data_4RAN # _model_server_result.job_id 49JFhs_DiS3wuVyGQCC7iA _model_server_result.datetime_utc '2024-10-18 15:29:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ran # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 4RAN # _exptl.entry_id 4RAN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 359.321 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2-{[2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)ethyl](3-aminopropyl)amino}ethyl)phosphonic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RAN _cell.length_a 66.09 _cell.length_b 95.367 _cell.length_c 139.742 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 133 A GLU 133 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A OE2 GLU 133 A GLU 133 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc3 A OD1 ASP 134 A ASP 134 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc4 F MG MG . A MG 302 1_555 M O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 F MG MG . A MG 302 1_555 M O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc6 F MG MG . A MG 302 1_555 M O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc7 B OE1 GLU 133 B GLU 133 1_555 H MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc8 B OD1 ASP 134 B ASP 134 1_555 H MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc9 H MG MG . B MG 302 1_555 N O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc10 H MG MG . B MG 302 1_555 N O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc11 C OE2 GLU 133 C GLU 133 1_555 J MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc12 C OE1 GLU 133 C GLU 133 1_555 J MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc13 C OD1 ASP 134 C ASP 134 1_555 J MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc14 J MG MG . C MG 302 1_555 O O HOH . C HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc15 D OE2 GLU 133 D GLU 133 1_555 L MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc16 D OE1 GLU 133 D GLU 133 1_555 L MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc17 D OD1 ASP 134 D ASP 134 1_555 L MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'C12 H22 N7 O4 P' _chem_comp.formula_weight 359.321 _chem_comp.id 3L6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2-{[2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)ethyl](3-aminopropyl)amino}ethyl)phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 3L6 doub 1 n n C6 N1 3L6 sing 2 n n C6 C5 3L6 sing 3 n n N1 C2 3L6 sing 4 n n N2 C2 3L6 sing 5 n n C2 N3 3L6 doub 6 n n C5 N7 3L6 sing 7 n y C5 C4 3L6 doub 8 n y N7 C8 3L6 doub 9 n y N3 C4 3L6 sing 10 n n C4 N9 3L6 sing 11 n y C8 N9 3L6 sing 12 n y N9 CAM 3L6 sing 13 n n CAM CAK 3L6 sing 14 n n CAK NAV 3L6 sing 15 n n CAN PAX 3L6 sing 16 n n CAN CAL 3L6 sing 17 n n OAD PAX 3L6 doub 18 n n NAV CAL 3L6 sing 19 n n NAV CAJ 3L6 sing 20 n n OAE PAX 3L6 sing 21 n n PAX OAF 3L6 sing 22 n n CAJ CAI 3L6 sing 23 n n CAI CAG 3L6 sing 24 n n CAG NAA 3L6 sing 25 n n NAA H1 3L6 sing 26 n n NAA H2 3L6 sing 27 n n CAG H4 3L6 sing 28 n n CAG H5 3L6 sing 29 n n CAI H6 3L6 sing 30 n n CAI H7 3L6 sing 31 n n CAJ H8 3L6 sing 32 n n CAJ H9 3L6 sing 33 n n CAL H11 3L6 sing 34 n n CAL H12 3L6 sing 35 n n CAN H13 3L6 sing 36 n n CAN H14 3L6 sing 37 n n OAF H15 3L6 sing 38 n n OAE H16 3L6 sing 39 n n CAK H17 3L6 sing 40 n n CAK H18 3L6 sing 41 n n CAM H19 3L6 sing 42 n n CAM H20 3L6 sing 43 n n N2 H21 3L6 sing 44 n n N2 H22 3L6 sing 45 n n N1 H23 3L6 sing 46 n n C8 H24 3L6 sing 47 n n # _atom_sites.entry_id 4RAN _atom_sites.fract_transf_matrix[1][1] 0.015131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3L6 A 1 301 1 3L6 DRG . F 3 MG A 1 302 3 MG MG . G 2 3L6 B 1 301 1 3L6 DRG . H 3 MG B 1 302 4 MG MG . I 2 3L6 C 1 301 1 3L6 DRG . J 3 MG C 1 302 1 MG MG . K 2 3L6 D 1 301 1 3L6 DRG . L 3 MG D 1 302 2 MG MG . M 4 HOH A 1 401 4 HOH HOH . M 4 HOH A 2 402 6 HOH HOH . M 4 HOH A 3 403 7 HOH HOH . M 4 HOH A 4 404 8 HOH HOH . M 4 HOH A 5 405 10 HOH HOH . M 4 HOH A 6 406 11 HOH HOH . M 4 HOH A 7 407 14 HOH HOH . M 4 HOH A 8 408 18 HOH HOH . M 4 HOH A 9 409 21 HOH HOH . M 4 HOH A 10 410 22 HOH HOH . M 4 HOH A 11 411 26 HOH HOH . M 4 HOH A 12 412 27 HOH HOH . N 4 HOH B 1 401 2 HOH HOH . N 4 HOH B 2 402 5 HOH HOH . N 4 HOH B 3 403 12 HOH HOH . N 4 HOH B 4 404 17 HOH HOH . N 4 HOH B 5 405 19 HOH HOH . N 4 HOH B 6 406 25 HOH HOH . O 4 HOH C 1 401 9 HOH HOH . O 4 HOH C 2 402 13 HOH HOH . O 4 HOH C 3 403 20 HOH HOH . O 4 HOH C 4 404 23 HOH HOH . O 4 HOH C 5 405 24 HOH HOH . P 4 HOH D 1 401 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA 3L6 . . . I 2 -35.053 5.735 30.601 1 103.61 ? NAA 3L6 301 C 1 HETATM 2 C CAG 3L6 . . . I 2 -36.254 6.089 30.801 1 104.01 ? CAG 3L6 301 C 1 HETATM 3 C CAI 3L6 . . . I 2 -37.665 6.51 31.023 1 101.43 ? CAI 3L6 301 C 1 HETATM 4 C CAJ 3L6 . . . I 2 -38.463 6.906 29.854 1 99.19 ? CAJ 3L6 301 C 1 HETATM 5 N NAV 3L6 . . . I 2 -38.923 8.256 29.724 1 96.93 ? NAV 3L6 301 C 1 HETATM 6 C CAL 3L6 . . . I 2 -37.762 9.152 29.705 1 98.36 ? CAL 3L6 301 C 1 HETATM 7 C CAN 3L6 . . . I 2 -38.174 10.573 29.23 1 101.27 ? CAN 3L6 301 C 1 HETATM 8 P PAX 3L6 . . . I 2 -37.677 11.855 30.462 1 83.37 ? PAX 3L6 301 C 1 HETATM 9 O OAD 3L6 . . . I 2 -36.615 12.808 29.831 1 75.17 ? OAD 3L6 301 C 1 HETATM 10 O OAF 3L6 . . . I 2 -37.065 11.169 31.765 1 156.82 ? OAF 3L6 301 C 1 HETATM 11 O OAE 3L6 . . . I 2 -38.894 12.645 30.855 1 79.18 ? OAE 3L6 301 C 1 HETATM 12 C CAK 3L6 . . . I 2 -39.656 8.36 28.452 1 93.64 ? CAK 3L6 301 C 1 HETATM 13 C CAM 3L6 . . . I 2 -41.047 7.798 28.629 1 94.44 ? CAM 3L6 301 C 1 HETATM 14 N N9 3L6 . . . I 2 -41.95 8.43 27.689 1 93.83 ? N9 3L6 301 C 1 HETATM 15 C C4 3L6 . . . I 2 -42.534 7.803 26.615 1 91.58 ? C4 3L6 301 C 1 HETATM 16 N N3 3L6 . . . I 2 -42.449 6.552 26.161 1 92.62 ? N3 3L6 301 C 1 HETATM 17 C C2 3L6 . . . I 2 -43.123 6.193 25.082 1 91.07 ? C2 3L6 301 C 1 HETATM 18 N N2 3L6 . . . I 2 -43.035 4.858 24.598 1 96.37 ? N2 3L6 301 C 1 HETATM 19 N N1 3L6 . . . I 2 -43.915 7.1 24.428 1 88.04 ? N1 3L6 301 C 1 HETATM 20 C C6 3L6 . . . I 2 -44.041 8.37 24.833 1 85.86 ? C6 3L6 301 C 1 HETATM 21 O O6 3L6 . . . I 2 -44.859 9.264 24.135 1 76.4 ? O6 3L6 301 C 1 HETATM 22 C C5 3L6 . . . I 2 -43.333 8.771 25.976 1 87.61 ? C5 3L6 301 C 1 HETATM 23 N N7 3L6 . . . I 2 -43.193 9.965 26.709 1 86.64 ? N7 3L6 301 C 1 HETATM 24 C C8 3L6 . . . I 2 -42.345 9.747 27.756 1 92.55 ? C8 3L6 301 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 24 #