data_4RA5 # _model_server_result.job_id EQ_2-A7tSl-RutD8rLAPdQ _model_server_result.datetime_utc '2024-12-28 02:55:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ra5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 4RA5 # _exptl.entry_id 4RA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R)-9-[(1,3-dimethylazetidin-3-yl)(methyl)amino]-1-methyl-8-phenyl-3,5-dihydro[1,2,4]triazino[3,4-c][1,4]benzoxazin-2(1H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RA5 _cell.length_a 74.822 _cell.length_b 77.026 _cell.length_c 147.547 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 302 A LEU 675 1_555 A N SEP 303 A SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SEP 303 A SEP 676 1_555 A N PHE 304 A PHE 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PHE 321 A PHE 694 1_555 A N SEP 322 A SEP 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C SEP 322 A SEP 695 1_555 A N PHE 323 A PHE 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C LEU 302 B LEU 675 1_555 B N SEP 303 B SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C PHE 321 B PHE 694 1_555 B N SEP 322 B SEP 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 B C SEP 322 B SEP 695 1_555 B N PHE 323 B PHE 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD2 ASP 221 A ASP 594 1_555 D NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc2 D NA NA . A NA 802 1_555 H O HOH . A HOH 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc3 D NA NA . A NA 802 1_555 H O HOH . A HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'C23 H27 N5 O2' _chem_comp.formula_weight 405.493 _chem_comp.id 3L0 _chem_comp.mon_nstd_flag . _chem_comp.name (1R)-9-[(1,3-dimethylazetidin-3-yl)(methyl)amino]-1-methyl-8-phenyl-3,5-dihydro[1,2,4]triazino[3,4-c][1,4]benzoxazin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (6-[(1,3-Dimethyl-azetidin-3-yl)-methyl-amino]-4(R)-methyl-7-phenyl-2,10-dihydro-9-oxa-1,2,4a-triaza-phenanthren-3-one) # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N18 N19 3L0 sing 1 n n N18 C16 3L0 sing 2 n n N19 C20 3L0 doub 3 n n O17 C16 3L0 doub 4 n n C16 C13 3L0 sing 5 n n C20 C21 3L0 sing 6 n n C20 N12 3L0 sing 7 n n C21 O22 3L0 sing 8 n n N12 C13 3L0 sing 9 n n N12 C11 3L0 sing 10 n n C13 C15 3L0 sing 11 n n O22 C23 3L0 sing 12 n n C11 C23 3L0 doub 13 n y C11 C10 3L0 sing 14 n y C23 C24 3L0 sing 15 n y C10 C9 3L0 doub 16 n y C24 C25 3L0 doub 17 n y C5 C4 3L0 sing 18 n n C9 C25 3L0 sing 19 n y C9 N7 3L0 sing 20 n n C6 C4 3L0 sing 21 n n C6 N2 3L0 sing 22 n n C25 C26 3L0 sing 23 n n C4 N7 3L0 sing 24 n n C4 C3 3L0 sing 25 n n N7 C8 3L0 sing 26 n n N2 C3 3L0 sing 27 n n N2 C1 3L0 sing 28 n n C27 C26 3L0 doub 29 n y C27 C28 3L0 sing 30 n y C26 C31 3L0 sing 31 n y C28 C29 3L0 doub 32 n y C31 C30 3L0 doub 33 n y C29 C30 3L0 sing 34 n y C1 H1 3L0 sing 35 n n C1 H2 3L0 sing 36 n n C1 H3 3L0 sing 37 n n C3 H5 3L0 sing 38 n n C3 H6 3L0 sing 39 n n C5 H7 3L0 sing 40 n n C5 H8 3L0 sing 41 n n C5 H9 3L0 sing 42 n n C6 H10 3L0 sing 43 n n C6 H11 3L0 sing 44 n n C8 H12 3L0 sing 45 n n C8 H13 3L0 sing 46 n n C8 H14 3L0 sing 47 n n C10 H15 3L0 sing 48 n n C13 H16 3L0 sing 49 n n C15 H17 3L0 sing 50 n n C15 H18 3L0 sing 51 n n C15 H19 3L0 sing 52 n n N18 H20 3L0 sing 53 n n C21 H21 3L0 sing 54 n n C21 H22 3L0 sing 55 n n C24 H23 3L0 sing 56 n n C27 H24 3L0 sing 57 n n C28 H25 3L0 sing 58 n n C29 H26 3L0 sing 59 n n C30 H27 3L0 sing 60 n n C31 H28 3L0 sing 61 n n # _atom_sites.entry_id 4RA5 _atom_sites.fract_transf_matrix[1][1] 0.013365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3L0 A 1 801 1 3L0 INX . D 3 NA A 1 802 1 NA NA . E 4 EDO A 1 803 2 EDO EDO . F 4 EDO A 1 804 3 EDO EDO . G 2 3L0 B 1 801 2 3L0 INX . H 5 HOH A 1 901 1 HOH HOH . H 5 HOH A 2 902 2 HOH HOH . H 5 HOH A 3 903 3 HOH HOH . H 5 HOH A 4 904 5 HOH HOH . H 5 HOH A 5 905 7 HOH HOH . H 5 HOH A 6 906 8 HOH HOH . H 5 HOH A 7 907 9 HOH HOH . H 5 HOH A 8 908 10 HOH HOH . H 5 HOH A 9 909 11 HOH HOH . H 5 HOH A 10 910 12 HOH HOH . H 5 HOH A 11 911 13 HOH HOH . H 5 HOH A 12 912 15 HOH HOH . H 5 HOH A 13 913 16 HOH HOH . H 5 HOH A 14 914 17 HOH HOH . H 5 HOH A 15 915 18 HOH HOH . H 5 HOH A 16 916 19 HOH HOH . H 5 HOH A 17 917 20 HOH HOH . H 5 HOH A 18 918 21 HOH HOH . H 5 HOH A 19 919 22 HOH HOH . H 5 HOH A 20 920 23 HOH HOH . H 5 HOH A 21 921 24 HOH HOH . I 5 HOH B 1 901 4 HOH HOH . I 5 HOH B 2 902 6 HOH HOH . I 5 HOH B 3 903 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3L0 . . . G 2 -20.222 3.334 9.684 1 76.74 ? C1 3L0 801 B 1 HETATM 2 N N2 3L0 . . . G 2 -21.668 3.194 9.432 1 77.42 ? N2 3L0 801 B 1 HETATM 3 C C3 3L0 . . . G 2 -22.296 2.175 10.291 1 78.49 ? C3 3L0 801 B 1 HETATM 4 C C4 3L0 . . . G 2 -22.977 1.549 9.058 1 78.23 ? C4 3L0 801 B 1 HETATM 5 C C5 3L0 . . . G 2 -24.438 1.984 8.851 1 78.3 ? C5 3L0 801 B 1 HETATM 6 C C6 3L0 . . . G 2 -21.951 2.368 8.242 1 77.74 ? C6 3L0 801 B 1 HETATM 7 N N7 3L0 . . . G 2 -22.871 0.077 9.012 1 76.43 ? N7 3L0 801 B 1 HETATM 8 C C8 3L0 . . . G 2 -23.323 -0.709 10.17 1 77.72 ? C8 3L0 801 B 1 HETATM 9 C C9 3L0 . . . G 2 -22.443 -0.599 7.862 1 75.84 ? C9 3L0 801 B 1 HETATM 10 C C10 3L0 . . . G 2 -23.45 -0.929 6.966 1 75.13 ? C10 3L0 801 B 1 HETATM 11 C C11 3L0 . . . G 2 -23.179 -1.611 5.776 1 75.6 ? C11 3L0 801 B 1 HETATM 12 N N12 3L0 . . . G 2 -24.185 -1.97 4.842 1 75.93 ? N12 3L0 801 B 1 HETATM 13 C C13 3L0 . . . G 2 -25.614 -2.132 5.237 1 74.15 ? C13 3L0 801 B 1 HETATM 14 C C15 3L0 . . . G 2 -25.813 -3.451 5.994 1 73.61 ? C15 3L0 801 B 1 HETATM 15 C C16 3L0 . . . G 2 -26.541 -2.08 4.041 1 74.28 ? C16 3L0 801 B 1 HETATM 16 O O17 3L0 . . . G 2 -27.737 -1.953 4.206 1 73.45 ? O17 3L0 801 B 1 HETATM 17 N N18 3L0 . . . G 2 -26.037 -2.166 2.796 1 74.53 ? N18 3L0 801 B 1 HETATM 18 N N19 3L0 . . . G 2 -24.663 -2.307 2.57 1 75.31 ? N19 3L0 801 B 1 HETATM 19 C C20 3L0 . . . G 2 -23.793 -2.214 3.521 1 73.53 ? C20 3L0 801 B 1 HETATM 20 C C21 3L0 . . . G 2 -22.327 -2.374 3.184 1 71.67 ? C21 3L0 801 B 1 HETATM 21 O O22 3L0 . . . G 2 -21.548 -2.619 4.346 1 74.55 ? O22 3L0 801 B 1 HETATM 22 C C23 3L0 . . . G 2 -21.844 -1.963 5.493 1 75.01 ? C23 3L0 801 B 1 HETATM 23 C C24 3L0 . . . G 2 -20.823 -1.644 6.383 1 75.22 ? C24 3L0 801 B 1 HETATM 24 C C25 3L0 . . . G 2 -21.102 -0.963 7.577 1 77.42 ? C25 3L0 801 B 1 HETATM 25 C C26 3L0 . . . G 2 -19.966 -0.653 8.48 1 77.16 ? C26 3L0 801 B 1 HETATM 26 C C27 3L0 . . . G 2 -18.874 0.09 8.005 1 80.33 ? C27 3L0 801 B 1 HETATM 27 C C28 3L0 . . . G 2 -17.807 0.374 8.846 1 80.31 ? C28 3L0 801 B 1 HETATM 28 C C29 3L0 . . . G 2 -17.811 -0.086 10.158 1 80.83 ? C29 3L0 801 B 1 HETATM 29 C C30 3L0 . . . G 2 -18.885 -0.831 10.635 1 79.76 ? C30 3L0 801 B 1 HETATM 30 C C31 3L0 . . . G 2 -19.957 -1.119 9.802 1 78.65 ? C31 3L0 801 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #