data_4RA5 # _model_server_result.job_id nKs0jJ_SIGB3arN1aWdaag _model_server_result.datetime_utc '2024-12-28 03:06:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ra5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 4RA5 # _exptl.entry_id 4RA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RA5 _cell.length_a 74.822 _cell.length_b 77.026 _cell.length_c 147.547 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 302 A LEU 675 1_555 A N SEP 303 A SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SEP 303 A SEP 676 1_555 A N PHE 304 A PHE 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PHE 321 A PHE 694 1_555 A N SEP 322 A SEP 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C SEP 322 A SEP 695 1_555 A N PHE 323 A PHE 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C LEU 302 B LEU 675 1_555 B N SEP 303 B SEP 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C PHE 321 B PHE 694 1_555 B N SEP 322 B SEP 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 B C SEP 322 B SEP 695 1_555 B N PHE 323 B PHE 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD2 ASP 221 A ASP 594 1_555 D NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc2 D NA NA . A NA 802 1_555 H O HOH . A HOH 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc3 D NA NA . A NA 802 1_555 H O HOH . A HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RA5 _atom_sites.fract_transf_matrix[1][1] 0.013365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006778 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3L0 A 1 801 1 3L0 INX . D 3 NA A 1 802 1 NA NA . E 4 EDO A 1 803 2 EDO EDO . F 4 EDO A 1 804 3 EDO EDO . G 2 3L0 B 1 801 2 3L0 INX . H 5 HOH A 1 901 1 HOH HOH . H 5 HOH A 2 902 2 HOH HOH . H 5 HOH A 3 903 3 HOH HOH . H 5 HOH A 4 904 5 HOH HOH . H 5 HOH A 5 905 7 HOH HOH . H 5 HOH A 6 906 8 HOH HOH . H 5 HOH A 7 907 9 HOH HOH . H 5 HOH A 8 908 10 HOH HOH . H 5 HOH A 9 909 11 HOH HOH . H 5 HOH A 10 910 12 HOH HOH . H 5 HOH A 11 911 13 HOH HOH . H 5 HOH A 12 912 15 HOH HOH . H 5 HOH A 13 913 16 HOH HOH . H 5 HOH A 14 914 17 HOH HOH . H 5 HOH A 15 915 18 HOH HOH . H 5 HOH A 16 916 19 HOH HOH . H 5 HOH A 17 917 20 HOH HOH . H 5 HOH A 18 918 21 HOH HOH . H 5 HOH A 19 919 22 HOH HOH . H 5 HOH A 20 920 23 HOH HOH . H 5 HOH A 21 921 24 HOH HOH . I 5 HOH B 1 901 4 HOH HOH . I 5 HOH B 2 902 6 HOH HOH . I 5 HOH B 3 903 14 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -54.614 _atom_site.Cartn_y 9.483 _atom_site.Cartn_z -17.145 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.52 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #