data_4RA3
#
_model_server_result.job_id            yIdQJ90tw25ACO5aaU28UQ 
_model_server_result.datetime_utc      '2024-11-19 09:48:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ra3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":102}' 
#
_entry.id    4RA3 
#
_exptl.entry_id    4RA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              283.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4RA3 
_cell.length_a            80.038 
_cell.length_b            80.038 
_cell.length_c            177.7 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I 1 1 
B,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 25 1_555 A SG CYS 81 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 34 A CYS 33 1_555 C SG CYS 34 C CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 C SG CYS 26 C CYS 25 1_555 C SG CYS 81 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 D SG CYS 26 D CYS 25 1_555 D SG CYS 81 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C17 H19 N2 S 1' 
_chem_comp.formula_weight    283.411 
_chem_comp.id                TFX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Thioflavin T' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C8 TFX doub 288 n y 
N1 C9 TFX sing 289 n y 
N1 C17 TFX sing 290 n n 
S1 C8 TFX sing 291 n y 
S1 C10 TFX sing 292 n y 
C2 N2 TFX sing 293 n n 
C2 C3 TFX doub 294 n y 
C2 C7 TFX sing 295 n y 
N2 C15 TFX sing 296 n n 
N2 C16 TFX sing 297 n n 
C3 C4 TFX sing 298 n y 
C4 C5 TFX doub 299 n y 
C5 C6 TFX sing 300 n y 
C5 C8 TFX sing 301 n y 
C6 C7 TFX doub 302 n y 
C9 C10 TFX doub 303 n y 
C9 C14 TFX sing 304 n y 
C10 C11 TFX sing 305 n y 
C11 C12 TFX doub 306 n y 
C12 C13 TFX sing 307 n y 
C12 C18 TFX sing 308 n n 
C13 C14 TFX doub 309 n y 
C3 H3 TFX sing 310 n n 
C4 H4 TFX sing 311 n n 
C6 H6 TFX sing 312 n n 
C7 H7 TFX sing 313 n n 
C11 H11 TFX sing 314 n n 
C13 H13 TFX sing 315 n n 
C14 H14 TFX sing 316 n n 
C15 H15 TFX sing 317 n n 
C15 H15A TFX sing 318 n n 
C15 H15B TFX sing 319 n n 
C16 H16 TFX sing 320 n n 
C16 H16A TFX sing 321 n n 
C16 H16B TFX sing 322 n n 
C17 H17 TFX sing 323 n n 
C17 H17A TFX sing 324 n n 
C17 H17B TFX sing 325 n n 
C18 H18 TFX sing 326 n n 
C18 H18A TFX sing 327 n n 
C18 H18B TFX sing 328 n n 
#
_atom_sites.entry_id                     4RA3 
_atom_sites.fract_transf_matrix[1][1]    0.012494 
_atom_sites.fract_transf_matrix[1][2]    0.007213 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014427 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005627 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TFX A 1 101 1 TFX TFX . 
F 2 TFX A 1 102 1 TFX TFX . 
G 2 TFX B 1 101 1 TFX TFX . 
H 2 TFX B 1 102 1 TFX TFX . 
I 2 TFX C 1 101 1 TFX TFX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 TFX . . . F 2 40.293 -4.735 -13.884 1 102.23 ? N1 TFX 102 A 1 
HETATM 2 S S1 TFX . . . F 2 40.811 -4.029 -16.361 1 114.58 ? S1 TFX 102 A 1 
HETATM 3 C C2 TFX . . . F 2 38.341 -8.572 -16.851 1 93.11 ? C2 TFX 102 A 1 
HETATM 4 N N2 TFX . . . F 2 37.731 -9.698 -17.389 1 94.36 ? N2 TFX 102 A 1 
HETATM 5 C C3 TFX . . . F 2 39.039 -8.652 -15.648 1 93.38 ? C3 TFX 102 A 1 
HETATM 6 C C4 TFX . . . F 2 39.623 -7.524 -15.095 1 87.89 ? C4 TFX 102 A 1 
HETATM 7 C C5 TFX . . . F 2 39.541 -6.299 -15.745 1 97.64 ? C5 TFX 102 A 1 
HETATM 8 C C6 TFX . . . F 2 38.868 -6.218 -16.96 1 90.78 ? C6 TFX 102 A 1 
HETATM 9 C C7 TFX . . . F 2 38.275 -7.342 -17.51 1 95.78 ? C7 TFX 102 A 1 
HETATM 10 C C8 TFX . . . F 2 40.152 -5.116 -15.181 1 106.48 ? C8 TFX 102 A 1 
HETATM 11 C C9 TFX . . . F 2 40.964 -3.531 -13.779 1 102.43 ? C9 TFX 102 A 1 
HETATM 12 C C10 TFX . . . F 2 41.314 -3.031 -15.072 1 99.36 ? C10 TFX 102 A 1 
HETATM 13 C C11 TFX . . . F 2 41.996 -1.84 -15.212 1 96.4 ? C11 TFX 102 A 1 
HETATM 14 C C12 TFX . . . F 2 42.336 -1.108 -14.088 1 98.55 ? C12 TFX 102 A 1 
HETATM 15 C C13 TFX . . . F 2 41.987 -1.586 -12.826 1 102.76 ? C13 TFX 102 A 1 
HETATM 16 C C14 TFX . . . F 2 41.311 -2.788 -12.656 1 102.76 ? C14 TFX 102 A 1 
HETATM 17 C C15 TFX . . . F 2 36.799 -9.579 -18.5 1 94.83 ? C15 TFX 102 A 1 
HETATM 18 C C16 TFX . . . F 2 38.172 -11.037 -17.011 1 102.43 ? C16 TFX 102 A 1 
HETATM 19 C C17 TFX . . . F 2 39.771 -5.494 -12.729 1 112.83 ? C17 TFX 102 A 1 
HETATM 20 C C18 TFX . . . F 2 43.079 0.192 -14.231 1 105.31 ? C18 TFX 102 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           20 
#