data_4R9U # _model_server_result.job_id Z3kiNvJs476U3h9tNbBdxQ _model_server_result.datetime_utc '2024-10-15 09:17:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4R9U # _exptl.entry_id 4R9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.92 _cell.angle_gamma 90 _cell.entry_id 4R9U _cell.length_a 372.85 _cell.length_b 113.21 _cell.length_c 69.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 162 C CYS 162 1_555 D SG CYS 162 D CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 C OG SER 40 C SER 40 1_555 J MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc2 C OE1 GLN 80 C GLN 80 1_555 J MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc3 I O2B ANP . C ANP 301 1_555 J MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc4 I O3G ANP . C ANP 301 1_555 J MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc5 D OG SER 40 D SER 40 1_555 L MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc6 K O3G ANP . D ANP 301 1_555 L MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc7 K O2B ANP . D ANP 301 1_555 L MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 221 n n N1 CM1 LDA sing 222 n n N1 CM2 LDA sing 223 n n N1 C1 LDA sing 224 n n CM1 HM11 LDA sing 225 n n CM1 HM12 LDA sing 226 n n CM1 HM13 LDA sing 227 n n CM2 HM21 LDA sing 228 n n CM2 HM22 LDA sing 229 n n CM2 HM23 LDA sing 230 n n C1 C2 LDA sing 231 n n C1 H11 LDA sing 232 n n C1 H12 LDA sing 233 n n C2 C3 LDA sing 234 n n C2 H21 LDA sing 235 n n C2 H22 LDA sing 236 n n C3 C4 LDA sing 237 n n C3 H31 LDA sing 238 n n C3 H32 LDA sing 239 n n C4 C5 LDA sing 240 n n C4 H41 LDA sing 241 n n C4 H42 LDA sing 242 n n C5 C6 LDA sing 243 n n C5 H51 LDA sing 244 n n C5 H52 LDA sing 245 n n C6 C7 LDA sing 246 n n C6 H61 LDA sing 247 n n C6 H62 LDA sing 248 n n C7 C8 LDA sing 249 n n C7 H71 LDA sing 250 n n C7 H72 LDA sing 251 n n C8 C9 LDA sing 252 n n C8 H81 LDA sing 253 n n C8 H82 LDA sing 254 n n C9 C10 LDA sing 255 n n C9 H91 LDA sing 256 n n C9 H92 LDA sing 257 n n C10 C11 LDA sing 258 n n C10 H101 LDA sing 259 n n C10 H102 LDA sing 260 n n C11 C12 LDA sing 261 n n C11 H111 LDA sing 262 n n C11 H112 LDA sing 263 n n C12 H121 LDA sing 264 n n C12 H122 LDA sing 265 n n C12 H123 LDA sing 266 n n # _atom_sites.entry_id 4R9U _atom_sites.fract_transf_matrix[1][1] 0.002682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000231 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 LDA A 1 501 501 LDA LDA . F 3 LDA A 1 502 502 LDA LDA . G 3 LDA B 1 501 501 LDA LDA . H 3 LDA B 1 502 502 LDA LDA . I 4 ANP C 1 301 301 ANP ANP . J 5 MG C 1 302 302 MG MG . K 4 ANP D 1 301 301 ANP ANP . L 5 MG D 1 302 302 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . E 3 -85.506 51.77 30.252 1 111.64 ? N1 LDA 501 A 1 HETATM 2 O O1 LDA . . . E 3 -85.803 51.72 29.033 1 111.98 ? O1 LDA 501 A 1 HETATM 3 C CM1 LDA . . . E 3 -86.556 51.068 31.018 1 115.74 ? CM1 LDA 501 A 1 HETATM 4 C CM2 LDA . . . E 3 -85.456 53.171 30.708 1 110.33 ? CM2 LDA 501 A 1 HETATM 5 C C1 LDA . . . E 3 -84.205 51.146 30.481 1 102.65 ? C1 LDA 501 A 1 HETATM 6 C C2 LDA . . . E 3 -84.371 49.688 30.046 1 92.93 ? C2 LDA 501 A 1 HETATM 7 C C3 LDA . . . E 3 -83.807 48.694 31.059 1 84.34 ? C3 LDA 501 A 1 HETATM 8 C C4 LDA . . . E 3 -82.525 48.073 30.507 1 81.07 ? C4 LDA 501 A 1 HETATM 9 C C5 LDA . . . E 3 -81.464 47.889 31.584 1 75.56 ? C5 LDA 501 A 1 HETATM 10 C C6 LDA . . . E 3 -81.452 46.477 32.143 1 71.96 ? C6 LDA 501 A 1 HETATM 11 C C7 LDA . . . E 3 -80.015 46.095 32.47 1 72.18 ? C7 LDA 501 A 1 HETATM 12 C C8 LDA . . . E 3 -79.817 44.59 32.375 1 71.11 ? C8 LDA 501 A 1 HETATM 13 C C9 LDA . . . E 3 -78.331 44.259 32.439 1 71.27 ? C9 LDA 501 A 1 HETATM 14 C C10 LDA . . . E 3 -78.035 43.279 33.567 1 72.34 ? C10 LDA 501 A 1 HETATM 15 C C11 LDA . . . E 3 -76.587 42.806 33.471 1 76.8 ? C11 LDA 501 A 1 HETATM 16 C C12 LDA . . . E 3 -76.354 41.475 34.183 1 81.09 ? C12 LDA 501 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #