data_4RAQ # _model_server_result.job_id OV7SaW5HqLsnNveFEDvL6Q _model_server_result.datetime_utc '2024-10-18 16:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4raq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":303}' # _entry.id 4RAQ # _exptl.entry_id 4RAQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RAQ _cell.length_a 76.328 _cell.length_b 92.605 _cell.length_c 115.013 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RAQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 134 A ASP 134 1_555 G MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A OD2 ASP 134 A ASP 134 1_555 G MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc3 A OD1 ASP 193 A ASP 193 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc4 E OAG 3L8 . A 3L8 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc5 E OAT 3L8 . A 3L8 301 1_555 G MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc6 F MG MG . A MG 302 1_555 Q O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 F MG MG . A MG 302 1_555 Q O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc8 G MG MG . A MG 303 1_555 Q O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc9 G MG MG . A MG 303 1_555 Q O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc10 B OE1 GLU 133 B GLU 133 1_555 J MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc11 B OD1 ASP 134 B ASP 134 1_555 J MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc12 B OD1 ASP 193 B ASP 193 1_555 I MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc13 H OAC 3L8 . B 3L8 301 1_555 J MG MG . B MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc14 I MG MG . B MG 302 1_555 R O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc15 I MG MG . B MG 302 1_555 R O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc16 I MG MG . B MG 302 1_555 R O HOH . B HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc17 J MG MG . B MG 303 1_555 R O HOH . B HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc18 J MG MG . B MG 303 1_555 R O HOH . B HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc19 J MG MG . B MG 303 1_555 R O HOH . B HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc20 C OD1 ASP 134 C ASP 134 1_555 M MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc21 C OD1 ASP 193 C ASP 193 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc22 C OD2 ASP 193 C ASP 193 1_555 L MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc23 L MG MG . C MG 302 1_555 S O HOH . C HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc24 L MG MG . C MG 302 1_555 S O HOH . C HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc25 L MG MG . C MG 302 1_555 S O HOH . C HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc26 M MG MG . C MG 303 1_555 S O HOH . C HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc27 D OE2 GLU 133 D GLU 133 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc28 D OD1 ASP 134 D ASP 134 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc29 D OD2 ASP 134 D ASP 134 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc30 D OD1 ASP 193 D ASP 193 1_555 P MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc31 N OAC 3L8 . D 3L8 301 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc32 N OAF 3L8 . D 3L8 301 1_555 P MG MG . D MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc33 O MG MG . D MG 302 1_555 T O HOH . D HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc34 P MG MG . D MG 303 1_555 T O HOH . D HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RAQ _atom_sites.fract_transf_matrix[1][1] 0.013101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3L8 A 1 301 1 3L8 DRG . F 3 MG A 1 302 3 MG MG . G 3 MG A 1 303 4 MG MG . H 2 3L8 B 1 301 1 3L8 DRG . I 3 MG B 1 302 2 MG MG . J 3 MG B 1 303 8 MG MG . K 2 3L8 C 1 301 1 3L8 DRG . L 3 MG C 1 302 5 MG MG . M 3 MG C 1 303 7 MG MG . N 2 3L8 D 1 301 1 3L8 DRG . O 3 MG D 1 302 1 MG MG . P 3 MG D 1 303 6 MG MG . Q 4 HOH A 1 401 4 HOH HOH . Q 4 HOH A 2 402 7 HOH HOH . Q 4 HOH A 3 403 10 HOH HOH . Q 4 HOH A 4 404 11 HOH HOH . Q 4 HOH A 5 405 14 HOH HOH . Q 4 HOH A 6 406 17 HOH HOH . Q 4 HOH A 7 407 20 HOH HOH . Q 4 HOH A 8 408 26 HOH HOH . Q 4 HOH A 9 409 29 HOH HOH . Q 4 HOH A 10 410 32 HOH HOH . Q 4 HOH A 11 411 35 HOH HOH . Q 4 HOH A 12 412 38 HOH HOH . Q 4 HOH A 13 413 40 HOH HOH . Q 4 HOH A 14 414 50 HOH HOH . Q 4 HOH A 15 415 58 HOH HOH . Q 4 HOH A 16 416 70 HOH HOH . Q 4 HOH A 17 417 75 HOH HOH . Q 4 HOH A 18 418 78 HOH HOH . Q 4 HOH A 19 419 79 HOH HOH . Q 4 HOH A 20 420 89 HOH HOH . Q 4 HOH A 21 421 99 HOH HOH . Q 4 HOH A 22 422 101 HOH HOH . Q 4 HOH A 23 423 106 HOH HOH . Q 4 HOH A 24 424 107 HOH HOH . Q 4 HOH A 25 425 110 HOH HOH . Q 4 HOH A 26 426 114 HOH HOH . Q 4 HOH A 27 427 115 HOH HOH . Q 4 HOH A 28 428 116 HOH HOH . Q 4 HOH A 29 429 122 HOH HOH . Q 4 HOH A 30 430 124 HOH HOH . Q 4 HOH A 31 431 125 HOH HOH . R 4 HOH B 1 401 2 HOH HOH . R 4 HOH B 2 402 5 HOH HOH . R 4 HOH B 3 403 8 HOH HOH . R 4 HOH B 4 404 9 HOH HOH . R 4 HOH B 5 405 12 HOH HOH . R 4 HOH B 6 406 21 HOH HOH . R 4 HOH B 7 407 22 HOH HOH . R 4 HOH B 8 408 25 HOH HOH . R 4 HOH B 9 409 33 HOH HOH . R 4 HOH B 10 410 36 HOH HOH . R 4 HOH B 11 411 37 HOH HOH . R 4 HOH B 12 412 41 HOH HOH . R 4 HOH B 13 413 42 HOH HOH . R 4 HOH B 14 414 49 HOH HOH . R 4 HOH B 15 415 54 HOH HOH . R 4 HOH B 16 416 61 HOH HOH . R 4 HOH B 17 417 73 HOH HOH . R 4 HOH B 18 418 76 HOH HOH . R 4 HOH B 19 419 77 HOH HOH . R 4 HOH B 20 420 80 HOH HOH . R 4 HOH B 21 421 81 HOH HOH . R 4 HOH B 22 422 85 HOH HOH . R 4 HOH B 23 423 88 HOH HOH . R 4 HOH B 24 424 92 HOH HOH . R 4 HOH B 25 425 94 HOH HOH . R 4 HOH B 26 426 95 HOH HOH . R 4 HOH B 27 427 104 HOH HOH . R 4 HOH B 28 428 105 HOH HOH . R 4 HOH B 29 429 111 HOH HOH . R 4 HOH B 30 430 117 HOH HOH . R 4 HOH B 31 431 118 HOH HOH . R 4 HOH B 32 432 126 HOH HOH . R 4 HOH B 33 433 127 HOH HOH . S 4 HOH C 1 401 1 HOH HOH . S 4 HOH C 2 402 3 HOH HOH . S 4 HOH C 3 403 6 HOH HOH . S 4 HOH C 4 404 15 HOH HOH . S 4 HOH C 5 405 16 HOH HOH . S 4 HOH C 6 406 24 HOH HOH . S 4 HOH C 7 407 31 HOH HOH . S 4 HOH C 8 408 34 HOH HOH . S 4 HOH C 9 409 39 HOH HOH . S 4 HOH C 10 410 45 HOH HOH . S 4 HOH C 11 411 53 HOH HOH . S 4 HOH C 12 412 55 HOH HOH . S 4 HOH C 13 413 59 HOH HOH . S 4 HOH C 14 414 62 HOH HOH . S 4 HOH C 15 415 65 HOH HOH . S 4 HOH C 16 416 69 HOH HOH . S 4 HOH C 17 417 71 HOH HOH . S 4 HOH C 18 418 72 HOH HOH . S 4 HOH C 19 419 74 HOH HOH . S 4 HOH C 20 420 83 HOH HOH . S 4 HOH C 21 421 90 HOH HOH . S 4 HOH C 22 422 93 HOH HOH . S 4 HOH C 23 423 97 HOH HOH . S 4 HOH C 24 424 100 HOH HOH . S 4 HOH C 25 425 102 HOH HOH . S 4 HOH C 26 426 108 HOH HOH . S 4 HOH C 27 427 109 HOH HOH . S 4 HOH C 28 428 112 HOH HOH . S 4 HOH C 29 429 113 HOH HOH . S 4 HOH C 30 430 119 HOH HOH . S 4 HOH C 31 431 120 HOH HOH . S 4 HOH C 32 432 128 HOH HOH . T 4 HOH D 1 401 13 HOH HOH . T 4 HOH D 2 402 18 HOH HOH . T 4 HOH D 3 403 19 HOH HOH . T 4 HOH D 4 404 23 HOH HOH . T 4 HOH D 5 405 27 HOH HOH . T 4 HOH D 6 406 28 HOH HOH . T 4 HOH D 7 407 30 HOH HOH . T 4 HOH D 8 408 44 HOH HOH . T 4 HOH D 9 409 46 HOH HOH . T 4 HOH D 10 410 48 HOH HOH . T 4 HOH D 11 411 51 HOH HOH . T 4 HOH D 12 412 52 HOH HOH . T 4 HOH D 13 413 56 HOH HOH . T 4 HOH D 14 414 57 HOH HOH . T 4 HOH D 15 415 60 HOH HOH . T 4 HOH D 16 416 63 HOH HOH . T 4 HOH D 17 417 64 HOH HOH . T 4 HOH D 18 418 66 HOH HOH . T 4 HOH D 19 419 67 HOH HOH . T 4 HOH D 20 420 82 HOH HOH . T 4 HOH D 21 421 84 HOH HOH . T 4 HOH D 22 422 87 HOH HOH . T 4 HOH D 23 423 91 HOH HOH . T 4 HOH D 24 424 96 HOH HOH . T 4 HOH D 25 425 98 HOH HOH . T 4 HOH D 26 426 103 HOH HOH . T 4 HOH D 27 427 123 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 43.685 _atom_site.Cartn_y -5.208 _atom_site.Cartn_z 18.072 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 303 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #