data_4R8C # _model_server_result.job_id 8SYgeKFsq_LnYeIY1TfzyA _model_server_result.datetime_utc '2025-07-01 23:46:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":202}' # _entry.id 4R8C # _exptl.entry_id 4R8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 85.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUBIDIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R8C _cell.length_a 67.305 _cell.length_b 67.305 _cell.length_c 84.294 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,U 1 1,2,3,4 B,L,M,N,O,P,Q,R,S,T,V 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 134.61 0 3 'crystal symmetry operation' 3_665 -y+1,x+1,z 0 -1 0 1 0 0 0 0 1 67.305 67.305 0 4 'crystal symmetry operation' 4_465 y-1,-x+1,z 0 1 0 -1 0 0 0 0 1 -67.305 67.305 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 46 A THR 63 1_555 C RB RB . A RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc2 A O THR 46 A THR 63 1_555 D RB RB . A RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc3 A OG1 THR 46 A THR 63 1_555 D RB RB . A RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc4 A O VAL 47 A VAL 64 1_555 C RB RB . A RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc5 A O VAL 47 A VAL 64 1_555 E RB RB . A RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc6 A O GLY 48 A GLY 65 1_555 E RB RB . A RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc7 B OG1 THR 46 B THR 63 1_555 M RB RB . B RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc8 B O THR 46 B THR 63 1_555 M RB RB . B RB 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc9 B O THR 46 B THR 63 1_555 N RB RB . B RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc10 B O VAL 47 B VAL 64 1_555 L RB RB . B RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc11 B O VAL 47 B VAL 64 1_555 N RB RB . B RB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc12 B O GLY 48 B GLY 65 1_555 L RB RB . B RB 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? # _chem_comp.formula 'Rb 1' _chem_comp.formula_weight 85.468 _chem_comp.id RB _chem_comp.mon_nstd_flag . _chem_comp.name 'RUBIDIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4R8C _atom_sites.fract_transf_matrix[1][1] 0.014858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RB A 1 201 2 RB RB . D 2 RB A 1 202 3 RB RB . E 2 RB A 1 203 6 RB RB . F 3 MPD A 1 204 2 MPD MPD . G 4 GLY A 1 205 3 GLY GLY . H 4 GLY A 1 206 4 GLY GLY . I 4 GLY A 1 207 6 GLY GLY . J 4 GLY A 1 208 7 GLY GLY . K 4 GLY A 1 209 10 GLY GLY . L 2 RB B 1 201 1 RB RB . M 2 RB B 1 202 4 RB RB . N 2 RB B 1 203 5 RB RB . O 3 MPD B 1 204 1 MPD MPD . P 4 GLY B 1 205 1 GLY GLY . Q 4 GLY B 1 206 2 GLY GLY . R 4 GLY B 1 207 5 GLY GLY . S 4 GLY B 1 208 8 GLY GLY . T 4 GLY B 1 209 9 GLY GLY . U 5 HOH A 1 301 1 HOH HOH . U 5 HOH A 2 302 2 HOH HOH . U 5 HOH A 3 303 6 HOH HOH . U 5 HOH A 4 304 7 HOH HOH . U 5 HOH A 5 305 8 HOH HOH . U 5 HOH A 6 306 10 HOH HOH . U 5 HOH A 7 307 11 HOH HOH . U 5 HOH A 8 308 12 HOH HOH . U 5 HOH A 9 309 15 HOH HOH . U 5 HOH A 10 310 16 HOH HOH . U 5 HOH A 11 311 17 HOH HOH . U 5 HOH A 12 312 20 HOH HOH . U 5 HOH A 13 313 21 HOH HOH . U 5 HOH A 14 314 23 HOH HOH . U 5 HOH A 15 315 26 HOH HOH . V 5 HOH B 1 301 3 HOH HOH . V 5 HOH B 2 302 4 HOH HOH . V 5 HOH B 3 303 5 HOH HOH . V 5 HOH B 4 304 9 HOH HOH . V 5 HOH B 5 305 13 HOH HOH . V 5 HOH B 6 306 14 HOH HOH . V 5 HOH B 7 307 18 HOH HOH . V 5 HOH B 8 308 19 HOH HOH . V 5 HOH B 9 309 22 HOH HOH . V 5 HOH B 10 310 24 HOH HOH . V 5 HOH B 11 311 25 HOH HOH . V 5 HOH B 12 312 27 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RB _atom_site.label_atom_id RB _atom_site.label_comp_id RB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 2 _atom_site.Cartn_x 0 _atom_site.Cartn_y 67.304 _atom_site.Cartn_z 22.404 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 48.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RB _atom_site.auth_comp_id RB _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #