data_4R98
#
_model_server_result.job_id            K9ABLIDaw6nBJWeX79hhFg 
_model_server_result.datetime_utc      '2024-11-01 01:28:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4r98 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":300}' 
#
_entry.id    4R98 
#
_exptl.entry_id    4R98 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              442.216 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4R98 
_cell.length_a            48.452 
_cell.length_b            48.452 
_cell.length_c            233.393 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4R98 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N6 O10 P2' 
_chem_comp.formula_weight    442.216 
_chem_comp.id                GNH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3B PB GNH sing 129 n n 
N3B HN31 GNH sing 130 n n 
N3B HN32 GNH sing 131 n n 
PB O1B GNH doub 132 n n 
PB O2B GNH sing 133 n n 
PB O3A GNH sing 134 n n 
O2B HOB2 GNH sing 135 n n 
O3A PA GNH sing 136 n n 
PA O1A GNH doub 137 n n 
PA O2A GNH sing 138 n n 
PA O5' GNH sing 139 n n 
O2A HOA2 GNH sing 140 n n 
O5' C5' GNH sing 141 n n 
C5' C4' GNH sing 142 n n 
C5' "H5'2" GNH sing 143 n n 
C5' "H5'1" GNH sing 144 n n 
C4' O4' GNH sing 145 n n 
C4' C3' GNH sing 146 n n 
C4' H4' GNH sing 147 n n 
O4' C1' GNH sing 148 n n 
C3' O3' GNH sing 149 n n 
C3' C2' GNH sing 150 n n 
C3' H3' GNH sing 151 n n 
O3' HO3' GNH sing 152 n n 
C2' O2' GNH sing 153 n n 
C2' C1' GNH sing 154 n n 
C2' H2' GNH sing 155 n n 
O2' HO2' GNH sing 156 n n 
C1' N9 GNH sing 157 n n 
C1' H1' GNH sing 158 n n 
N9 C8 GNH sing 159 n y 
N9 C4 GNH sing 160 n y 
C8 N7 GNH doub 161 n y 
C8 H8 GNH sing 162 n n 
N7 C5 GNH sing 163 n y 
C5 C6 GNH sing 164 n y 
C5 C4 GNH doub 165 n y 
C6 O6 GNH doub 166 n n 
C6 N1 GNH sing 167 n y 
N1 C2 GNH sing 168 n y 
N1 HN1 GNH sing 169 n n 
C2 N2 GNH sing 170 n n 
C2 N3 GNH doub 171 n y 
N2 HN21 GNH sing 172 n n 
N2 HN22 GNH sing 173 n n 
N3 C4 GNH sing 174 n y 
#
_atom_sites.entry_id                     4R98 
_atom_sites.fract_transf_matrix[1][1]    0.020639 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020639 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GNH A 1 300 300 GNH GNH . 
D 3 HOH A 1 401 1 HOH HOH . 
D 3 HOH A 2 402 2 HOH HOH . 
D 3 HOH A 3 403 4 HOH HOH . 
D 3 HOH A 4 404 7 HOH HOH . 
D 3 HOH A 5 405 9 HOH HOH . 
D 3 HOH A 6 406 10 HOH HOH . 
D 3 HOH A 7 407 12 HOH HOH . 
D 3 HOH A 8 408 13 HOH HOH . 
D 3 HOH A 9 409 16 HOH HOH . 
D 3 HOH A 10 410 19 HOH HOH . 
D 3 HOH A 11 411 20 HOH HOH . 
D 3 HOH A 12 412 21 HOH HOH . 
D 3 HOH A 13 413 22 HOH HOH . 
D 3 HOH A 14 414 24 HOH HOH . 
D 3 HOH A 15 415 25 HOH HOH . 
D 3 HOH A 16 416 27 HOH HOH . 
D 3 HOH A 17 417 28 HOH HOH . 
D 3 HOH A 18 418 30 HOH HOH . 
E 3 HOH B 1 301 3 HOH HOH . 
E 3 HOH B 2 302 5 HOH HOH . 
E 3 HOH B 3 303 8 HOH HOH . 
E 3 HOH B 4 304 11 HOH HOH . 
E 3 HOH B 5 305 14 HOH HOH . 
E 3 HOH B 6 306 17 HOH HOH . 
E 3 HOH B 7 307 18 HOH HOH . 
E 3 HOH B 8 308 26 HOH HOH . 
E 3 HOH B 9 309 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3B GNH . . . C 2 13.284 8.999 -10.388 1 37.87 ? N3B GNH 300 A 1 
HETATM 2 P PB GNH . . . C 2 12.914 7.293 -10.269 1 37.78 ? PB GNH 300 A 1 
HETATM 3 O O1B GNH . . . C 2 12.303 7.012 -8.95 1 38.02 ? O1B GNH 300 A 1 
HETATM 4 O O2B GNH . . . C 2 11.875 6.886 -11.425 1 38 ? O2B GNH 300 A 1 
HETATM 5 O O3A GNH . . . C 2 14.263 6.429 -10.424 1 37.92 ? O3A GNH 300 A 1 
HETATM 6 P PA GNH . . . C 2 14.888 6.122 -11.876 1 37.81 ? PA GNH 300 A 1 
HETATM 7 O O1A GNH . . . C 2 14.174 4.931 -12.469 1 37.7 ? O1A GNH 300 A 1 
HETATM 8 O O2A GNH . . . C 2 14.946 7.416 -12.653 1 37.95 ? O2A GNH 300 A 1 
HETATM 9 O O5' GNH . . . C 2 16.394 5.681 -11.517 1 37.97 ? O5' GNH 300 A 1 
HETATM 10 C C5' GNH . . . C 2 17.251 6.568 -10.8 1 37.94 ? C5' GNH 300 A 1 
HETATM 11 C C4' GNH . . . C 2 18.71 6.184 -11.011 1 37.97 ? C4' GNH 300 A 1 
HETATM 12 O O4' GNH . . . C 2 18.978 4.924 -10.39 1 38.06 ? O4' GNH 300 A 1 
HETATM 13 C C3' GNH . . . C 2 19.069 6.039 -12.482 1 38.04 ? C3' GNH 300 A 1 
HETATM 14 O O3' GNH . . . C 2 20.324 6.678 -12.727 1 37.96 ? O3' GNH 300 A 1 
HETATM 15 C C2' GNH . . . C 2 19.155 4.542 -12.72 1 38 ? C2' GNH 300 A 1 
HETATM 16 O O2' GNH . . . C 2 20.161 4.201 -13.679 1 38.03 ? O2' GNH 300 A 1 
HETATM 17 C C1' GNH . . . C 2 19.486 3.984 -11.343 1 37.96 ? C1' GNH 300 A 1 
HETATM 18 N N9 GNH . . . C 2 18.899 2.643 -11.087 1 37.96 ? N9 GNH 300 A 1 
HETATM 19 C C8 GNH . . . C 2 17.616 2.27 -11.251 1 37.87 ? C8 GNH 300 A 1 
HETATM 20 N N7 GNH . . . C 2 17.445 0.966 -10.906 1 37.89 ? N7 GNH 300 A 1 
HETATM 21 C C5 GNH . . . C 2 18.637 0.489 -10.505 1 37.94 ? C5 GNH 300 A 1 
HETATM 22 C C6 GNH . . . C 2 19.173 -0.803 -10.008 1 37.91 ? C6 GNH 300 A 1 
HETATM 23 O O6 GNH . . . C 2 18.427 -1.798 -9.878 1 37.85 ? O6 GNH 300 A 1 
HETATM 24 N N1 GNH . . . C 2 20.479 -0.874 -9.702 1 37.92 ? N1 GNH 300 A 1 
HETATM 25 C C2 GNH . . . C 2 21.307 0.187 -9.834 1 37.97 ? C2 GNH 300 A 1 
HETATM 26 N N2 GNH . . . C 2 22.617 0.06 -9.511 1 38 ? N2 GNH 300 A 1 
HETATM 27 N N3 GNH . . . C 2 20.883 1.398 -10.282 1 38 ? N3 GNH 300 A 1 
HETATM 28 C C4 GNH . . . C 2 19.589 1.602 -10.625 1 38 ? C4 GNH 300 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#