data_4R7J # _model_server_result.job_id bcVSUFbWG7BaMCjD33iRHw _model_server_result.datetime_utc '2024-11-29 04:20:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":506}' # _entry.id 4R7J # _exptl.entry_id 4R7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R7J _cell.length_a 119.413 _cell.length_b 119.413 _cell.length_c 69.394 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 119.413 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 59.7065 -59.7065 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 59.7065 59.7065 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 196 A GLY 296 1_555 I K K . A K 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc2 A O GLY 198 A GLY 298 1_555 I K K . A K 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc3 A O CYS 201 A CYS 301 1_555 I K K . A K 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc4 I K K . A K 507 1_555 J O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.26 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 288 n n C1 H11 MPD sing 289 n n C1 H12 MPD sing 290 n n C1 H13 MPD sing 291 n n C2 O2 MPD sing 292 n n C2 CM MPD sing 293 n n C2 C3 MPD sing 294 n n O2 HO2 MPD sing 295 n n CM HM1 MPD sing 296 n n CM HM2 MPD sing 297 n n CM HM3 MPD sing 298 n n C3 C4 MPD sing 299 n n C3 H31 MPD sing 300 n n C3 H32 MPD sing 301 n n C4 O4 MPD sing 302 n n C4 C5 MPD sing 303 n n C4 H4 MPD sing 304 n n O4 HO4 MPD sing 305 n n C5 H51 MPD sing 306 n n C5 H52 MPD sing 307 n n C5 H53 MPD sing 308 n n # _atom_sites.entry_id 4R7J _atom_sites.fract_transf_matrix[1][1] 0.008374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 500 500 IMP IMP . C 3 CL A 1 501 501 CL CL . D 4 GOL A 1 502 502 GOL GOL . E 5 SO4 A 1 503 503 SO4 SO4 . F 5 SO4 A 1 504 504 SO4 SO4 . G 5 SO4 A 1 505 505 SO4 SO4 . H 6 MPD A 1 506 506 MPD MPD . I 7 K A 1 507 507 K K . J 8 HOH A 1 601 1 HOH HOH . J 8 HOH A 2 602 2 HOH HOH . J 8 HOH A 3 603 3 HOH HOH . J 8 HOH A 4 604 4 HOH HOH . J 8 HOH A 5 605 5 HOH HOH . J 8 HOH A 6 606 6 HOH HOH . J 8 HOH A 7 607 7 HOH HOH . J 8 HOH A 8 608 8 HOH HOH . J 8 HOH A 9 609 9 HOH HOH . J 8 HOH A 10 610 10 HOH HOH . J 8 HOH A 11 611 11 HOH HOH . J 8 HOH A 12 612 12 HOH HOH . J 8 HOH A 13 613 13 HOH HOH . J 8 HOH A 14 614 14 HOH HOH . J 8 HOH A 15 615 15 HOH HOH . J 8 HOH A 16 616 16 HOH HOH . J 8 HOH A 17 617 17 HOH HOH . J 8 HOH A 18 618 18 HOH HOH . J 8 HOH A 19 619 19 HOH HOH . J 8 HOH A 20 620 20 HOH HOH . J 8 HOH A 21 621 21 HOH HOH . J 8 HOH A 22 622 22 HOH HOH . J 8 HOH A 23 623 23 HOH HOH . J 8 HOH A 24 624 24 HOH HOH . J 8 HOH A 25 625 25 HOH HOH . J 8 HOH A 26 626 26 HOH HOH . J 8 HOH A 27 627 27 HOH HOH . J 8 HOH A 28 628 28 HOH HOH . J 8 HOH A 29 629 29 HOH HOH . J 8 HOH A 30 630 30 HOH HOH . J 8 HOH A 31 631 31 HOH HOH . J 8 HOH A 32 632 32 HOH HOH . J 8 HOH A 33 633 33 HOH HOH . J 8 HOH A 34 634 34 HOH HOH . J 8 HOH A 35 635 35 HOH HOH . J 8 HOH A 36 636 36 HOH HOH . J 8 HOH A 37 637 37 HOH HOH . J 8 HOH A 38 638 38 HOH HOH . J 8 HOH A 39 639 39 HOH HOH . J 8 HOH A 40 640 40 HOH HOH . J 8 HOH A 41 641 41 HOH HOH . J 8 HOH A 42 642 42 HOH HOH . J 8 HOH A 43 643 43 HOH HOH . J 8 HOH A 44 644 44 HOH HOH . J 8 HOH A 45 645 45 HOH HOH . J 8 HOH A 46 646 46 HOH HOH . J 8 HOH A 47 647 47 HOH HOH . J 8 HOH A 48 648 48 HOH HOH . J 8 HOH A 49 649 49 HOH HOH . J 8 HOH A 50 650 50 HOH HOH . J 8 HOH A 51 651 51 HOH HOH . J 8 HOH A 52 652 52 HOH HOH . J 8 HOH A 53 653 53 HOH HOH . J 8 HOH A 54 654 54 HOH HOH . J 8 HOH A 55 655 55 HOH HOH . J 8 HOH A 56 656 56 HOH HOH . J 8 HOH A 57 657 57 HOH HOH . J 8 HOH A 58 658 58 HOH HOH . J 8 HOH A 59 659 59 HOH HOH . J 8 HOH A 60 660 60 HOH HOH . J 8 HOH A 61 661 61 HOH HOH . J 8 HOH A 62 662 62 HOH HOH . J 8 HOH A 63 663 63 HOH HOH . J 8 HOH A 64 664 64 HOH HOH . J 8 HOH A 65 665 65 HOH HOH . J 8 HOH A 66 666 66 HOH HOH . J 8 HOH A 67 667 67 HOH HOH . J 8 HOH A 68 668 68 HOH HOH . J 8 HOH A 69 669 69 HOH HOH . J 8 HOH A 70 670 70 HOH HOH . J 8 HOH A 71 671 71 HOH HOH . J 8 HOH A 72 672 72 HOH HOH . J 8 HOH A 73 673 73 HOH HOH . J 8 HOH A 74 674 74 HOH HOH . J 8 HOH A 75 675 75 HOH HOH . J 8 HOH A 76 676 76 HOH HOH . J 8 HOH A 77 677 77 HOH HOH . J 8 HOH A 78 678 78 HOH HOH . J 8 HOH A 79 679 79 HOH HOH . J 8 HOH A 80 680 80 HOH HOH . J 8 HOH A 81 681 81 HOH HOH . J 8 HOH A 82 682 82 HOH HOH . J 8 HOH A 83 683 83 HOH HOH . J 8 HOH A 84 684 84 HOH HOH . J 8 HOH A 85 685 85 HOH HOH . J 8 HOH A 86 686 86 HOH HOH . J 8 HOH A 87 687 87 HOH HOH . J 8 HOH A 88 688 88 HOH HOH . J 8 HOH A 89 689 89 HOH HOH . J 8 HOH A 90 690 90 HOH HOH . J 8 HOH A 91 691 91 HOH HOH . J 8 HOH A 92 692 92 HOH HOH . J 8 HOH A 93 693 93 HOH HOH . J 8 HOH A 94 694 94 HOH HOH . J 8 HOH A 95 695 95 HOH HOH . J 8 HOH A 96 696 96 HOH HOH . J 8 HOH A 97 697 97 HOH HOH . J 8 HOH A 98 698 98 HOH HOH . J 8 HOH A 99 699 99 HOH HOH . J 8 HOH A 100 700 100 HOH HOH . J 8 HOH A 101 701 101 HOH HOH . J 8 HOH A 102 702 102 HOH HOH . J 8 HOH A 103 703 103 HOH HOH . J 8 HOH A 104 704 104 HOH HOH . J 8 HOH A 105 705 105 HOH HOH . J 8 HOH A 106 706 106 HOH HOH . J 8 HOH A 107 707 107 HOH HOH . J 8 HOH A 108 708 108 HOH HOH . J 8 HOH A 109 709 109 HOH HOH . J 8 HOH A 110 710 110 HOH HOH . J 8 HOH A 111 711 111 HOH HOH . J 8 HOH A 112 712 112 HOH HOH . J 8 HOH A 113 713 113 HOH HOH . J 8 HOH A 114 714 114 HOH HOH . J 8 HOH A 115 715 115 HOH HOH . J 8 HOH A 116 716 116 HOH HOH . J 8 HOH A 117 717 117 HOH HOH . J 8 HOH A 118 718 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 6 27.234 30.179 0.997 1 72.35 ? C1 MPD 506 A 1 HETATM 2 C C2 MPD . . . H 6 27.716 30.43 2.421 1 74.16 ? C2 MPD 506 A 1 HETATM 3 O O2 MPD . . . H 6 26.586 30.259 3.313 1 75.99 ? O2 MPD 506 A 1 HETATM 4 C CM MPD . . . H 6 28.788 29.418 2.804 1 75.9 ? CM MPD 506 A 1 HETATM 5 C C3 MPD . . . H 6 28.246 31.854 2.565 1 76.32 ? C3 MPD 506 A 1 HETATM 6 C C4 MPD . . . H 6 27.62 32.564 3.762 1 78.48 ? C4 MPD 506 A 1 HETATM 7 O O4 MPD . . . H 6 28.594 33.349 4.417 1 78.74 ? O4 MPD 506 A 1 HETATM 8 C C5 MPD . . . H 6 26.438 33.439 3.359 1 78.01 ? C5 MPD 506 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #