data_4R8N
#
_model_server_result.job_id            hJ3BWS0OrRAVCT4wXXcQXg 
_model_server_result.datetime_utc      '2024-11-26 01:21:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4r8n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    4R8N 
#
_exptl.entry_id    4R8N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4R8N 
_cell.length_a            47.605 
_cell.length_b            47.605 
_cell.length_c            62.912 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4R8N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 21 A ASP 21 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc4 B O4P THP . A THP 201 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc5 C CA CA . A CA 202 1_555 F O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc6 C CA CA . A CA 202 1_555 F O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc7 C CA CA . A CA 202 1_555 F O HOH . A HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 224 n n 
C1 H1C1 MRD sing 225 n n 
C1 H1C2 MRD sing 226 n n 
C1 H1C3 MRD sing 227 n n 
C2 O2 MRD sing 228 n n 
C2 CM MRD sing 229 n n 
C2 C3 MRD sing 230 n n 
O2 H2 MRD sing 231 n n 
CM HMC1 MRD sing 232 n n 
CM HMC2 MRD sing 233 n n 
CM HMC3 MRD sing 234 n n 
C3 C4 MRD sing 235 n n 
C3 H3C1 MRD sing 236 n n 
C3 H3C2 MRD sing 237 n n 
C4 O4 MRD sing 238 n n 
C4 C5 MRD sing 239 n n 
C4 H4 MRD sing 240 n n 
O4 HA MRD sing 241 n n 
C5 H5C1 MRD sing 242 n n 
C5 H5C2 MRD sing 243 n n 
C5 H5C3 MRD sing 244 n n 
#
_atom_sites.entry_id                     4R8N 
_atom_sites.fract_transf_matrix[1][1]    0.021006 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021006 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 THP A 1 201 1 THP THP . 
C 3 CA A 1 202 1 CA CA . 
D 4 PO4 A 1 203 1 PO4 PO4 . 
E 5 MRD A 1 204 1 MRD MRD . 
F 6 HOH A 1 301 1 HOH HOH . 
F 6 HOH A 2 302 2 HOH HOH . 
F 6 HOH A 3 303 3 HOH HOH . 
F 6 HOH A 4 304 5 HOH HOH . 
F 6 HOH A 5 305 6 HOH HOH . 
F 6 HOH A 6 306 7 HOH HOH . 
F 6 HOH A 7 307 8 HOH HOH . 
F 6 HOH A 8 308 9 HOH HOH . 
F 6 HOH A 9 309 10 HOH HOH . 
F 6 HOH A 10 310 11 HOH HOH . 
F 6 HOH A 11 311 12 HOH HOH . 
F 6 HOH A 12 312 14 HOH HOH . 
F 6 HOH A 13 313 15 HOH HOH . 
F 6 HOH A 14 314 16 HOH HOH . 
F 6 HOH A 15 315 17 HOH HOH . 
F 6 HOH A 16 316 18 HOH HOH . 
F 6 HOH A 17 317 20 HOH HOH . 
F 6 HOH A 18 318 21 HOH HOH . 
F 6 HOH A 19 319 22 HOH HOH . 
F 6 HOH A 20 320 23 HOH HOH . 
F 6 HOH A 21 321 24 HOH HOH . 
F 6 HOH A 22 322 25 HOH HOH . 
F 6 HOH A 23 323 26 HOH HOH . 
F 6 HOH A 24 324 27 HOH HOH . 
F 6 HOH A 25 325 28 HOH HOH . 
F 6 HOH A 26 326 29 HOH HOH . 
F 6 HOH A 27 327 30 HOH HOH . 
F 6 HOH A 28 328 32 HOH HOH . 
F 6 HOH A 29 329 33 HOH HOH . 
F 6 HOH A 30 330 34 HOH HOH . 
F 6 HOH A 31 331 35 HOH HOH . 
F 6 HOH A 32 332 36 HOH HOH . 
F 6 HOH A 33 333 37 HOH HOH . 
F 6 HOH A 34 334 38 HOH HOH . 
F 6 HOH A 35 335 39 HOH HOH . 
F 6 HOH A 36 336 40 HOH HOH . 
F 6 HOH A 37 337 41 HOH HOH . 
F 6 HOH A 38 338 42 HOH HOH . 
F 6 HOH A 39 339 43 HOH HOH . 
F 6 HOH A 40 340 44 HOH HOH . 
F 6 HOH A 41 341 45 HOH HOH . 
F 6 HOH A 42 342 46 HOH HOH . 
F 6 HOH A 43 343 47 HOH HOH . 
F 6 HOH A 44 344 48 HOH HOH . 
F 6 HOH A 45 345 49 HOH HOH . 
F 6 HOH A 46 346 51 HOH HOH . 
F 6 HOH A 47 347 52 HOH HOH . 
F 6 HOH A 48 348 53 HOH HOH . 
F 6 HOH A 49 349 54 HOH HOH . 
F 6 HOH A 50 350 55 HOH HOH . 
F 6 HOH A 51 351 56 HOH HOH . 
F 6 HOH A 52 352 57 HOH HOH . 
F 6 HOH A 53 353 58 HOH HOH . 
F 6 HOH A 54 354 59 HOH HOH . 
F 6 HOH A 55 355 60 HOH HOH . 
F 6 HOH A 56 356 63 HOH HOH . 
F 6 HOH A 57 357 64 HOH HOH . 
F 6 HOH A 58 358 65 HOH HOH . 
F 6 HOH A 59 359 66 HOH HOH . 
F 6 HOH A 60 360 67 HOH HOH . 
F 6 HOH A 61 361 68 HOH HOH . 
F 6 HOH A 62 362 69 HOH HOH . 
F 6 HOH A 63 363 70 HOH HOH . 
F 6 HOH A 64 364 71 HOH HOH . 
F 6 HOH A 65 365 72 HOH HOH . 
F 6 HOH A 66 366 74 HOH HOH . 
F 6 HOH A 67 367 75 HOH HOH . 
F 6 HOH A 68 368 77 HOH HOH . 
F 6 HOH A 69 369 78 HOH HOH . 
F 6 HOH A 70 370 79 HOH HOH . 
F 6 HOH A 71 371 80 HOH HOH . 
F 6 HOH A 72 372 82 HOH HOH . 
F 6 HOH A 73 373 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . E 5 -17.581 1.712 16.872 1 49.79 ? C1 MRD 204 A 1 
HETATM 2 C C2 MRD . . . E 5 -16.29 1.125 16.325 1 51.99 ? C2 MRD 204 A 1 
HETATM 3 O O2 MRD . . . E 5 -15.776 2.019 15.295 1 47.53 ? O2 MRD 204 A 1 
HETATM 4 C CM MRD . . . E 5 -15.301 1.033 17.477 1 44.83 ? CM MRD 204 A 1 
HETATM 5 C C3 MRD . . . E 5 -16.448 -0.229 15.577 1 55.68 ? C3 MRD 204 A 1 
HETATM 6 C C4 MRD . . . E 5 -17.147 -1.415 16.257 1 63.56 ? C4 MRD 204 A 1 
HETATM 7 O O4 MRD . . . E 5 -18.538 -1.115 16.47 1 63.78 ? O4 MRD 204 A 1 
HETATM 8 C C5 MRD . . . E 5 -16.486 -1.854 17.559 1 60.49 ? C5 MRD 204 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           8 
#