data_4R9X # _model_server_result.job_id AOGTahm3QyAutmmDkqy9Qw _model_server_result.datetime_utc '2025-01-10 06:51:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4r9x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 4R9X # _exptl.entry_id 4R9X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4R9X _cell.length_a 58.335 _cell.length_b 58.335 _cell.length_c 118.967 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4R9X _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 29.1675 -50.519592 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C VAL 54 A VAL 54 1_555 A N MSE 55 A MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C MSE 55 A MSE 55 1_555 A N ILE 56 A ILE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C GLU 71 A GLU 71 1_555 A N MSE 72 A MSE 72 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C GLU 71 A GLU 71 1_555 A N MSE 72 A MSE 72 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 72 A MSE 72 1_555 A N MSE 73 A MSE 73 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C MSE 72 A MSE 72 1_555 A N MSE 73 A MSE 73 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 73 A MSE 73 1_555 A N LYS 74 A LYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C ALA 131 A ALA 131 1_555 A N MSE 132 A MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C MSE 132 A MSE 132 1_555 A N ARG 133 A ARG 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C ASP 162 A ASP 162 1_555 A N MSE 163 A MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 163 A MSE 163 1_555 A N GLN 164 A GLN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C MSE 1 B MSE 1 1_555 B N LEU 2 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C VAL 54 B VAL 54 1_555 B N MSE 55 B MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 B C MSE 55 B MSE 55 1_555 B N ILE 56 B ILE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale16 B C GLU 71 B GLU 71 1_555 B N MSE 72 B MSE 72 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.324 ? covale ? covale17 B C GLU 71 B GLU 71 1_555 B N MSE 72 B MSE 72 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 72 B MSE 72 1_555 B N MSE 73 B MSE 73 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C MSE 72 B MSE 72 1_555 B N MSE 73 B MSE 73 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 B C MSE 73 B MSE 73 1_555 B N LYS 74 B LYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale21 B C ALA 131 B ALA 131 1_555 B N MSE 132 B MSE 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 B C MSE 132 B MSE 132 1_555 B N ARG 133 B ARG 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 B C ASP 162 B ASP 162 1_555 B N MSE 163 B MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale24 B C MSE 163 B MSE 163 1_555 B N GLN 164 B GLN 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A O VAL 45 A VAL 45 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 A O VAL 48 A VAL 48 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc3 A OE2 GLU 71 A GLU 71 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 A OD2 ASP 106 A ASP 106 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc5 D CA CA . A CA 302 1_555 I O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc6 D CA CA . A CA 302 1_555 I O HOH . A HOH 464 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc7 D CA CA . A CA 302 1_555 B OE1 GLU 190 B GLU 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc8 D CA CA . A CA 302 1_555 B OE2 GLU 190 B GLU 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc9 D CA CA . A CA 302 1_555 J O HOH . B HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc10 E CA CA . A CA 303 1_555 I O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc11 B O VAL 45 B VAL 45 1_555 G CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc12 B O VAL 48 B VAL 48 1_555 G CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc13 G CA CA . B CA 302 1_555 J O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc14 G CA CA . B CA 302 1_555 J O HOH . B HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc15 G CA CA . B CA 302 1_555 J O HOH . B HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4R9X _atom_sites.fract_transf_matrix[1][1] 0.017142 _atom_sites.fract_transf_matrix[1][2] 0.009897 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGE A 1 301 241 PGE PGE . D 3 CA A 1 302 242 CA CA . E 3 CA A 1 303 243 CA CA . F 4 GOL B 1 301 241 GOL GOL . G 3 CA B 1 302 242 CA CA . H 5 EDO B 1 303 243 EDO EDO . I 6 HOH A 1 401 1 HOH HOH . I 6 HOH A 2 402 2 HOH HOH . I 6 HOH A 3 403 3 HOH HOH . I 6 HOH A 4 404 4 HOH HOH . I 6 HOH A 5 405 5 HOH HOH . I 6 HOH A 6 406 6 HOH HOH . I 6 HOH A 7 407 7 HOH HOH . I 6 HOH A 8 408 8 HOH HOH . I 6 HOH A 9 409 9 HOH HOH . I 6 HOH A 10 410 10 HOH HOH . I 6 HOH A 11 411 11 HOH HOH . I 6 HOH A 12 412 12 HOH HOH . I 6 HOH A 13 413 13 HOH HOH . I 6 HOH A 14 414 14 HOH HOH . I 6 HOH A 15 415 15 HOH HOH . I 6 HOH A 16 416 16 HOH HOH . I 6 HOH A 17 417 17 HOH HOH . I 6 HOH A 18 418 18 HOH HOH . I 6 HOH A 19 419 19 HOH HOH . I 6 HOH A 20 420 20 HOH HOH . I 6 HOH A 21 421 21 HOH HOH . I 6 HOH A 22 422 22 HOH HOH . I 6 HOH A 23 423 23 HOH HOH . I 6 HOH A 24 424 24 HOH HOH . I 6 HOH A 25 425 25 HOH HOH . I 6 HOH A 26 426 26 HOH HOH . I 6 HOH A 27 427 27 HOH HOH . I 6 HOH A 28 428 28 HOH HOH . I 6 HOH A 29 429 29 HOH HOH . I 6 HOH A 30 430 30 HOH HOH . I 6 HOH A 31 431 31 HOH HOH . I 6 HOH A 32 432 32 HOH HOH . I 6 HOH A 33 433 33 HOH HOH . I 6 HOH A 34 434 34 HOH HOH . I 6 HOH A 35 435 35 HOH HOH . I 6 HOH A 36 436 37 HOH HOH . I 6 HOH A 37 437 38 HOH HOH . I 6 HOH A 38 438 39 HOH HOH . I 6 HOH A 39 439 40 HOH HOH . I 6 HOH A 40 440 41 HOH HOH . I 6 HOH A 41 441 42 HOH HOH . I 6 HOH A 42 442 43 HOH HOH . I 6 HOH A 43 443 44 HOH HOH . I 6 HOH A 44 444 45 HOH HOH . I 6 HOH A 45 445 46 HOH HOH . I 6 HOH A 46 446 47 HOH HOH . I 6 HOH A 47 447 48 HOH HOH . I 6 HOH A 48 448 49 HOH HOH . I 6 HOH A 49 449 50 HOH HOH . I 6 HOH A 50 450 52 HOH HOH . I 6 HOH A 51 451 53 HOH HOH . I 6 HOH A 52 452 54 HOH HOH . I 6 HOH A 53 453 55 HOH HOH . I 6 HOH A 54 454 56 HOH HOH . I 6 HOH A 55 455 57 HOH HOH . I 6 HOH A 56 456 58 HOH HOH . I 6 HOH A 57 457 59 HOH HOH . I 6 HOH A 58 458 60 HOH HOH . I 6 HOH A 59 459 119 HOH HOH . I 6 HOH A 60 460 120 HOH HOH . I 6 HOH A 61 461 121 HOH HOH . I 6 HOH A 62 462 122 HOH HOH . I 6 HOH A 63 463 123 HOH HOH . I 6 HOH A 64 464 124 HOH HOH . I 6 HOH A 65 465 131 HOH HOH . I 6 HOH A 66 466 132 HOH HOH . I 6 HOH A 67 467 133 HOH HOH . I 6 HOH A 68 468 135 HOH HOH . I 6 HOH A 69 469 136 HOH HOH . I 6 HOH A 70 470 137 HOH HOH . I 6 HOH A 71 471 139 HOH HOH . I 6 HOH A 72 472 140 HOH HOH . I 6 HOH A 73 473 141 HOH HOH . I 6 HOH A 74 474 142 HOH HOH . I 6 HOH A 75 475 144 HOH HOH . I 6 HOH A 76 476 146 HOH HOH . I 6 HOH A 77 477 147 HOH HOH . I 6 HOH A 78 478 148 HOH HOH . I 6 HOH A 79 479 154 HOH HOH . I 6 HOH A 80 480 156 HOH HOH . I 6 HOH A 81 481 157 HOH HOH . I 6 HOH A 82 482 159 HOH HOH . I 6 HOH A 83 483 163 HOH HOH . J 6 HOH B 1 401 36 HOH HOH . J 6 HOH B 2 402 51 HOH HOH . J 6 HOH B 3 403 61 HOH HOH . J 6 HOH B 4 404 62 HOH HOH . J 6 HOH B 5 405 63 HOH HOH . J 6 HOH B 6 406 64 HOH HOH . J 6 HOH B 7 407 65 HOH HOH . J 6 HOH B 8 408 66 HOH HOH . J 6 HOH B 9 409 67 HOH HOH . J 6 HOH B 10 410 68 HOH HOH . J 6 HOH B 11 411 69 HOH HOH . J 6 HOH B 12 412 70 HOH HOH . J 6 HOH B 13 413 71 HOH HOH . J 6 HOH B 14 414 72 HOH HOH . J 6 HOH B 15 415 73 HOH HOH . J 6 HOH B 16 416 74 HOH HOH . J 6 HOH B 17 417 75 HOH HOH . J 6 HOH B 18 418 76 HOH HOH . J 6 HOH B 19 419 77 HOH HOH . J 6 HOH B 20 420 78 HOH HOH . J 6 HOH B 21 421 79 HOH HOH . J 6 HOH B 22 422 80 HOH HOH . J 6 HOH B 23 423 81 HOH HOH . J 6 HOH B 24 424 82 HOH HOH . J 6 HOH B 25 425 83 HOH HOH . J 6 HOH B 26 426 84 HOH HOH . J 6 HOH B 27 427 85 HOH HOH . J 6 HOH B 28 428 86 HOH HOH . J 6 HOH B 29 429 87 HOH HOH . J 6 HOH B 30 430 88 HOH HOH . J 6 HOH B 31 431 89 HOH HOH . J 6 HOH B 32 432 90 HOH HOH . J 6 HOH B 33 433 91 HOH HOH . J 6 HOH B 34 434 92 HOH HOH . J 6 HOH B 35 435 93 HOH HOH . J 6 HOH B 36 436 94 HOH HOH . J 6 HOH B 37 437 95 HOH HOH . J 6 HOH B 38 438 96 HOH HOH . J 6 HOH B 39 439 97 HOH HOH . J 6 HOH B 40 440 98 HOH HOH . J 6 HOH B 41 441 99 HOH HOH . J 6 HOH B 42 442 100 HOH HOH . J 6 HOH B 43 443 101 HOH HOH . J 6 HOH B 44 444 102 HOH HOH . J 6 HOH B 45 445 103 HOH HOH . J 6 HOH B 46 446 104 HOH HOH . J 6 HOH B 47 447 105 HOH HOH . J 6 HOH B 48 448 106 HOH HOH . J 6 HOH B 49 449 107 HOH HOH . J 6 HOH B 50 450 108 HOH HOH . J 6 HOH B 51 451 109 HOH HOH . J 6 HOH B 52 452 110 HOH HOH . J 6 HOH B 53 453 111 HOH HOH . J 6 HOH B 54 454 112 HOH HOH . J 6 HOH B 55 455 113 HOH HOH . J 6 HOH B 56 456 114 HOH HOH . J 6 HOH B 57 457 115 HOH HOH . J 6 HOH B 58 458 116 HOH HOH . J 6 HOH B 59 459 117 HOH HOH . J 6 HOH B 60 460 118 HOH HOH . J 6 HOH B 61 461 125 HOH HOH . J 6 HOH B 62 462 126 HOH HOH . J 6 HOH B 63 463 127 HOH HOH . J 6 HOH B 64 464 128 HOH HOH . J 6 HOH B 65 465 129 HOH HOH . J 6 HOH B 66 466 130 HOH HOH . J 6 HOH B 67 467 134 HOH HOH . J 6 HOH B 68 468 138 HOH HOH . J 6 HOH B 69 469 143 HOH HOH . J 6 HOH B 70 470 145 HOH HOH . J 6 HOH B 71 471 149 HOH HOH . J 6 HOH B 72 472 150 HOH HOH . J 6 HOH B 73 473 151 HOH HOH . J 6 HOH B 74 474 152 HOH HOH . J 6 HOH B 75 475 153 HOH HOH . J 6 HOH B 76 476 155 HOH HOH . J 6 HOH B 77 477 158 HOH HOH . J 6 HOH B 78 478 160 HOH HOH . J 6 HOH B 79 479 161 HOH HOH . J 6 HOH B 80 480 162 HOH HOH . J 6 HOH B 81 481 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 27.946 _atom_site.Cartn_y 18.783 _atom_site.Cartn_z 53.673 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #