data_4R7S # _model_server_result.job_id O7Z5DZvI-997psCDCl1dQA _model_server_result.datetime_utc '2024-12-22 05:59:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":307}' # _entry.id 4R7S # _exptl.entry_id 4R7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R7S _cell.length_a 39.676 _cell.length_b 72.54 _cell.length_c 109.341 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 30 A ALA 48 1_555 A N MSE 31 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C MSE 31 A MSE 49 1_555 A N ARG 32 A ARG 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C TYR 125 A TYR 143 1_555 A N MSE 126 A MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale4 A C MSE 126 A MSE 144 1_555 A N TRP 127 A TRP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale5 A C LYS 154 A LYS 172 1_555 A N MSE 155 A MSE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 A C MSE 155 A MSE 173 1_555 A N ARG 156 A ARG 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale7 A C GLU 172 A GLU 190 1_555 A N MSE 173 A MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale8 A C MSE 173 A MSE 191 1_555 A N PRO 174 A PRO 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale9 A C PHE 188 A PHE 206 1_555 A N MSE 189 A MSE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale10 A C MSE 189 A MSE 207 1_555 A N MSE 190 A MSE 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C MSE 190 A MSE 208 1_555 A N GLY 191 A GLY 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale12 A C ALA 196 A ALA 214 1_555 A N MSE 197 A MSE 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale13 A C MSE 197 A MSE 215 1_555 A N ALA 198 A ALA 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale14 A C SER 239 A SER 257 1_555 A N MSE 240 A MSE 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale15 A C MSE 240 A MSE 258 1_555 A N GLY 241 A GLY 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale16 A C THR 254 A THR 272 1_555 A N MSE 255 A MSE 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale17 A C MSE 255 A MSE 273 1_555 A N ASN 256 A ASN 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4R7S _atom_sites.fract_transf_matrix[1][1] 0.025204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009146 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 300 300 NO3 NO3 . C 3 PEG A 1 301 301 PEG PEG . D 4 EDO A 1 302 302 EDO EDO . E 4 EDO A 1 303 303 EDO EDO . F 4 EDO A 1 304 304 EDO EDO . G 4 EDO A 1 305 305 EDO EDO . H 4 EDO A 1 306 306 EDO EDO . I 4 EDO A 1 307 307 EDO EDO . J 5 HOH A 1 401 308 HOH HOH . J 5 HOH A 2 402 309 HOH HOH . J 5 HOH A 3 403 310 HOH HOH . J 5 HOH A 4 404 311 HOH HOH . J 5 HOH A 5 405 312 HOH HOH . J 5 HOH A 6 406 313 HOH HOH . J 5 HOH A 7 407 314 HOH HOH . J 5 HOH A 8 408 315 HOH HOH . J 5 HOH A 9 409 316 HOH HOH . J 5 HOH A 10 410 317 HOH HOH . J 5 HOH A 11 411 318 HOH HOH . J 5 HOH A 12 412 319 HOH HOH . J 5 HOH A 13 413 320 HOH HOH . J 5 HOH A 14 414 321 HOH HOH . J 5 HOH A 15 415 322 HOH HOH . J 5 HOH A 16 416 323 HOH HOH . J 5 HOH A 17 417 324 HOH HOH . J 5 HOH A 18 418 325 HOH HOH . J 5 HOH A 19 419 326 HOH HOH . J 5 HOH A 20 420 327 HOH HOH . J 5 HOH A 21 421 328 HOH HOH . J 5 HOH A 22 422 329 HOH HOH . J 5 HOH A 23 423 330 HOH HOH . J 5 HOH A 24 424 331 HOH HOH . J 5 HOH A 25 425 332 HOH HOH . J 5 HOH A 26 426 333 HOH HOH . J 5 HOH A 27 427 334 HOH HOH . J 5 HOH A 28 428 335 HOH HOH . J 5 HOH A 29 429 336 HOH HOH . J 5 HOH A 30 430 337 HOH HOH . J 5 HOH A 31 431 338 HOH HOH . J 5 HOH A 32 432 339 HOH HOH . J 5 HOH A 33 433 340 HOH HOH . J 5 HOH A 34 434 341 HOH HOH . J 5 HOH A 35 435 342 HOH HOH . J 5 HOH A 36 436 343 HOH HOH . J 5 HOH A 37 437 344 HOH HOH . J 5 HOH A 38 438 345 HOH HOH . J 5 HOH A 39 439 346 HOH HOH . J 5 HOH A 40 440 347 HOH HOH . J 5 HOH A 41 441 348 HOH HOH . J 5 HOH A 42 442 349 HOH HOH . J 5 HOH A 43 443 350 HOH HOH . J 5 HOH A 44 444 351 HOH HOH . J 5 HOH A 45 445 352 HOH HOH . J 5 HOH A 46 446 353 HOH HOH . J 5 HOH A 47 447 354 HOH HOH . J 5 HOH A 48 448 355 HOH HOH . J 5 HOH A 49 449 356 HOH HOH . J 5 HOH A 50 450 357 HOH HOH . J 5 HOH A 51 451 358 HOH HOH . J 5 HOH A 52 452 359 HOH HOH . J 5 HOH A 53 453 360 HOH HOH . J 5 HOH A 54 454 361 HOH HOH . J 5 HOH A 55 455 362 HOH HOH . J 5 HOH A 56 456 363 HOH HOH . J 5 HOH A 57 457 364 HOH HOH . J 5 HOH A 58 458 365 HOH HOH . J 5 HOH A 59 459 366 HOH HOH . J 5 HOH A 60 460 367 HOH HOH . J 5 HOH A 61 461 368 HOH HOH . J 5 HOH A 62 462 369 HOH HOH . J 5 HOH A 63 463 370 HOH HOH . J 5 HOH A 64 464 371 HOH HOH . J 5 HOH A 65 465 372 HOH HOH . J 5 HOH A 66 466 373 HOH HOH . J 5 HOH A 67 467 374 HOH HOH . J 5 HOH A 68 468 375 HOH HOH . J 5 HOH A 69 469 376 HOH HOH . J 5 HOH A 70 470 377 HOH HOH . J 5 HOH A 71 471 378 HOH HOH . J 5 HOH A 72 472 379 HOH HOH . J 5 HOH A 73 473 380 HOH HOH . J 5 HOH A 74 474 381 HOH HOH . J 5 HOH A 75 475 382 HOH HOH . J 5 HOH A 76 476 383 HOH HOH . J 5 HOH A 77 477 384 HOH HOH . J 5 HOH A 78 478 385 HOH HOH . J 5 HOH A 79 479 386 HOH HOH . J 5 HOH A 80 480 387 HOH HOH . J 5 HOH A 81 481 388 HOH HOH . J 5 HOH A 82 482 389 HOH HOH . J 5 HOH A 83 483 390 HOH HOH . J 5 HOH A 84 484 391 HOH HOH . J 5 HOH A 85 485 392 HOH HOH . J 5 HOH A 86 486 393 HOH HOH . J 5 HOH A 87 487 394 HOH HOH . J 5 HOH A 88 488 395 HOH HOH . J 5 HOH A 89 489 396 HOH HOH . J 5 HOH A 90 490 397 HOH HOH . J 5 HOH A 91 491 398 HOH HOH . J 5 HOH A 92 492 399 HOH HOH . J 5 HOH A 93 493 400 HOH HOH . J 5 HOH A 94 494 401 HOH HOH . J 5 HOH A 95 495 402 HOH HOH . J 5 HOH A 96 496 403 HOH HOH . J 5 HOH A 97 497 404 HOH HOH . J 5 HOH A 98 498 405 HOH HOH . J 5 HOH A 99 499 406 HOH HOH . J 5 HOH A 100 500 407 HOH HOH . J 5 HOH A 101 501 408 HOH HOH . J 5 HOH A 102 502 409 HOH HOH . J 5 HOH A 103 503 410 HOH HOH . J 5 HOH A 104 504 411 HOH HOH . J 5 HOH A 105 505 412 HOH HOH . J 5 HOH A 106 506 413 HOH HOH . J 5 HOH A 107 507 414 HOH HOH . J 5 HOH A 108 508 415 HOH HOH . J 5 HOH A 109 509 416 HOH HOH . J 5 HOH A 110 510 417 HOH HOH . J 5 HOH A 111 511 418 HOH HOH . J 5 HOH A 112 512 419 HOH HOH . J 5 HOH A 113 513 420 HOH HOH . J 5 HOH A 114 514 421 HOH HOH . J 5 HOH A 115 515 422 HOH HOH . J 5 HOH A 116 516 423 HOH HOH . J 5 HOH A 117 517 424 HOH HOH . J 5 HOH A 118 518 425 HOH HOH . J 5 HOH A 119 519 426 HOH HOH . J 5 HOH A 120 520 427 HOH HOH . J 5 HOH A 121 521 428 HOH HOH . J 5 HOH A 122 522 429 HOH HOH . J 5 HOH A 123 523 430 HOH HOH . J 5 HOH A 124 524 431 HOH HOH . J 5 HOH A 125 525 432 HOH HOH . J 5 HOH A 126 526 433 HOH HOH . J 5 HOH A 127 527 434 HOH HOH . J 5 HOH A 128 528 435 HOH HOH . J 5 HOH A 129 529 436 HOH HOH . J 5 HOH A 130 530 437 HOH HOH . J 5 HOH A 131 531 438 HOH HOH . J 5 HOH A 132 532 439 HOH HOH . J 5 HOH A 133 533 440 HOH HOH . J 5 HOH A 134 534 441 HOH HOH . J 5 HOH A 135 535 442 HOH HOH . J 5 HOH A 136 536 443 HOH HOH . J 5 HOH A 137 537 444 HOH HOH . J 5 HOH A 138 538 445 HOH HOH . J 5 HOH A 139 539 446 HOH HOH . J 5 HOH A 140 540 447 HOH HOH . J 5 HOH A 141 541 448 HOH HOH . J 5 HOH A 142 542 449 HOH HOH . J 5 HOH A 143 543 450 HOH HOH . J 5 HOH A 144 544 451 HOH HOH . J 5 HOH A 145 545 452 HOH HOH . J 5 HOH A 146 546 453 HOH HOH . J 5 HOH A 147 547 454 HOH HOH . J 5 HOH A 148 548 455 HOH HOH . J 5 HOH A 149 549 456 HOH HOH . J 5 HOH A 150 550 457 HOH HOH . J 5 HOH A 151 551 458 HOH HOH . J 5 HOH A 152 552 459 HOH HOH . J 5 HOH A 153 553 460 HOH HOH . J 5 HOH A 154 554 461 HOH HOH . J 5 HOH A 155 555 462 HOH HOH . J 5 HOH A 156 556 463 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 4 11.1 46.939 81.263 1 79.09 ? C1 EDO 307 A 1 HETATM 2 O O1 EDO . . . I 4 10.329 47.727 80.368 1 79.71 ? O1 EDO 307 A 1 HETATM 3 C C2 EDO . . . I 4 11.714 45.727 80.509 1 79.29 ? C2 EDO 307 A 1 HETATM 4 O O2 EDO . . . I 4 12.549 44.969 81.377 1 78.83 ? O2 EDO 307 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #