data_4RA9 # _model_server_result.job_id NJtgtZ64rb3TYfsFVKRlHg _model_server_result.datetime_utc '2024-11-20 02:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ra9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 4RA9 # _exptl.entry_id 4RA9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RA9 _cell.length_a 90.679 _cell.length_b 90.679 _cell.length_c 189.955 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RA9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 61 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 39 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 64 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 42 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 4RA9 _atom_sites.fract_transf_matrix[1][1] 0.011028 _atom_sites.fract_transf_matrix[1][2] 0.006367 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FLC A 1 201 201 FLC FLC . D 4 GOL A 1 202 202 GOL GOL . E 4 GOL A 1 203 203 GOL GOL . F 4 GOL A 1 204 204 GOL GOL . G 4 GOL A 1 205 205 GOL GOL . H 5 IPA A 1 206 206 IPA IPA . I 3 FLC B 1 401 401 FLC FLC . J 5 IPA B 1 402 402 IPA IPA . K 6 HOH A 1 301 301 HOH HOH . K 6 HOH A 2 302 302 HOH HOH . K 6 HOH A 3 303 303 HOH HOH . K 6 HOH A 4 304 304 HOH HOH . K 6 HOH A 5 305 305 HOH HOH . K 6 HOH A 6 306 306 HOH HOH . K 6 HOH A 7 307 307 HOH HOH . K 6 HOH A 8 308 308 HOH HOH . K 6 HOH A 9 309 309 HOH HOH . K 6 HOH A 10 310 310 HOH HOH . K 6 HOH A 11 311 311 HOH HOH . K 6 HOH A 12 312 312 HOH HOH . K 6 HOH A 13 313 313 HOH HOH . K 6 HOH A 14 314 314 HOH HOH . K 6 HOH A 15 315 315 HOH HOH . K 6 HOH A 16 316 316 HOH HOH . K 6 HOH A 17 317 317 HOH HOH . K 6 HOH A 18 318 318 HOH HOH . K 6 HOH A 19 319 319 HOH HOH . K 6 HOH A 20 320 320 HOH HOH . K 6 HOH A 21 321 321 HOH HOH . K 6 HOH A 22 322 322 HOH HOH . K 6 HOH A 23 323 323 HOH HOH . K 6 HOH A 24 324 324 HOH HOH . K 6 HOH A 25 325 325 HOH HOH . K 6 HOH A 26 326 326 HOH HOH . K 6 HOH A 27 327 327 HOH HOH . K 6 HOH A 28 328 328 HOH HOH . K 6 HOH A 29 329 329 HOH HOH . K 6 HOH A 30 330 330 HOH HOH . K 6 HOH A 31 331 331 HOH HOH . K 6 HOH A 32 332 332 HOH HOH . K 6 HOH A 33 333 333 HOH HOH . K 6 HOH A 34 334 334 HOH HOH . K 6 HOH A 35 335 335 HOH HOH . K 6 HOH A 36 336 336 HOH HOH . K 6 HOH A 37 337 337 HOH HOH . K 6 HOH A 38 338 338 HOH HOH . K 6 HOH A 39 339 339 HOH HOH . K 6 HOH A 40 340 340 HOH HOH . K 6 HOH A 41 341 341 HOH HOH . K 6 HOH A 42 342 342 HOH HOH . K 6 HOH A 43 343 343 HOH HOH . K 6 HOH A 44 344 344 HOH HOH . K 6 HOH A 45 345 345 HOH HOH . K 6 HOH A 46 346 346 HOH HOH . K 6 HOH A 47 347 347 HOH HOH . K 6 HOH A 48 348 348 HOH HOH . K 6 HOH A 49 349 349 HOH HOH . K 6 HOH A 50 350 350 HOH HOH . K 6 HOH A 51 351 351 HOH HOH . K 6 HOH A 52 352 352 HOH HOH . K 6 HOH A 53 353 353 HOH HOH . K 6 HOH A 54 354 354 HOH HOH . K 6 HOH A 55 355 355 HOH HOH . K 6 HOH A 56 356 356 HOH HOH . K 6 HOH A 57 357 357 HOH HOH . K 6 HOH A 58 358 358 HOH HOH . K 6 HOH A 59 359 359 HOH HOH . K 6 HOH A 60 360 360 HOH HOH . K 6 HOH A 61 361 361 HOH HOH . K 6 HOH A 62 362 362 HOH HOH . K 6 HOH A 63 363 363 HOH HOH . K 6 HOH A 64 364 365 HOH HOH . K 6 HOH A 65 365 366 HOH HOH . K 6 HOH A 66 366 367 HOH HOH . K 6 HOH A 67 367 368 HOH HOH . K 6 HOH A 68 368 369 HOH HOH . K 6 HOH A 69 369 370 HOH HOH . K 6 HOH A 70 370 371 HOH HOH . K 6 HOH A 71 371 372 HOH HOH . K 6 HOH A 72 372 373 HOH HOH . K 6 HOH A 73 373 374 HOH HOH . K 6 HOH A 74 374 375 HOH HOH . K 6 HOH A 75 375 376 HOH HOH . K 6 HOH A 76 376 377 HOH HOH . K 6 HOH A 77 377 378 HOH HOH . K 6 HOH A 78 378 379 HOH HOH . K 6 HOH A 79 379 380 HOH HOH . K 6 HOH A 80 380 381 HOH HOH . L 6 HOH B 1 501 364 HOH HOH . L 6 HOH B 2 502 501 HOH HOH . L 6 HOH B 3 503 502 HOH HOH . L 6 HOH B 4 504 503 HOH HOH . L 6 HOH B 5 505 504 HOH HOH . L 6 HOH B 6 506 505 HOH HOH . L 6 HOH B 7 507 506 HOH HOH . L 6 HOH B 8 508 507 HOH HOH . L 6 HOH B 9 509 508 HOH HOH . L 6 HOH B 10 510 509 HOH HOH . L 6 HOH B 11 511 510 HOH HOH . L 6 HOH B 12 512 511 HOH HOH . L 6 HOH B 13 513 512 HOH HOH . L 6 HOH B 14 514 513 HOH HOH . L 6 HOH B 15 515 514 HOH HOH . L 6 HOH B 16 516 515 HOH HOH . L 6 HOH B 17 517 516 HOH HOH . L 6 HOH B 18 518 517 HOH HOH . L 6 HOH B 19 519 518 HOH HOH . L 6 HOH B 20 520 519 HOH HOH . L 6 HOH B 21 521 520 HOH HOH . L 6 HOH B 22 522 521 HOH HOH . L 6 HOH B 23 523 522 HOH HOH . L 6 HOH B 24 524 523 HOH HOH . L 6 HOH B 25 525 524 HOH HOH . L 6 HOH B 26 526 525 HOH HOH . L 6 HOH B 27 527 526 HOH HOH . L 6 HOH B 28 528 527 HOH HOH . L 6 HOH B 29 529 528 HOH HOH . L 6 HOH B 30 530 529 HOH HOH . L 6 HOH B 31 531 530 HOH HOH . L 6 HOH B 32 532 531 HOH HOH . L 6 HOH B 33 533 532 HOH HOH . L 6 HOH B 34 534 533 HOH HOH . L 6 HOH B 35 535 534 HOH HOH . L 6 HOH B 36 536 535 HOH HOH . L 6 HOH B 37 537 536 HOH HOH . L 6 HOH B 38 538 537 HOH HOH . L 6 HOH B 39 539 538 HOH HOH . L 6 HOH B 40 540 539 HOH HOH . L 6 HOH B 41 541 540 HOH HOH . L 6 HOH B 42 542 541 HOH HOH . L 6 HOH B 43 543 542 HOH HOH . L 6 HOH B 44 544 543 HOH HOH . L 6 HOH B 45 545 544 HOH HOH . L 6 HOH B 46 546 545 HOH HOH . L 6 HOH B 47 547 546 HOH HOH . L 6 HOH B 48 548 547 HOH HOH . L 6 HOH B 49 549 548 HOH HOH . L 6 HOH B 50 550 549 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 34.369 -28.073 4.181 0.7 35.88 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . F 4 33.236 -27.255 4.039 0.7 48.34 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . F 4 34.346 -29.112 3.069 0.7 42.64 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . F 4 33.475 -28.704 2.032 0.7 58.05 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . F 4 35.746 -29.311 2.511 0.7 33.68 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . F 4 36.404 -30.279 3.275 0.7 34.56 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #