data_4R98 # _model_server_result.job_id X76uRIqKwUXqnATOS3eZmg _model_server_result.datetime_utc '2024-12-02 13:40:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 4R98 # _exptl.entry_id 4R98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.216 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4R98 _cell.length_a 48.452 _cell.length_b 48.452 _cell.length_c 233.393 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N6 O10 P2' _chem_comp.formula_weight 442.216 _chem_comp.id GNH _chem_comp.mon_nstd_flag . _chem_comp.name 'AMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3B PB GNH sing 129 n n N3B HN31 GNH sing 130 n n N3B HN32 GNH sing 131 n n PB O1B GNH doub 132 n n PB O2B GNH sing 133 n n PB O3A GNH sing 134 n n O2B HOB2 GNH sing 135 n n O3A PA GNH sing 136 n n PA O1A GNH doub 137 n n PA O2A GNH sing 138 n n PA O5' GNH sing 139 n n O2A HOA2 GNH sing 140 n n O5' C5' GNH sing 141 n n C5' C4' GNH sing 142 n n C5' "H5'2" GNH sing 143 n n C5' "H5'1" GNH sing 144 n n C4' O4' GNH sing 145 n n C4' C3' GNH sing 146 n n C4' H4' GNH sing 147 n n O4' C1' GNH sing 148 n n C3' O3' GNH sing 149 n n C3' C2' GNH sing 150 n n C3' H3' GNH sing 151 n n O3' HO3' GNH sing 152 n n C2' O2' GNH sing 153 n n C2' C1' GNH sing 154 n n C2' H2' GNH sing 155 n n O2' HO2' GNH sing 156 n n C1' N9 GNH sing 157 n n C1' H1' GNH sing 158 n n N9 C8 GNH sing 159 n y N9 C4 GNH sing 160 n y C8 N7 GNH doub 161 n y C8 H8 GNH sing 162 n n N7 C5 GNH sing 163 n y C5 C6 GNH sing 164 n y C5 C4 GNH doub 165 n y C6 O6 GNH doub 166 n n C6 N1 GNH sing 167 n y N1 C2 GNH sing 168 n y N1 HN1 GNH sing 169 n n C2 N2 GNH sing 170 n n C2 N3 GNH doub 171 n y N2 HN21 GNH sing 172 n n N2 HN22 GNH sing 173 n n N3 C4 GNH sing 174 n y # _atom_sites.entry_id 4R98 _atom_sites.fract_transf_matrix[1][1] 0.020639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020639 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNH A 1 300 300 GNH GNH . D 3 HOH A 1 401 1 HOH HOH . D 3 HOH A 2 402 2 HOH HOH . D 3 HOH A 3 403 4 HOH HOH . D 3 HOH A 4 404 7 HOH HOH . D 3 HOH A 5 405 9 HOH HOH . D 3 HOH A 6 406 10 HOH HOH . D 3 HOH A 7 407 12 HOH HOH . D 3 HOH A 8 408 13 HOH HOH . D 3 HOH A 9 409 16 HOH HOH . D 3 HOH A 10 410 19 HOH HOH . D 3 HOH A 11 411 20 HOH HOH . D 3 HOH A 12 412 21 HOH HOH . D 3 HOH A 13 413 22 HOH HOH . D 3 HOH A 14 414 24 HOH HOH . D 3 HOH A 15 415 25 HOH HOH . D 3 HOH A 16 416 27 HOH HOH . D 3 HOH A 17 417 28 HOH HOH . D 3 HOH A 18 418 30 HOH HOH . E 3 HOH B 1 301 3 HOH HOH . E 3 HOH B 2 302 5 HOH HOH . E 3 HOH B 3 303 8 HOH HOH . E 3 HOH B 4 304 11 HOH HOH . E 3 HOH B 5 305 14 HOH HOH . E 3 HOH B 6 306 17 HOH HOH . E 3 HOH B 7 307 18 HOH HOH . E 3 HOH B 8 308 26 HOH HOH . E 3 HOH B 9 309 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3B GNH . . . C 2 13.284 8.999 -10.388 1 37.87 ? N3B GNH 300 A 1 HETATM 2 P PB GNH . . . C 2 12.914 7.293 -10.269 1 37.78 ? PB GNH 300 A 1 HETATM 3 O O1B GNH . . . C 2 12.303 7.012 -8.95 1 38.02 ? O1B GNH 300 A 1 HETATM 4 O O2B GNH . . . C 2 11.875 6.886 -11.425 1 38 ? O2B GNH 300 A 1 HETATM 5 O O3A GNH . . . C 2 14.263 6.429 -10.424 1 37.92 ? O3A GNH 300 A 1 HETATM 6 P PA GNH . . . C 2 14.888 6.122 -11.876 1 37.81 ? PA GNH 300 A 1 HETATM 7 O O1A GNH . . . C 2 14.174 4.931 -12.469 1 37.7 ? O1A GNH 300 A 1 HETATM 8 O O2A GNH . . . C 2 14.946 7.416 -12.653 1 37.95 ? O2A GNH 300 A 1 HETATM 9 O O5' GNH . . . C 2 16.394 5.681 -11.517 1 37.97 ? O5' GNH 300 A 1 HETATM 10 C C5' GNH . . . C 2 17.251 6.568 -10.8 1 37.94 ? C5' GNH 300 A 1 HETATM 11 C C4' GNH . . . C 2 18.71 6.184 -11.011 1 37.97 ? C4' GNH 300 A 1 HETATM 12 O O4' GNH . . . C 2 18.978 4.924 -10.39 1 38.06 ? O4' GNH 300 A 1 HETATM 13 C C3' GNH . . . C 2 19.069 6.039 -12.482 1 38.04 ? C3' GNH 300 A 1 HETATM 14 O O3' GNH . . . C 2 20.324 6.678 -12.727 1 37.96 ? O3' GNH 300 A 1 HETATM 15 C C2' GNH . . . C 2 19.155 4.542 -12.72 1 38 ? C2' GNH 300 A 1 HETATM 16 O O2' GNH . . . C 2 20.161 4.201 -13.679 1 38.03 ? O2' GNH 300 A 1 HETATM 17 C C1' GNH . . . C 2 19.486 3.984 -11.343 1 37.96 ? C1' GNH 300 A 1 HETATM 18 N N9 GNH . . . C 2 18.899 2.643 -11.087 1 37.96 ? N9 GNH 300 A 1 HETATM 19 C C8 GNH . . . C 2 17.616 2.27 -11.251 1 37.87 ? C8 GNH 300 A 1 HETATM 20 N N7 GNH . . . C 2 17.445 0.966 -10.906 1 37.89 ? N7 GNH 300 A 1 HETATM 21 C C5 GNH . . . C 2 18.637 0.489 -10.505 1 37.94 ? C5 GNH 300 A 1 HETATM 22 C C6 GNH . . . C 2 19.173 -0.803 -10.008 1 37.91 ? C6 GNH 300 A 1 HETATM 23 O O6 GNH . . . C 2 18.427 -1.798 -9.878 1 37.85 ? O6 GNH 300 A 1 HETATM 24 N N1 GNH . . . C 2 20.479 -0.874 -9.702 1 37.92 ? N1 GNH 300 A 1 HETATM 25 C C2 GNH . . . C 2 21.307 0.187 -9.834 1 37.97 ? C2 GNH 300 A 1 HETATM 26 N N2 GNH . . . C 2 22.617 0.06 -9.511 1 38 ? N2 GNH 300 A 1 HETATM 27 N N3 GNH . . . C 2 20.883 1.398 -10.282 1 38 ? N3 GNH 300 A 1 HETATM 28 C C4 GNH . . . C 2 19.589 1.602 -10.625 1 38 ? C4 GNH 300 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #