data_4RA4 # _model_server_result.job_id VpOGYtFyNRDlcyjqfFNZXw _model_server_result.datetime_utc '2024-11-22 21:52:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ra4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4RA4 # _exptl.entry_id 4RA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.495 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R)-9-[(3S,4S)-1,3-dimethylpiperidin-4-yl]-8-(2-fluorophenyl)-1-methyl-3,5-dihydro[1,2,4]triazino[3,4-c][1,4]benzoxazin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.72 _cell.angle_gamma 90 _cell.entry_id 4RA4 _cell.length_a 112.412 _cell.length_b 44.468 _cell.length_c 85.502 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 179 A ARG 496 1_555 A N TPO 180 A TPO 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 180 A TPO 497 1_555 A N PHE 181 A PHE 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 A C LEU 320 A LEU 637 1_555 A N TPO 321 A TPO 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 A C TPO 321 A TPO 638 1_555 A N PRO 322 A PRO 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale5 A C PHE 339 A PHE 656 1_555 A N SEP 340 A SEP 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 A C SEP 340 A SEP 657 1_555 A N TYR 341 A TYR 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C24 H27 F N4 O2' _chem_comp.formula_weight 422.495 _chem_comp.id 3KZ _chem_comp.mon_nstd_flag . _chem_comp.name (1R)-9-[(3S,4S)-1,3-dimethylpiperidin-4-yl]-8-(2-fluorophenyl)-1-methyl-3,5-dihydro[1,2,4]triazino[3,4-c][1,4]benzoxazin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C27 3KZ doub 1 n y C28 C29 3KZ sing 2 n y C27 C26 3KZ sing 3 n y F30 C29 3KZ sing 4 n n C29 C24 3KZ doub 5 n y C19 C18 3KZ sing 6 n n C19 N20 3KZ sing 7 n n C26 C25 3KZ doub 8 n y C31 N20 3KZ sing 9 n n C18 C23 3KZ sing 10 n n C18 C12 3KZ sing 11 n n C24 C25 3KZ sing 12 n y C24 C2 3KZ sing 13 n n N20 C21 3KZ sing 14 n n C12 C1 3KZ sing 15 n n C12 C22 3KZ sing 16 n n C2 C1 3KZ doub 17 n y C2 C3 3KZ sing 18 n y C21 C22 3KZ sing 19 n n C1 C4 3KZ sing 20 n y C3 C6 3KZ doub 21 n y C4 C5 3KZ doub 22 n y C17 C13 3KZ sing 23 n n C6 C5 3KZ sing 24 n y C6 O7 3KZ sing 25 n n C5 N10 3KZ sing 26 n n O7 C8 3KZ sing 27 n n C13 N10 3KZ sing 28 n n C13 C14 3KZ sing 29 n n N10 C9 3KZ sing 30 n n C8 C9 3KZ sing 31 n n C9 N11 3KZ doub 32 n n C14 O15 3KZ doub 33 n n C14 N16 3KZ sing 34 n n N11 N16 3KZ sing 35 n n C26 H1 3KZ sing 36 n n C27 H2 3KZ sing 37 n n C25 H3 3KZ sing 38 n n C28 H4 3KZ sing 39 n n C3 H5 3KZ sing 40 n n C4 H6 3KZ sing 41 n n C8 H7 3KZ sing 42 n n C8 H8 3KZ sing 43 n n C22 H9 3KZ sing 44 n n C22 H10 3KZ sing 45 n n C21 H11 3KZ sing 46 n n C21 H12 3KZ sing 47 n n C19 H13 3KZ sing 48 n n C19 H14 3KZ sing 49 n n C12 H15 3KZ sing 50 n n C13 H16 3KZ sing 51 n n C18 H17 3KZ sing 52 n n C17 H18 3KZ sing 53 n n C17 H19 3KZ sing 54 n n C17 H20 3KZ sing 55 n n C23 H21 3KZ sing 56 n n C23 H22 3KZ sing 57 n n C23 H23 3KZ sing 58 n n C31 H24 3KZ sing 59 n n C31 H25 3KZ sing 60 n n C31 H26 3KZ sing 61 n n N16 H27 3KZ sing 62 n n # _atom_sites.entry_id 4RA4 _atom_sites.fract_transf_matrix[1][1] 0.008896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004095 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012876 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3KZ A 1 701 1 3KZ UNL . C 3 HOH A 1 801 1 HOH HOH . C 3 HOH A 2 802 3 HOH HOH . C 3 HOH A 3 803 4 HOH HOH . C 3 HOH A 4 804 5 HOH HOH . C 3 HOH A 5 805 6 HOH HOH . C 3 HOH A 6 806 8 HOH HOH . C 3 HOH A 7 807 10 HOH HOH . C 3 HOH A 8 808 12 HOH HOH . C 3 HOH A 9 809 13 HOH HOH . C 3 HOH A 10 810 14 HOH HOH . C 3 HOH A 11 811 15 HOH HOH . C 3 HOH A 12 812 16 HOH HOH . C 3 HOH A 13 813 18 HOH HOH . C 3 HOH A 14 814 19 HOH HOH . C 3 HOH A 15 815 20 HOH HOH . C 3 HOH A 16 816 26 HOH HOH . C 3 HOH A 17 817 28 HOH HOH . C 3 HOH A 18 818 29 HOH HOH . C 3 HOH A 19 819 30 HOH HOH . C 3 HOH A 20 820 31 HOH HOH . C 3 HOH A 21 821 34 HOH HOH . C 3 HOH A 22 822 36 HOH HOH . C 3 HOH A 23 823 37 HOH HOH . C 3 HOH A 24 824 41 HOH HOH . C 3 HOH A 25 825 42 HOH HOH . C 3 HOH A 26 826 43 HOH HOH . C 3 HOH A 27 827 45 HOH HOH . C 3 HOH A 28 828 46 HOH HOH . C 3 HOH A 29 829 47 HOH HOH . C 3 HOH A 30 830 55 HOH HOH . C 3 HOH A 31 831 57 HOH HOH . C 3 HOH A 32 832 59 HOH HOH . C 3 HOH A 33 833 60 HOH HOH . C 3 HOH A 34 834 61 HOH HOH . C 3 HOH A 35 835 64 HOH HOH . C 3 HOH A 36 836 69 HOH HOH . C 3 HOH A 37 837 71 HOH HOH . C 3 HOH A 38 838 73 HOH HOH . C 3 HOH A 39 839 77 HOH HOH . C 3 HOH A 40 840 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 3KZ . . . B 2 30.212 -10.896 9.929 1 49.67 ? C26 3KZ 701 A 1 HETATM 2 C C27 3KZ . . . B 2 30.647 -10.824 8.622 1 51.24 ? C27 3KZ 701 A 1 HETATM 3 C C25 3KZ . . . B 2 30.784 -10.092 10.894 1 49.65 ? C25 3KZ 701 A 1 HETATM 4 C C28 3KZ . . . B 2 31.653 -9.946 8.28 1 51.85 ? C28 3KZ 701 A 1 HETATM 5 C C3 3KZ . . . B 2 33.59 -8.694 12.114 1 52.83 ? C3 3KZ 701 A 1 HETATM 6 C C4 3KZ . . . B 2 32.327 -6.393 12.97 1 51.36 ? C4 3KZ 701 A 1 HETATM 7 C C24 3KZ . . . B 2 31.792 -9.206 10.566 1 51.48 ? C24 3KZ 701 A 1 HETATM 8 C C2 3KZ . . . B 2 32.366 -8.343 11.572 1 52.42 ? C2 3KZ 701 A 1 HETATM 9 C C1 3KZ . . . B 2 31.727 -7.182 12.006 1 51.71 ? C1 3KZ 701 A 1 HETATM 10 C C5 3KZ . . . B 2 33.552 -6.725 13.507 1 53.5 ? C5 3KZ 701 A 1 HETATM 11 C C6 3KZ . . . B 2 34.164 -7.891 13.077 1 55.2 ? C6 3KZ 701 A 1 HETATM 12 C C29 3KZ . . . B 2 32.222 -9.149 9.252 1 52.07 ? C29 3KZ 701 A 1 HETATM 13 C C9 3KZ . . . B 2 35.077 -6.534 15.21 1 57.12 ? C9 3KZ 701 A 1 HETATM 14 C C14 3KZ . . . B 2 34.732 -3.77 15.482 1 54.11 ? C14 3KZ 701 A 1 HETATM 15 C C8 3KZ . . . B 2 35.292 -7.983 15.033 1 56.4 ? C8 3KZ 701 A 1 HETATM 16 C C22 3KZ . . . B 2 29.383 -6.298 12.519 1 52.36 ? C22 3KZ 701 A 1 HETATM 17 C C21 3KZ . . . B 2 27.998 -6.196 11.914 1 51.75 ? C21 3KZ 701 A 1 HETATM 18 C C19 3KZ . . . B 2 29.039 -5.649 9.67 1 52.41 ? C19 3KZ 701 A 1 HETATM 19 C C12 3KZ . . . B 2 30.392 -6.744 11.461 1 51.37 ? C12 3KZ 701 A 1 HETATM 20 C C13 3KZ . . . B 2 34.185 -4.47 14.265 1 55.5 ? C13 3KZ 701 A 1 HETATM 21 C C18 3KZ . . . B 2 30.447 -5.872 10.212 1 51.64 ? C18 3KZ 701 A 1 HETATM 22 C C17 3KZ . . . B 2 35.029 -4.07 13.071 1 57 ? C17 3KZ 701 A 1 HETATM 23 C C23 3KZ . . . B 2 31.245 -4.574 10.329 1 49.04 ? C23 3KZ 701 A 1 HETATM 24 C C31 3KZ . . . B 2 26.726 -5.032 10.186 1 51.28 ? C31 3KZ 701 A 1 HETATM 25 N N16 3KZ . . . B 2 35.642 -4.453 16.268 1 53.55 ? N16 3KZ 701 A 1 HETATM 26 N N10 3KZ . . . B 2 34.153 -5.936 14.458 1 55.41 ? N10 3KZ 701 A 1 HETATM 27 N N11 3KZ . . . B 2 35.824 -5.887 16.088 1 56.71 ? N11 3KZ 701 A 1 HETATM 28 N N20 3KZ . . . B 2 28.075 -5.261 10.753 1 51.74 ? N20 3KZ 701 A 1 HETATM 29 O O15 3KZ . . . B 2 34.376 -2.627 15.718 1 55.79 ? O15 3KZ 701 A 1 HETATM 30 O O7 3KZ . . . B 2 35.381 -8.269 13.629 1 57.5 ? O7 3KZ 701 A 1 HETATM 31 F F30 3KZ . . . B 2 33.21 -8.309 8.906 1 52.69 ? F30 3KZ 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #