data_4RA3 # _model_server_result.job_id DSXM0sB_nHbrf3Npg_Ufqw _model_server_result.datetime_utc '2024-11-19 09:45:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ra3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 4RA3 # _exptl.entry_id 4RA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RA3 _cell.length_a 80.038 _cell.length_b 80.038 _cell.length_c 177.7 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I 1 1 B,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 25 1_555 A SG CYS 81 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 34 A CYS 33 1_555 C SG CYS 34 C CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 C SG CYS 26 C CYS 25 1_555 C SG CYS 81 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 D SG CYS 26 D CYS 25 1_555 D SG CYS 81 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C17 H19 N2 S 1' _chem_comp.formula_weight 283.411 _chem_comp.id TFX _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Thioflavin T' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C8 TFX doub 288 n y N1 C9 TFX sing 289 n y N1 C17 TFX sing 290 n n S1 C8 TFX sing 291 n y S1 C10 TFX sing 292 n y C2 N2 TFX sing 293 n n C2 C3 TFX doub 294 n y C2 C7 TFX sing 295 n y N2 C15 TFX sing 296 n n N2 C16 TFX sing 297 n n C3 C4 TFX sing 298 n y C4 C5 TFX doub 299 n y C5 C6 TFX sing 300 n y C5 C8 TFX sing 301 n y C6 C7 TFX doub 302 n y C9 C10 TFX doub 303 n y C9 C14 TFX sing 304 n y C10 C11 TFX sing 305 n y C11 C12 TFX doub 306 n y C12 C13 TFX sing 307 n y C12 C18 TFX sing 308 n n C13 C14 TFX doub 309 n y C3 H3 TFX sing 310 n n C4 H4 TFX sing 311 n n C6 H6 TFX sing 312 n n C7 H7 TFX sing 313 n n C11 H11 TFX sing 314 n n C13 H13 TFX sing 315 n n C14 H14 TFX sing 316 n n C15 H15 TFX sing 317 n n C15 H15A TFX sing 318 n n C15 H15B TFX sing 319 n n C16 H16 TFX sing 320 n n C16 H16A TFX sing 321 n n C16 H16B TFX sing 322 n n C17 H17 TFX sing 323 n n C17 H17A TFX sing 324 n n C17 H17B TFX sing 325 n n C18 H18 TFX sing 326 n n C18 H18A TFX sing 327 n n C18 H18B TFX sing 328 n n # _atom_sites.entry_id 4RA3 _atom_sites.fract_transf_matrix[1][1] 0.012494 _atom_sites.fract_transf_matrix[1][2] 0.007213 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TFX A 1 101 1 TFX TFX . F 2 TFX A 1 102 1 TFX TFX . G 2 TFX B 1 101 1 TFX TFX . H 2 TFX B 1 102 1 TFX TFX . I 2 TFX C 1 101 1 TFX TFX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TFX . . . E 2 39.117 6.714 -17.8 1 89.37 ? N1 TFX 101 A 1 HETATM 2 S S1 TFX . . . E 2 39.428 4.394 -18.867 1 118.04 ? S1 TFX 101 A 1 HETATM 3 C C2 TFX . . . E 2 36.795 3.532 -14.525 1 92.93 ? C2 TFX 101 A 1 HETATM 4 N N2 TFX . . . E 2 36.065 2.948 -13.548 1 96 ? N2 TFX 101 A 1 HETATM 5 C C3 TFX . . . E 2 37.444 2.781 -15.454 1 92.95 ? C3 TFX 101 A 1 HETATM 6 C C4 TFX . . . E 2 38.117 3.381 -16.488 1 88.43 ? C4 TFX 101 A 1 HETATM 7 C C5 TFX . . . E 2 38.186 4.754 -16.568 1 90.58 ? C5 TFX 101 A 1 HETATM 8 C C6 TFX . . . E 2 37.598 5.501 -15.587 1 85.91 ? C6 TFX 101 A 1 HETATM 9 C C7 TFX . . . E 2 36.903 4.897 -14.575 1 84.58 ? C7 TFX 101 A 1 HETATM 10 C C8 TFX . . . E 2 38.845 5.426 -17.633 1 100.69 ? C8 TFX 101 A 1 HETATM 11 C C9 TFX . . . E 2 39.826 6.944 -18.929 1 107.2 ? C9 TFX 101 A 1 HETATM 12 C C10 TFX . . . E 2 40.077 5.742 -19.616 1 111.5 ? C10 TFX 101 A 1 HETATM 13 C C11 TFX . . . E 2 40.782 5.723 -20.785 1 120.54 ? C11 TFX 101 A 1 HETATM 14 C C12 TFX . . . E 2 41.243 6.906 -21.308 1 119.3 ? C12 TFX 101 A 1 HETATM 15 C C13 TFX . . . E 2 40.996 8.093 -20.644 1 105.6 ? C13 TFX 101 A 1 HETATM 16 C C14 TFX . . . E 2 40.297 8.126 -19.455 1 107.46 ? C14 TFX 101 A 1 HETATM 17 C C15 TFX . . . E 2 34.958 3.65 -12.963 1 105.05 ? C15 TFX 101 A 1 HETATM 18 C C16 TFX . . . E 2 36.639 1.936 -12.705 1 97.05 ? C16 TFX 101 A 1 HETATM 19 C C17 TFX . . . E 2 38.757 7.794 -16.884 1 97.62 ? C17 TFX 101 A 1 HETATM 20 C C18 TFX . . . E 2 41.988 6.905 -22.605 1 126.9 ? C18 TFX 101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #