data_4R7P # _model_server_result.job_id kGtQR5jKck6AnCJ3l9K_4A _model_server_result.datetime_utc '2024-12-22 06:15:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":606}' # _entry.id 4R7P # _exptl.entry_id 4R7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R7P _cell.length_a 138.97 _cell.length_b 138.97 _cell.length_c 311.62 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 103.873333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 R N N ? 6 S N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 IA N N ? 6 JA N N ? 6 KA N N ? 6 LA N N ? 6 SA N N ? 6 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 65 A GLU 47 1_555 R ZN ZN . A ZN 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 A SG CYS 141 A CYS 123 1_555 S ZN ZN . A ZN 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc3 A NE2 GLN 458 A GLN 440 1_555 S ZN ZN . A ZN 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 R ZN ZN . A ZN 614 1_555 UA O HOH . A HOH 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc5 S ZN ZN . A ZN 615 1_555 UA O HOH . A HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 B OD2 ASP 188 B ASP 170 1_555 AA ZN ZN . B ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc7 B OD1 ASP 188 B ASP 170 1_555 AA ZN ZN . B ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc8 B OD1 ASN 197 B ASN 179 1_555 BA ZN ZN . B ZN 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc9 B NE2 HIS 198 B HIS 180 1_555 BA ZN ZN . B ZN 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc10 B ND1 HIS 475 B HIS 457 1_555 CA ZN ZN . B ZN 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc11 C NE2 GLN 105 C GLN 87 1_555 LA ZN ZN . C ZN 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? metalc ? metalc12 C OE1 GLN 105 C GLN 87 1_555 LA ZN ZN . C ZN 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc13 C OE1 GLU 165 C GLU 147 1_555 JA ZN ZN . C ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc14 C OE2 GLU 165 C GLU 147 1_555 JA ZN ZN . C ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc15 C SG CYS 199 C CYS 181 1_555 JA ZN ZN . C ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc16 C NE2 HIS 284 C HIS 266 1_555 LA ZN ZN . C ZN 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc17 C OD2 ASP 459 C ASP 441 1_555 KA ZN ZN . C ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc18 C OD1 ASP 459 C ASP 441 1_555 KA ZN ZN . C ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc19 KA ZN ZN . C ZN 608 1_555 WA O HOH . C HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc20 D OE1 GLU 165 D GLU 147 1_555 TA ZN ZN . D ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc21 D OE2 GLU 165 D GLU 147 1_555 TA ZN ZN . D ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc22 D SG CYS 199 D CYS 181 1_555 TA ZN ZN . D ZN 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc23 SA ZN ZN . D ZN 607 1_555 XA O HOH . D HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4R7P _atom_sites.fract_transf_matrix[1][1] 0.007196 _atom_sites.fract_transf_matrix[1][2] 0.004154 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 UPG A 1 601 1 UPG UPG . F 3 SO4 A 1 602 2 SO4 SO4 . G 3 SO4 A 1 603 7 SO4 SO4 . H 3 SO4 A 1 604 8 SO4 SO4 . I 3 SO4 A 1 605 9 SO4 SO4 . J 3 SO4 A 1 606 10 SO4 SO4 . K 3 SO4 A 1 607 12 SO4 SO4 . L 3 SO4 A 1 608 14 SO4 SO4 . M 4 ACT A 1 609 3 ACT ACT . N 5 EDO A 1 610 1 EDO EDO . O 5 EDO A 1 611 3 EDO EDO . P 5 EDO A 1 612 8 EDO EDO . Q 5 EDO A 1 613 11 EDO EDO . R 6 ZN A 1 614 2 ZN ZN . S 6 ZN A 1 615 3 ZN ZN . T 3 SO4 B 1 601 5 SO4 SO4 . U 3 SO4 B 1 602 6 SO4 SO4 . V 5 EDO B 1 603 2 EDO EDO . W 5 EDO B 1 604 4 EDO EDO . X 5 EDO B 1 605 5 EDO EDO . Y 5 EDO B 1 606 6 EDO EDO . Z 5 EDO B 1 607 10 EDO EDO . AA 6 ZN B 1 608 5 ZN ZN . BA 6 ZN B 1 609 8 ZN ZN . CA 6 ZN B 1 610 11 ZN ZN . DA 3 SO4 C 1 601 3 SO4 SO4 . EA 3 SO4 C 1 602 4 SO4 SO4 . FA 3 SO4 C 1 603 11 SO4 SO4 . GA 4 ACT C 1 604 2 ACT ACT . HA 5 EDO C 1 605 7 EDO EDO . IA 6 ZN C 1 606 4 ZN ZN . JA 6 ZN C 1 607 6 ZN ZN . KA 6 ZN C 1 608 9 ZN ZN . LA 6 ZN C 1 609 10 ZN ZN . MA 3 SO4 D 1 601 1 SO4 SO4 . NA 3 SO4 D 1 602 13 SO4 SO4 . OA 3 SO4 D 1 603 25 SO4 SO4 . PA 4 ACT D 1 604 1 ACT ACT . QA 4 ACT D 1 605 4 ACT ACT . RA 5 EDO D 1 606 9 EDO EDO . SA 6 ZN D 1 607 1 ZN ZN . TA 6 ZN D 1 608 7 ZN ZN . UA 7 HOH A 1 701 2 HOH HOH . UA 7 HOH A 2 702 9 HOH HOH . UA 7 HOH A 3 703 13 HOH HOH . UA 7 HOH A 4 704 17 HOH HOH . UA 7 HOH A 5 705 27 HOH HOH . UA 7 HOH A 6 706 28 HOH HOH . UA 7 HOH A 7 707 29 HOH HOH . UA 7 HOH A 8 708 34 HOH HOH . UA 7 HOH A 9 709 36 HOH HOH . UA 7 HOH A 10 710 39 HOH HOH . UA 7 HOH A 11 711 43 HOH HOH . UA 7 HOH A 12 712 44 HOH HOH . UA 7 HOH A 13 713 47 HOH HOH . UA 7 HOH A 14 714 48 HOH HOH . UA 7 HOH A 15 715 49 HOH HOH . UA 7 HOH A 16 716 50 HOH HOH . UA 7 HOH A 17 717 53 HOH HOH . UA 7 HOH A 18 718 55 HOH HOH . UA 7 HOH A 19 719 56 HOH HOH . UA 7 HOH A 20 720 58 HOH HOH . UA 7 HOH A 21 721 68 HOH HOH . UA 7 HOH A 22 722 71 HOH HOH . UA 7 HOH A 23 723 73 HOH HOH . UA 7 HOH A 24 724 81 HOH HOH . UA 7 HOH A 25 725 82 HOH HOH . UA 7 HOH A 26 726 88 HOH HOH . UA 7 HOH A 27 727 92 HOH HOH . UA 7 HOH A 28 728 93 HOH HOH . UA 7 HOH A 29 729 94 HOH HOH . UA 7 HOH A 30 730 97 HOH HOH . UA 7 HOH A 31 731 99 HOH HOH . UA 7 HOH A 32 732 104 HOH HOH . UA 7 HOH A 33 733 110 HOH HOH . UA 7 HOH A 34 734 114 HOH HOH . VA 7 HOH B 1 701 3 HOH HOH . VA 7 HOH B 2 702 6 HOH HOH . VA 7 HOH B 3 703 7 HOH HOH . VA 7 HOH B 4 704 11 HOH HOH . VA 7 HOH B 5 705 18 HOH HOH . VA 7 HOH B 6 706 19 HOH HOH . VA 7 HOH B 7 707 20 HOH HOH . VA 7 HOH B 8 708 21 HOH HOH . VA 7 HOH B 9 709 23 HOH HOH . VA 7 HOH B 10 710 30 HOH HOH . VA 7 HOH B 11 711 32 HOH HOH . VA 7 HOH B 12 712 37 HOH HOH . VA 7 HOH B 13 713 40 HOH HOH . VA 7 HOH B 14 714 41 HOH HOH . VA 7 HOH B 15 715 46 HOH HOH . VA 7 HOH B 16 716 52 HOH HOH . VA 7 HOH B 17 717 65 HOH HOH . VA 7 HOH B 18 718 75 HOH HOH . VA 7 HOH B 19 719 76 HOH HOH . VA 7 HOH B 20 720 79 HOH HOH . VA 7 HOH B 21 721 85 HOH HOH . VA 7 HOH B 22 722 89 HOH HOH . VA 7 HOH B 23 723 96 HOH HOH . VA 7 HOH B 24 724 106 HOH HOH . VA 7 HOH B 25 725 117 HOH HOH . WA 7 HOH C 1 701 1 HOH HOH . WA 7 HOH C 2 702 8 HOH HOH . WA 7 HOH C 3 703 14 HOH HOH . WA 7 HOH C 4 704 15 HOH HOH . WA 7 HOH C 5 705 16 HOH HOH . WA 7 HOH C 6 706 22 HOH HOH . WA 7 HOH C 7 707 24 HOH HOH . WA 7 HOH C 8 708 31 HOH HOH . WA 7 HOH C 9 709 33 HOH HOH . WA 7 HOH C 10 710 35 HOH HOH . WA 7 HOH C 11 711 38 HOH HOH . WA 7 HOH C 12 712 45 HOH HOH . WA 7 HOH C 13 713 51 HOH HOH . WA 7 HOH C 14 714 62 HOH HOH . WA 7 HOH C 15 715 67 HOH HOH . WA 7 HOH C 16 716 70 HOH HOH . WA 7 HOH C 17 717 72 HOH HOH . WA 7 HOH C 18 718 74 HOH HOH . WA 7 HOH C 19 719 77 HOH HOH . WA 7 HOH C 20 720 80 HOH HOH . WA 7 HOH C 21 721 86 HOH HOH . WA 7 HOH C 22 722 100 HOH HOH . WA 7 HOH C 23 723 107 HOH HOH . WA 7 HOH C 24 724 108 HOH HOH . WA 7 HOH C 25 725 113 HOH HOH . WA 7 HOH C 26 726 116 HOH HOH . XA 7 HOH D 1 701 4 HOH HOH . XA 7 HOH D 2 702 5 HOH HOH . XA 7 HOH D 3 703 10 HOH HOH . XA 7 HOH D 4 704 12 HOH HOH . XA 7 HOH D 5 705 25 HOH HOH . XA 7 HOH D 6 706 26 HOH HOH . XA 7 HOH D 7 707 42 HOH HOH . XA 7 HOH D 8 708 54 HOH HOH . XA 7 HOH D 9 709 57 HOH HOH . XA 7 HOH D 10 710 59 HOH HOH . XA 7 HOH D 11 711 60 HOH HOH . XA 7 HOH D 12 712 61 HOH HOH . XA 7 HOH D 13 713 63 HOH HOH . XA 7 HOH D 14 714 64 HOH HOH . XA 7 HOH D 15 715 66 HOH HOH . XA 7 HOH D 16 716 69 HOH HOH . XA 7 HOH D 17 717 78 HOH HOH . XA 7 HOH D 18 718 83 HOH HOH . XA 7 HOH D 19 719 84 HOH HOH . XA 7 HOH D 20 720 87 HOH HOH . XA 7 HOH D 21 721 90 HOH HOH . XA 7 HOH D 22 722 91 HOH HOH . XA 7 HOH D 23 723 95 HOH HOH . XA 7 HOH D 24 724 98 HOH HOH . XA 7 HOH D 25 725 101 HOH HOH . XA 7 HOH D 26 726 102 HOH HOH . XA 7 HOH D 27 727 103 HOH HOH . XA 7 HOH D 28 728 105 HOH HOH . XA 7 HOH D 29 729 109 HOH HOH . XA 7 HOH D 30 730 111 HOH HOH . XA 7 HOH D 31 731 112 HOH HOH . XA 7 HOH D 32 732 115 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id IA _atom_site.label_entity_id 6 _atom_site.Cartn_x 17.245 _atom_site.Cartn_y -72.375 _atom_site.Cartn_z 8.263 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 211.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 606 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #