data_4RA6
#
_model_server_result.job_id            nBKMIZY71nVLF8378m-ezw 
_model_server_result.datetime_utc      '2024-11-20 02:26:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ra6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    4RA6 
#
_exptl.entry_id    4RA6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RA6 
_cell.length_a            61.427 
_cell.length_b            61.427 
_cell.length_c            155.934 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RA6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,H,I 1 1 
C,D,G,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 61 A CYS 39 1_555 A SG CYS 64 A CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 C SG CYS 61 P CYS 39 1_555 C SG CYS 64 P CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4RA6 
_atom_sites.fract_transf_matrix[1][1]    0.016279 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006413 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 201 3968 GOL GOL . 
F 3 GOL B 1 401 401 GOL GOL . 
G 3 GOL P 1 201 201 GOL GOL . 
H 4 HOH A 1 301 201 HOH HOH . 
H 4 HOH A 2 302 202 HOH HOH . 
H 4 HOH A 3 303 203 HOH HOH . 
H 4 HOH A 4 304 204 HOH HOH . 
H 4 HOH A 5 305 205 HOH HOH . 
H 4 HOH A 6 306 206 HOH HOH . 
H 4 HOH A 7 307 208 HOH HOH . 
H 4 HOH A 8 308 209 HOH HOH . 
H 4 HOH A 9 309 210 HOH HOH . 
H 4 HOH A 10 310 211 HOH HOH . 
H 4 HOH A 11 311 212 HOH HOH . 
H 4 HOH A 12 312 213 HOH HOH . 
H 4 HOH A 13 313 214 HOH HOH . 
H 4 HOH A 14 314 216 HOH HOH . 
H 4 HOH A 15 315 217 HOH HOH . 
H 4 HOH A 16 316 219 HOH HOH . 
H 4 HOH A 17 317 220 HOH HOH . 
H 4 HOH A 18 318 221 HOH HOH . 
H 4 HOH A 19 319 222 HOH HOH . 
H 4 HOH A 20 320 224 HOH HOH . 
H 4 HOH A 21 321 503 HOH HOH . 
H 4 HOH A 22 322 1 HOH HOH . 
I 4 HOH B 1 501 501 HOH HOH . 
I 4 HOH B 2 502 502 HOH HOH . 
I 4 HOH B 3 503 504 HOH HOH . 
I 4 HOH B 4 504 505 HOH HOH . 
I 4 HOH B 5 505 506 HOH HOH . 
I 4 HOH B 6 506 507 HOH HOH . 
I 4 HOH B 7 507 508 HOH HOH . 
I 4 HOH B 8 508 509 HOH HOH . 
J 4 HOH P 1 301 301 HOH HOH . 
J 4 HOH P 2 302 302 HOH HOH . 
J 4 HOH P 3 303 303 HOH HOH . 
J 4 HOH P 4 304 304 HOH HOH . 
J 4 HOH P 5 305 305 HOH HOH . 
J 4 HOH P 6 306 306 HOH HOH . 
J 4 HOH P 7 307 307 HOH HOH . 
J 4 HOH P 8 308 308 HOH HOH . 
J 4 HOH P 9 309 309 HOH HOH . 
J 4 HOH P 10 310 310 HOH HOH . 
J 4 HOH P 11 311 312 HOH HOH . 
J 4 HOH P 12 312 313 HOH HOH . 
J 4 HOH P 13 313 314 HOH HOH . 
J 4 HOH P 14 314 315 HOH HOH . 
J 4 HOH P 15 315 316 HOH HOH . 
J 4 HOH P 16 316 318 HOH HOH . 
J 4 HOH P 17 317 319 HOH HOH . 
J 4 HOH P 18 318 320 HOH HOH . 
J 4 HOH P 19 319 322 HOH HOH . 
K 4 HOH Q 1 401 401 HOH HOH . 
K 4 HOH Q 2 402 402 HOH HOH . 
K 4 HOH Q 3 403 403 HOH HOH . 
K 4 HOH Q 4 404 404 HOH HOH . 
K 4 HOH Q 5 405 405 HOH HOH . 
K 4 HOH Q 6 406 406 HOH HOH . 
K 4 HOH Q 7 407 407 HOH HOH . 
K 4 HOH Q 8 408 408 HOH HOH . 
K 4 HOH Q 9 409 409 HOH HOH . 
K 4 HOH Q 10 410 410 HOH HOH . 
K 4 HOH Q 11 411 412 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -56.222 25.277 14.487 1 59.81 ? C1 GOL 201 P 1 
HETATM 2 O O1 GOL . . . G 3 -57.623 25.181 14.337 1 52.95 ? O1 GOL 201 P 1 
HETATM 3 C C2 GOL . . . G 3 -55.652 25.895 13.218 1 60.1 ? C2 GOL 201 P 1 
HETATM 4 O O2 GOL . . . G 3 -56.711 26.145 12.319 1 63.69 ? O2 GOL 201 P 1 
HETATM 5 C C3 GOL . . . G 3 -54.933 27.198 13.546 1 53.15 ? C3 GOL 201 P 1 
HETATM 6 O O3 GOL . . . G 3 -54.39 27.711 12.354 1 52.02 ? O3 GOL 201 P 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#