data_4RBL # _model_server_result.job_id Uh1BJGO45oCLNMz1ZaSfHQ _model_server_result.datetime_utc '2024-11-23 00:44:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4RBL # _exptl.entry_id 4RBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.21 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4,5,8-tetrahydroxyanthracene-9,10-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RBL _cell.length_a 98.418 _cell.length_b 98.418 _cell.length_c 80.319 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 236 A SER 260 1_555 A N SEP 237 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale2 A C SEP 237 A SEP 261 1_555 A N GLU 238 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? # _chem_comp.formula 'C14 H8 O6' _chem_comp.formula_weight 272.21 _chem_comp.id 3O7 _chem_comp.mon_nstd_flag . _chem_comp.name 1,4,5,8-tetrahydroxyanthracene-9,10-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,4,5,8-Tetrahydroxy anthraquinone' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAF CAX 3O7 sing 1 n n OAB CBB 3O7 doub 2 n n O1 CAZ 3O7 sing 3 n n CAX CAH 3O7 doub 4 n y CAX CBD 3O7 sing 5 n y CBB CBD 3O7 sing 6 n n CBB CBF 3O7 sing 7 n n CAH CAG 3O7 sing 8 n y CBD CBC 3O7 doub 9 n y CAZ CBF 3O7 doub 10 n y CAZ CAJ 3O7 sing 11 n y CBF CBE 3O7 sing 12 n y CAG CAW 3O7 doub 13 n y CAJ CAI 3O7 doub 14 n y CBC CAW 3O7 sing 15 n y CBC CBA 3O7 sing 16 n n CAW OAE 3O7 sing 17 n n CBE CBA 3O7 sing 18 n n CBE CAY 3O7 doub 19 n y CBA OAA 3O7 doub 20 n n CAI CAY 3O7 sing 21 n y CAY O2 3O7 sing 22 n n O2 H1 3O7 sing 23 n n CAI H2 3O7 sing 24 n n CAJ H3 3O7 sing 25 n n O1 H6 3O7 sing 26 n n OAE H7 3O7 sing 27 n n CAG H8 3O7 sing 28 n n CAH H9 3O7 sing 29 n n OAF H10 3O7 sing 30 n n # _atom_sites.entry_id 4RBL _atom_sites.fract_transf_matrix[1][1] 0.010161 _atom_sites.fract_transf_matrix[1][2] 0.005866 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 3O7 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 3O7 _pdbx_nonpoly_scheme.auth_mon_id MX2 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 3O7 . . . B 2 119.074 37.689 2.125 1 110.53 ? O2 3O7 401 A 1 HETATM 2 C CAY 3O7 . . . B 2 119.036 38.108 0.805 1 112.55 ? CAY 3O7 401 A 1 HETATM 3 C CAI 3O7 . . . B 2 119.906 39.078 0.395 1 104.9 ? CAI 3O7 401 A 1 HETATM 4 C CBE 3O7 . . . B 2 118.096 37.525 -0.1 1 115.54 ? CBE 3O7 401 A 1 HETATM 5 C CAJ 3O7 . . . B 2 119.882 39.507 -0.875 1 107.12 ? CAJ 3O7 401 A 1 HETATM 6 C CBA 3O7 . . . B 2 117.123 36.441 0.342 1 126.12 ? CBA 3O7 401 A 1 HETATM 7 O OAA 3O7 . . . B 2 117.148 36.003 1.657 1 138.87 ? OAA 3O7 401 A 1 HETATM 8 C CBF 3O7 . . . B 2 118.06 37.978 -1.469 1 102.68 ? CBF 3O7 401 A 1 HETATM 9 C CBC 3O7 . . . B 2 116.117 35.826 -0.619 1 121.29 ? CBC 3O7 401 A 1 HETATM 10 C CAZ 3O7 . . . B 2 119.015 39.016 -1.823 1 102.61 ? CAZ 3O7 401 A 1 HETATM 11 C CBB 3O7 . . . B 2 117.043 37.348 -2.402 1 102.42 ? CBB 3O7 401 A 1 HETATM 12 O OAB 3O7 . . . B 2 116.995 37.769 -3.695 1 112.94 ? OAB 3O7 401 A 1 HETATM 13 C CAW 3O7 . . . B 2 115.208 34.817 -0.186 1 124.4 ? CAW 3O7 401 A 1 HETATM 14 O O1 3O7 . . . B 2 119.121 39.568 -3.09 1 105.66 ? O1 3O7 401 A 1 HETATM 15 O OAE 3O7 . . . B 2 115.202 34.362 1.12 1 141.09 ? OAE 3O7 401 A 1 HETATM 16 C CAG 3O7 . . . B 2 114.315 34.271 -1.042 1 109.14 ? CAG 3O7 401 A 1 HETATM 17 C CAH 3O7 . . . B 2 114.26 34.666 -2.319 1 113.33 ? CAH 3O7 401 A 1 HETATM 18 C CAX 3O7 . . . B 2 115.077 35.642 -2.861 1 116.48 ? CAX 3O7 401 A 1 HETATM 19 O OAF 3O7 . . . B 2 114.862 35.964 -4.212 1 103.46 ? OAF 3O7 401 A 1 HETATM 20 C CBD 3O7 . . . B 2 116.067 36.266 -1.99 1 107.83 ? CBD 3O7 401 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #