data_4RAB # _model_server_result.job_id 7_ixpAIdjLiVmZVmzIa7NA _model_server_result.datetime_utc '2024-12-22 03:17:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rab # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":304}' # _entry.id 4RAB # _exptl.entry_id 4RAB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.04 _cell.angle_gamma 90 _cell.entry_id 4RAB _cell.length_a 55.728 _cell.length_b 128.958 _cell.length_c 62.938 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RAB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 N N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 133 A GLU 133 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc2 A OE1 GLU 133 A GLU 133 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 A OD1 ASP 134 A ASP 134 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 A O ILE 135 A ILE 135 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc5 F MG MG . A MG 302 1_555 S O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc6 B OE1 GLU 133 B GLU 133 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc7 B OE2 GLU 133 B GLU 133 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc8 B OD1 ASP 134 B ASP 134 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc9 C OE1 GLU 133 C GLU 133 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc10 C OD1 ASP 134 C ASP 134 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc11 C OD1 ASP 193 C ASP 193 1_555 M MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc12 K OAH 3L3 . C 3L3 301 1_555 M MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc13 L MG MG . C MG 302 1_555 U O HOH . C HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc14 L MG MG . C MG 302 1_555 U O HOH . C HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc15 L MG MG . C MG 302 1_555 U O HOH . C HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc16 M MG MG . C MG 303 1_555 N O3 PO4 . C PO4 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc17 M MG MG . C MG 303 1_555 U O HOH . C HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc18 D OE1 GLU 133 D GLU 133 1_555 P MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc19 D OD1 ASP 134 D ASP 134 1_555 P MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc20 D OD1 ASP 193 D ASP 193 1_555 Q MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc21 P MG MG . D MG 302 1_555 V O HOH . D HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc22 P MG MG . D MG 302 1_555 V O HOH . D HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc23 P MG MG . D MG 302 1_555 V O HOH . D HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 310 n n P O2 PO4 sing 311 n n P O3 PO4 sing 312 n n P O4 PO4 sing 313 n n # _atom_sites.entry_id 4RAB _atom_sites.fract_transf_matrix[1][1] 0.017944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004157 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3L3 A 1 301 1 3L3 DRG . F 3 MG A 1 302 2 MG MG . G 4 PO4 A 1 303 3 PO4 PO4 . H 2 3L3 B 1 301 1 3L3 DRG . I 3 MG B 1 302 6 MG MG . J 4 PO4 B 1 304 1 PO4 PO4 . K 2 3L3 C 1 301 1 3L3 DRG . L 3 MG C 1 302 1 MG MG . M 3 MG C 1 303 4 MG MG . N 4 PO4 C 1 304 4 PO4 PO4 . O 2 3L3 D 1 301 1 3L3 DRG . P 3 MG D 1 302 3 MG MG . Q 3 MG D 1 303 5 MG MG . R 4 PO4 D 1 304 2 PO4 PO4 . S 5 HOH A 1 401 6 HOH HOH . S 5 HOH A 2 402 7 HOH HOH . S 5 HOH A 3 403 14 HOH HOH . S 5 HOH A 4 404 16 HOH HOH . S 5 HOH A 5 405 19 HOH HOH . S 5 HOH A 6 406 24 HOH HOH . S 5 HOH A 7 407 25 HOH HOH . S 5 HOH A 8 408 27 HOH HOH . S 5 HOH A 9 409 31 HOH HOH . S 5 HOH A 10 410 32 HOH HOH . S 5 HOH A 11 411 34 HOH HOH . S 5 HOH A 12 412 37 HOH HOH . S 5 HOH A 13 413 42 HOH HOH . S 5 HOH A 14 414 45 HOH HOH . S 5 HOH A 15 415 50 HOH HOH . S 5 HOH A 16 416 56 HOH HOH . S 5 HOH A 17 417 57 HOH HOH . S 5 HOH A 18 418 59 HOH HOH . S 5 HOH A 19 419 64 HOH HOH . S 5 HOH A 20 420 65 HOH HOH . S 5 HOH A 21 421 66 HOH HOH . S 5 HOH A 22 422 68 HOH HOH . S 5 HOH A 23 423 72 HOH HOH . S 5 HOH A 24 424 73 HOH HOH . S 5 HOH A 25 425 82 HOH HOH . S 5 HOH A 26 426 83 HOH HOH . S 5 HOH A 27 427 88 HOH HOH . S 5 HOH A 28 428 94 HOH HOH . S 5 HOH A 29 429 97 HOH HOH . S 5 HOH A 30 430 98 HOH HOH . S 5 HOH A 31 431 99 HOH HOH . S 5 HOH A 32 432 102 HOH HOH . S 5 HOH A 33 433 103 HOH HOH . S 5 HOH A 34 434 106 HOH HOH . S 5 HOH A 35 435 112 HOH HOH . S 5 HOH A 36 436 114 HOH HOH . S 5 HOH A 37 437 115 HOH HOH . S 5 HOH A 38 438 117 HOH HOH . S 5 HOH A 39 439 119 HOH HOH . S 5 HOH A 40 440 120 HOH HOH . S 5 HOH A 41 441 122 HOH HOH . S 5 HOH A 42 442 124 HOH HOH . S 5 HOH A 43 443 125 HOH HOH . S 5 HOH A 44 444 126 HOH HOH . S 5 HOH A 45 445 128 HOH HOH . S 5 HOH A 46 446 129 HOH HOH . S 5 HOH A 47 447 130 HOH HOH . S 5 HOH A 48 448 134 HOH HOH . S 5 HOH A 49 449 139 HOH HOH . S 5 HOH A 50 450 143 HOH HOH . S 5 HOH A 51 451 144 HOH HOH . T 5 HOH B 1 401 23 HOH HOH . T 5 HOH B 2 402 38 HOH HOH . T 5 HOH B 3 403 39 HOH HOH . T 5 HOH B 4 404 44 HOH HOH . T 5 HOH B 5 405 49 HOH HOH . T 5 HOH B 6 406 52 HOH HOH . T 5 HOH B 7 407 53 HOH HOH . T 5 HOH B 8 408 55 HOH HOH . T 5 HOH B 9 409 61 HOH HOH . T 5 HOH B 10 410 63 HOH HOH . T 5 HOH B 11 411 71 HOH HOH . T 5 HOH B 12 412 75 HOH HOH . T 5 HOH B 13 413 79 HOH HOH . T 5 HOH B 14 414 80 HOH HOH . T 5 HOH B 15 415 85 HOH HOH . T 5 HOH B 16 416 95 HOH HOH . T 5 HOH B 17 417 104 HOH HOH . T 5 HOH B 18 418 110 HOH HOH . T 5 HOH B 19 419 131 HOH HOH . T 5 HOH B 20 420 137 HOH HOH . T 5 HOH B 21 421 141 HOH HOH . T 5 HOH B 22 422 151 HOH HOH . U 5 HOH C 1 401 2 HOH HOH . U 5 HOH C 2 402 8 HOH HOH . U 5 HOH C 3 403 9 HOH HOH . U 5 HOH C 4 404 17 HOH HOH . U 5 HOH C 5 405 18 HOH HOH . U 5 HOH C 6 406 26 HOH HOH . U 5 HOH C 7 407 29 HOH HOH . U 5 HOH C 8 408 30 HOH HOH . U 5 HOH C 9 409 33 HOH HOH . U 5 HOH C 10 410 35 HOH HOH . U 5 HOH C 11 411 40 HOH HOH . U 5 HOH C 12 412 41 HOH HOH . U 5 HOH C 13 413 48 HOH HOH . U 5 HOH C 14 414 62 HOH HOH . U 5 HOH C 15 415 69 HOH HOH . U 5 HOH C 16 416 78 HOH HOH . U 5 HOH C 17 417 81 HOH HOH . U 5 HOH C 18 418 87 HOH HOH . U 5 HOH C 19 419 91 HOH HOH . U 5 HOH C 20 420 92 HOH HOH . U 5 HOH C 21 421 100 HOH HOH . U 5 HOH C 22 422 101 HOH HOH . U 5 HOH C 23 423 107 HOH HOH . U 5 HOH C 24 424 113 HOH HOH . U 5 HOH C 25 425 121 HOH HOH . U 5 HOH C 26 426 127 HOH HOH . U 5 HOH C 27 427 136 HOH HOH . U 5 HOH C 28 428 142 HOH HOH . U 5 HOH C 29 429 148 HOH HOH . U 5 HOH C 30 430 150 HOH HOH . U 5 HOH C 31 431 152 HOH HOH . V 5 HOH D 1 401 1 HOH HOH . V 5 HOH D 2 402 3 HOH HOH . V 5 HOH D 3 403 4 HOH HOH . V 5 HOH D 4 404 5 HOH HOH . V 5 HOH D 5 405 10 HOH HOH . V 5 HOH D 6 406 11 HOH HOH . V 5 HOH D 7 407 12 HOH HOH . V 5 HOH D 8 408 13 HOH HOH . V 5 HOH D 9 409 15 HOH HOH . V 5 HOH D 10 410 20 HOH HOH . V 5 HOH D 11 411 21 HOH HOH . V 5 HOH D 12 412 22 HOH HOH . V 5 HOH D 13 413 28 HOH HOH . V 5 HOH D 14 414 36 HOH HOH . V 5 HOH D 15 415 43 HOH HOH . V 5 HOH D 16 416 46 HOH HOH . V 5 HOH D 17 417 47 HOH HOH . V 5 HOH D 18 418 51 HOH HOH . V 5 HOH D 19 419 54 HOH HOH . V 5 HOH D 20 420 58 HOH HOH . V 5 HOH D 21 421 60 HOH HOH . V 5 HOH D 22 422 67 HOH HOH . V 5 HOH D 23 423 70 HOH HOH . V 5 HOH D 24 424 74 HOH HOH . V 5 HOH D 25 425 76 HOH HOH . V 5 HOH D 26 426 77 HOH HOH . V 5 HOH D 27 427 84 HOH HOH . V 5 HOH D 28 428 86 HOH HOH . V 5 HOH D 29 429 89 HOH HOH . V 5 HOH D 30 430 90 HOH HOH . V 5 HOH D 31 431 93 HOH HOH . V 5 HOH D 32 432 96 HOH HOH . V 5 HOH D 33 433 105 HOH HOH . V 5 HOH D 34 434 108 HOH HOH . V 5 HOH D 35 435 109 HOH HOH . V 5 HOH D 36 436 111 HOH HOH . V 5 HOH D 37 437 116 HOH HOH . V 5 HOH D 38 438 118 HOH HOH . V 5 HOH D 39 439 123 HOH HOH . V 5 HOH D 40 440 132 HOH HOH . V 5 HOH D 41 441 133 HOH HOH . V 5 HOH D 42 442 135 HOH HOH . V 5 HOH D 43 443 138 HOH HOH . V 5 HOH D 44 444 140 HOH HOH . V 5 HOH D 45 445 145 HOH HOH . V 5 HOH D 46 446 146 HOH HOH . V 5 HOH D 47 447 147 HOH HOH . V 5 HOH D 48 448 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . N 4 27.345 15.303 31.345 1 92.9 ? P PO4 304 C 1 HETATM 2 O O1 PO4 . . . N 4 27.357 16.497 30.42 1 92.16 ? O1 PO4 304 C 1 HETATM 3 O O2 PO4 . . . N 4 26.002 14.619 31.27 1 92.72 ? O2 PO4 304 C 1 HETATM 4 O O3 PO4 . . . N 4 28.419 14.334 30.917 1 93.19 ? O3 PO4 304 C 1 HETATM 5 O O4 PO4 . . . N 4 27.599 15.753 32.765 1 92.95 ? O4 PO4 304 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #