? C15 STI 1001 A 1 HETATM 20 N N21 STI . . . B 2 40.656 13.095 74.966 1 53.23 ? N21 STI 1001 A 1 HETATM 21 C C22 STI . . . B 2 40.445 12.307 76.032 1 51.75 ? C22 STI 1001 A 1 HETATM 22 C C23 STI . . . B 2 41.607 12.195 76.931 1 53.33 ? C23 STI 1001 A 1 HETATM 23 C C25 STI . . . B 2 42.779 12.877 76.663 1 53.78 ? C25 STI 1001 A 1 HETATM 24 C C26 STI . . . B 2 43.862 12.766 77.501 1 53.65 ? C26 STI 1001 A 1 HETATM 25 C C27 STI . . . B 2 43.792 11.975 78.628 1 54.68 ? C27 STI 1001 A 1 HETATM 26 C C28 STI . . . B 2 42.623 11.285 78.903 1 55.05 ? C28 STI 1001 A 1 HETATM 27 C C29 STI . . . B 2 41.532 11.396 78.058 1 54.28 ? C29 STI 1001 A 1 HETATM 28 C C46 STI . . . B 2 44.976 11.889 79.531 1 54.96 ? C46 STI 1001 A 1 HETATM 29 N N48 STI . . . B 2 45.504 13.192 79.926 1 52.11 ? N48 STI 1001 A 1 HETATM 30 C C53 STI . . . B 2 46.791 13.048 80.596 1 50.31 ? C53 STI 1001 A 1 HETATM 31 C C52 STI . . . B 2 47.332 14.398 81.041 1 47.77 ? C52 STI 1001 A 1 HETATM 32 N N51 STI . . . B 2 46.335 15.155 81.774 1 48.62 ? N51 STI 1001 A 1 HETATM 33 C C54 STI . . . B 2 46.819 16.458 82.163 1 47.23 ? C54 STI 1001 A 1 HETATM 34 C C50 STI . . . B 2 45.066 15.262 81.079 1 48.31 ? C50 STI 1001 A 1 HETATM 35 C C49 STI . . . B 2 44.541 13.872 80.766 1 48.69 ? C49 STI 1001 A 1 HETATM 36 O O29 STI . . . B 2 39.43 11.719 76.254 1 51.68 ? O29 STI 1001 A 1 HETATM 37 C C20 STI . . . B 2 37.404 13.898 70.424 1 54.26 ? C20 STI 1001 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #