data_4RA2 # _model_server_result.job_id Q-mTfOqoa59dAXpy5BkvAg _model_server_result.datetime_utc '2024-11-16 06:59:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ra2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4RA2 # _exptl.entry_id 4RA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RA2 _cell.length_a 90.714 _cell.length_b 90.714 _cell.length_c 105.443 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 59 A ASP 60 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A OD1 ASP 59 A ASP 60 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A O GLY 60 A GLY 61 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 A OD1 ASP 238 A ASP 239 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc5 A OD2 ASP 281 A ASP 282 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc6 B MN MN . A MN 401 1_555 E O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc7 B MN MN . A MN 401 1_555 E O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc8 B MN MN . A MN 401 1_555 E O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc9 C MN MN . A MN 402 1_555 E O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc10 C MN MN . A MN 402 1_555 E O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc11 C MN MN . A MN 402 1_555 E O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc12 C MN MN . A MN 402 1_555 E O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 4RA2 _atom_sites.fract_transf_matrix[1][1] 0.011024 _atom_sites.fract_transf_matrix[1][2] 0.006365 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 383 MN MN . C 2 MN A 1 402 384 MN MN . D 3 PO4 A 1 403 701 PO4 PO4 . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 2 HOH HOH . E 4 HOH A 3 503 3 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 5 HOH HOH . E 4 HOH A 6 506 6 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 8 HOH HOH . E 4 HOH A 9 509 9 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 11 HOH HOH . E 4 HOH A 12 512 12 HOH HOH . E 4 HOH A 13 513 13 HOH HOH . E 4 HOH A 14 514 14 HOH HOH . E 4 HOH A 15 515 15 HOH HOH . E 4 HOH A 16 516 16 HOH HOH . E 4 HOH A 17 517 17 HOH HOH . E 4 HOH A 18 518 18 HOH HOH . E 4 HOH A 19 519 19 HOH HOH . E 4 HOH A 20 520 20 HOH HOH . E 4 HOH A 21 521 21 HOH HOH . E 4 HOH A 22 522 22 HOH HOH . E 4 HOH A 23 523 23 HOH HOH . E 4 HOH A 24 524 24 HOH HOH . E 4 HOH A 25 525 25 HOH HOH . E 4 HOH A 26 526 26 HOH HOH . E 4 HOH A 27 527 27 HOH HOH . E 4 HOH A 28 528 28 HOH HOH . E 4 HOH A 29 529 29 HOH HOH . E 4 HOH A 30 530 30 HOH HOH . E 4 HOH A 31 531 31 HOH HOH . E 4 HOH A 32 532 32 HOH HOH . E 4 HOH A 33 533 33 HOH HOH . E 4 HOH A 34 534 34 HOH HOH . E 4 HOH A 35 535 35 HOH HOH . E 4 HOH A 36 536 36 HOH HOH . E 4 HOH A 37 537 37 HOH HOH . E 4 HOH A 38 538 38 HOH HOH . E 4 HOH A 39 539 39 HOH HOH . E 4 HOH A 40 540 40 HOH HOH . E 4 HOH A 41 541 41 HOH HOH . E 4 HOH A 42 542 42 HOH HOH . E 4 HOH A 43 543 43 HOH HOH . E 4 HOH A 44 544 44 HOH HOH . E 4 HOH A 45 545 45 HOH HOH . E 4 HOH A 46 546 46 HOH HOH . E 4 HOH A 47 547 47 HOH HOH . E 4 HOH A 48 548 48 HOH HOH . E 4 HOH A 49 549 49 HOH HOH . E 4 HOH A 50 550 50 HOH HOH . E 4 HOH A 51 551 51 HOH HOH . E 4 HOH A 52 552 52 HOH HOH . E 4 HOH A 53 553 53 HOH HOH . E 4 HOH A 54 554 54 HOH HOH . E 4 HOH A 55 555 55 HOH HOH . E 4 HOH A 56 556 56 HOH HOH . E 4 HOH A 57 557 57 HOH HOH . E 4 HOH A 58 558 58 HOH HOH . E 4 HOH A 59 559 59 HOH HOH . E 4 HOH A 60 560 60 HOH HOH . E 4 HOH A 61 561 61 HOH HOH . E 4 HOH A 62 562 62 HOH HOH . E 4 HOH A 63 563 63 HOH HOH . E 4 HOH A 64 564 64 HOH HOH . E 4 HOH A 65 565 65 HOH HOH . E 4 HOH A 66 566 66 HOH HOH . E 4 HOH A 67 567 67 HOH HOH . E 4 HOH A 68 568 68 HOH HOH . E 4 HOH A 69 569 69 HOH HOH . E 4 HOH A 70 570 70 HOH HOH . E 4 HOH A 71 571 71 HOH HOH . E 4 HOH A 72 572 72 HOH HOH . E 4 HOH A 73 573 73 HOH HOH . E 4 HOH A 74 574 74 HOH HOH . E 4 HOH A 75 575 75 HOH HOH . E 4 HOH A 76 576 76 HOH HOH . E 4 HOH A 77 577 77 HOH HOH . E 4 HOH A 78 578 78 HOH HOH . E 4 HOH A 79 579 79 HOH HOH . E 4 HOH A 80 580 80 HOH HOH . E 4 HOH A 81 581 81 HOH HOH . E 4 HOH A 82 582 82 HOH HOH . E 4 HOH A 83 583 83 HOH HOH . E 4 HOH A 84 584 84 HOH HOH . E 4 HOH A 85 585 85 HOH HOH . E 4 HOH A 86 586 86 HOH HOH . E 4 HOH A 87 587 87 HOH HOH . E 4 HOH A 88 588 88 HOH HOH . E 4 HOH A 89 589 89 HOH HOH . E 4 HOH A 90 590 90 HOH HOH . E 4 HOH A 91 591 91 HOH HOH . E 4 HOH A 92 592 92 HOH HOH . E 4 HOH A 93 593 93 HOH HOH . E 4 HOH A 94 594 94 HOH HOH . E 4 HOH A 95 595 95 HOH HOH . E 4 HOH A 96 596 96 HOH HOH . E 4 HOH A 97 597 97 HOH HOH . E 4 HOH A 98 598 98 HOH HOH . E 4 HOH A 99 599 99 HOH HOH . E 4 HOH A 100 600 100 HOH HOH . E 4 HOH A 101 601 101 HOH HOH . E 4 HOH A 102 602 102 HOH HOH . E 4 HOH A 103 603 103 HOH HOH . E 4 HOH A 104 604 104 HOH HOH . E 4 HOH A 105 605 105 HOH HOH . E 4 HOH A 106 606 106 HOH HOH . E 4 HOH A 107 607 107 HOH HOH . E 4 HOH A 108 608 108 HOH HOH . E 4 HOH A 109 609 109 HOH HOH . E 4 HOH A 110 610 110 HOH HOH . E 4 HOH A 111 611 111 HOH HOH . E 4 HOH A 112 612 112 HOH HOH . E 4 HOH A 113 613 113 HOH HOH . E 4 HOH A 114 614 114 HOH HOH . E 4 HOH A 115 615 115 HOH HOH . E 4 HOH A 116 616 116 HOH HOH . E 4 HOH A 117 617 117 HOH HOH . E 4 HOH A 118 618 119 HOH HOH . E 4 HOH A 119 619 120 HOH HOH . E 4 HOH A 120 620 121 HOH HOH . E 4 HOH A 121 621 122 HOH HOH . E 4 HOH A 122 622 123 HOH HOH . E 4 HOH A 123 623 124 HOH HOH . E 4 HOH A 124 624 125 HOH HOH . E 4 HOH A 125 625 126 HOH HOH . E 4 HOH A 126 626 127 HOH HOH . E 4 HOH A 127 627 128 HOH HOH . E 4 HOH A 128 628 129 HOH HOH . E 4 HOH A 129 629 130 HOH HOH . E 4 HOH A 130 630 131 HOH HOH . E 4 HOH A 131 631 132 HOH HOH . E 4 HOH A 132 632 133 HOH HOH . E 4 HOH A 133 633 134 HOH HOH . E 4 HOH A 134 634 135 HOH HOH . E 4 HOH A 135 635 136 HOH HOH . E 4 HOH A 136 636 137 HOH HOH . E 4 HOH A 137 637 138 HOH HOH . E 4 HOH A 138 638 139 HOH HOH . E 4 HOH A 139 639 140 HOH HOH . E 4 HOH A 140 640 141 HOH HOH . E 4 HOH A 141 641 142 HOH HOH . E 4 HOH A 142 642 143 HOH HOH . E 4 HOH A 143 643 144 HOH HOH . E 4 HOH A 144 644 145 HOH HOH . E 4 HOH A 145 645 146 HOH HOH . E 4 HOH A 146 646 147 HOH HOH . E 4 HOH A 147 647 148 HOH HOH . E 4 HOH A 148 648 149 HOH HOH . E 4 HOH A 149 649 150 HOH HOH . E 4 HOH A 150 650 151 HOH HOH . E 4 HOH A 151 651 152 HOH HOH . E 4 HOH A 152 652 153 HOH HOH . E 4 HOH A 153 653 154 HOH HOH . E 4 HOH A 154 654 155 HOH HOH . E 4 HOH A 155 655 156 HOH HOH . E 4 HOH A 156 656 157 HOH HOH . E 4 HOH A 157 657 158 HOH HOH . E 4 HOH A 158 658 159 HOH HOH . E 4 HOH A 159 659 160 HOH HOH . E 4 HOH A 160 660 161 HOH HOH . E 4 HOH A 161 661 162 HOH HOH . E 4 HOH A 162 662 163 HOH HOH . E 4 HOH A 163 663 164 HOH HOH . E 4 HOH A 164 664 165 HOH HOH . E 4 HOH A 165 665 166 HOH HOH . E 4 HOH A 166 666 167 HOH HOH . E 4 HOH A 167 667 168 HOH HOH . E 4 HOH A 168 668 169 HOH HOH . E 4 HOH A 169 669 170 HOH HOH . E 4 HOH A 170 670 171 HOH HOH . E 4 HOH A 171 671 172 HOH HOH . E 4 HOH A 172 672 173 HOH HOH . E 4 HOH A 173 673 174 HOH HOH . E 4 HOH A 174 674 175 HOH HOH . E 4 HOH A 175 675 176 HOH HOH . E 4 HOH A 176 676 177 HOH HOH . E 4 HOH A 177 677 178 HOH HOH . E 4 HOH A 178 678 179 HOH HOH . E 4 HOH A 179 679 180 HOH HOH . E 4 HOH A 180 680 181 HOH HOH . E 4 HOH A 181 681 182 HOH HOH . E 4 HOH A 182 682 183 HOH HOH . E 4 HOH A 183 683 184 HOH HOH . E 4 HOH A 184 684 185 HOH HOH . E 4 HOH A 185 685 186 HOH HOH . E 4 HOH A 186 686 187 HOH HOH . E 4 HOH A 187 687 188 HOH HOH . E 4 HOH A 188 688 189 HOH HOH . E 4 HOH A 189 689 190 HOH HOH . E 4 HOH A 190 690 191 HOH HOH . E 4 HOH A 191 691 192 HOH HOH . E 4 HOH A 192 692 193 HOH HOH . E 4 HOH A 193 693 194 HOH HOH . E 4 HOH A 194 694 195 HOH HOH . E 4 HOH A 195 695 196 HOH HOH . E 4 HOH A 196 696 197 HOH HOH . E 4 HOH A 197 697 199 HOH HOH . E 4 HOH A 198 698 200 HOH HOH . E 4 HOH A 199 699 201 HOH HOH . E 4 HOH A 200 700 202 HOH HOH . E 4 HOH A 201 701 203 HOH HOH . E 4 HOH A 202 702 204 HOH HOH . E 4 HOH A 203 703 205 HOH HOH . E 4 HOH A 204 704 206 HOH HOH . E 4 HOH A 205 705 207 HOH HOH . E 4 HOH A 206 706 208 HOH HOH . E 4 HOH A 207 707 209 HOH HOH . E 4 HOH A 208 708 210 HOH HOH . E 4 HOH A 209 709 211 HOH HOH . E 4 HOH A 210 710 212 HOH HOH . E 4 HOH A 211 711 213 HOH HOH . E 4 HOH A 212 712 214 HOH HOH . E 4 HOH A 213 713 215 HOH HOH . E 4 HOH A 214 714 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 11.318 -38.372 -13.159 1 51.39 ? P PO4 403 A 1 HETATM 2 O O1 PO4 . . . D 3 10.111 -38.776 -12.359 1 53.49 ? O1 PO4 403 A 1 HETATM 3 O O2 PO4 . . . D 3 11.267 -39.055 -14.512 1 55.9 ? O2 PO4 403 A 1 HETATM 4 O O3 PO4 . . . D 3 12.545 -38.797 -12.375 1 61.04 ? O3 PO4 403 A 1 HETATM 5 O O4 PO4 . . . D 3 11.401 -36.87 -13.361 1 55.11 ? O4 PO4 403 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #