data_4RBS # _model_server_result.job_id zS8lt28zQS7tR-GmGZPMvw _model_server_result.datetime_utc '2024-11-05 03:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 4RBS # _exptl.entry_id 4RBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3-methyl-2H-pyrro le-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RBS _cell.length_a 74.428 _cell.length_b 74.428 _cell.length_c 219.96 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 120 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A ND1 HIS 95 A HIS 122 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc3 A OD2 ASP 97 A ASP 124 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc4 A NE2 HIS 162 A HIS 189 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc5 A SG CYS 181 A CYS 208 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A NE2 HIS 223 A HIS 250 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc7 C ZN ZN . A ZN 300 1_555 E OAF 0RV . A 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc8 D ZN ZN . A ZN 301 1_555 E NAN 0RV . A 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 B NE2 HIS 93 B HIS 120 1_555 I ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc10 B ND1 HIS 95 B HIS 122 1_555 I ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc11 B OD2 ASP 97 B ASP 124 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc12 B NE2 HIS 162 B HIS 189 1_555 I ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc13 B SG CYS 181 B CYS 208 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc14 B NE2 HIS 223 B HIS 250 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc15 I ZN ZN . B ZN 300 1_555 K OAF 0RV . B 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc16 J ZN ZN . B ZN 301 1_555 K NAN 0RV . B 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C17 H25 N3 O6 S' _chem_comp.formula_weight 399.462 _chem_comp.id 0RV _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3-methyl-2H-pyrro le-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Meropenem, hydroxylated form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAV 0RV sing 1 n n CAA CAU 0RV sing 2 n n CAU OAJ 0RV sing 3 n n CAU CBA 0RV sing 4 n n CA CB 0RV sing 5 n n CA N 0RV sing 6 n n CA C 0RV sing 7 n n CB CG 0RV sing 8 n n CAZ CAV 0RV sing 9 n n CAZ CBA 0RV sing 10 n n CAZ NAN 0RV sing 11 n n CAV CAT 0RV doub 12 n n CG CD 0RV sing 13 n n CG SAO 0RV sing 14 n n N CD 0RV sing 15 n n C O 0RV doub 16 n n C NAY 0RV sing 17 n n CAD NAY 0RV sing 18 n n NAY CAC 0RV sing 19 n n CBA CAQ 0RV sing 20 n n NAN CAS 0RV doub 21 n n CAT SAO 0RV sing 22 n n CAT CAS 0RV sing 23 n n CAS CAP 0RV sing 24 n n CAQ OAF 0RV doub 25 n n CAQ OAI 0RV sing 26 n n CAP OAH 0RV doub 27 n n CAP OAE 0RV sing 28 n n CAC H1 0RV sing 29 n n CAC H2 0RV sing 30 n n CAC H3 0RV sing 31 n n CAD H4 0RV sing 32 n n CAD H5 0RV sing 33 n n CAD H6 0RV sing 34 n n CA H7 0RV sing 35 n n CB H8 0RV sing 36 n n CB H9 0RV sing 37 n n N H10 0RV sing 38 n n CD H12 0RV sing 39 n n CD H13 0RV sing 40 n n CG H14 0RV sing 41 n n CAB H15 0RV sing 42 n n CAB H16 0RV sing 43 n n CAB H17 0RV sing 44 n n OAE H18 0RV sing 45 n n CAZ H19 0RV sing 46 n n CBA H20 0RV sing 47 n n OAI H21 0RV sing 48 n n CAU H22 0RV sing 49 n n OAJ H23 0RV sing 50 n n CAA H24 0RV sing 51 n n CAA H25 0RV sing 52 n n CAA H26 0RV sing 53 n n # _atom_sites.entry_id 4RBS _atom_sites.fract_transf_matrix[1][1] 0.013436 _atom_sites.fract_transf_matrix[1][2] 0.007757 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 300 300 ZN ZN . D 2 ZN A 1 301 301 ZN ZN . E 3 0RV A 1 302 302 0RV 0RV . F 4 ACY A 1 303 303 ACY ACY . G 5 GOL A 1 304 304 GOL GOL . H 5 GOL A 1 305 305 GOL GOL . I 2 ZN B 1 300 300 ZN ZN . J 2 ZN B 1 301 301 ZN ZN . K 3 0RV B 1 302 302 0RV 0RV . L 4 ACY B 1 303 303 ACY ACY . M 4 ACY B 1 304 304 ACY ACY . N 5 GOL B 1 305 305 GOL GOL . O 4 ACY B 1 306 306 ACY ACY . P 6 HOH A 1 401 1 HOH HOH . P 6 HOH A 2 402 4 HOH HOH . P 6 HOH A 3 403 7 HOH HOH . P 6 HOH A 4 404 9 HOH HOH . P 6 HOH A 5 405 10 HOH HOH . P 6 HOH A 6 406 12 HOH HOH . P 6 HOH A 7 407 13 HOH HOH . P 6 HOH A 8 408 14 HOH HOH . P 6 HOH A 9 409 15 HOH HOH . P 6 HOH A 10 410 16 HOH HOH . P 6 HOH A 11 411 17 HOH HOH . P 6 HOH A 12 412 19 HOH HOH . P 6 HOH A 13 413 20 HOH HOH . P 6 HOH A 14 414 24 HOH HOH . P 6 HOH A 15 415 30 HOH HOH . P 6 HOH A 16 416 33 HOH HOH . P 6 HOH A 17 417 34 HOH HOH . P 6 HOH A 18 418 35 HOH HOH . P 6 HOH A 19 419 36 HOH HOH . P 6 HOH A 20 420 37 HOH HOH . P 6 HOH A 21 421 38 HOH HOH . P 6 HOH A 22 422 39 HOH HOH . P 6 HOH A 23 423 41 HOH HOH . P 6 HOH A 24 424 43 HOH HOH . P 6 HOH A 25 425 44 HOH HOH . P 6 HOH A 26 426 45 HOH HOH . P 6 HOH A 27 427 46 HOH HOH . P 6 HOH A 28 428 49 HOH HOH . P 6 HOH A 29 429 52 HOH HOH . P 6 HOH A 30 430 53 HOH HOH . P 6 HOH A 31 431 55 HOH HOH . P 6 HOH A 32 432 60 HOH HOH . P 6 HOH A 33 433 61 HOH HOH . P 6 HOH A 34 434 62 HOH HOH . P 6 HOH A 35 435 66 HOH HOH . P 6 HOH A 36 436 67 HOH HOH . P 6 HOH A 37 437 68 HOH HOH . P 6 HOH A 38 438 69 HOH HOH . P 6 HOH A 39 439 70 HOH HOH . P 6 HOH A 40 440 72 HOH HOH . P 6 HOH A 41 441 73 HOH HOH . P 6 HOH A 42 442 74 HOH HOH . P 6 HOH A 43 443 79 HOH HOH . P 6 HOH A 44 444 81 HOH HOH . P 6 HOH A 45 445 82 HOH HOH . P 6 HOH A 46 446 83 HOH HOH . P 6 HOH A 47 447 87 HOH HOH . P 6 HOH A 48 448 88 HOH HOH . P 6 HOH A 49 449 89 HOH HOH . P 6 HOH A 50 450 90 HOH HOH . P 6 HOH A 51 451 93 HOH HOH . Q 6 HOH B 1 401 2 HOH HOH . Q 6 HOH B 2 402 3 HOH HOH . Q 6 HOH B 3 403 5 HOH HOH . Q 6 HOH B 4 404 6 HOH HOH . Q 6 HOH B 5 405 8 HOH HOH . Q 6 HOH B 6 406 11 HOH HOH . Q 6 HOH B 7 407 18 HOH HOH . Q 6 HOH B 8 408 21 HOH HOH . Q 6 HOH B 9 409 22 HOH HOH . Q 6 HOH B 10 410 23 HOH HOH . Q 6 HOH B 11 411 25 HOH HOH . Q 6 HOH B 12 412 26 HOH HOH . Q 6 HOH B 13 413 27 HOH HOH . Q 6 HOH B 14 414 28 HOH HOH . Q 6 HOH B 15 415 29 HOH HOH . Q 6 HOH B 16 416 31 HOH HOH . Q 6 HOH B 17 417 32 HOH HOH . Q 6 HOH B 18 418 40 HOH HOH . Q 6 HOH B 19 419 42 HOH HOH . Q 6 HOH B 20 420 47 HOH HOH . Q 6 HOH B 21 421 48 HOH HOH . Q 6 HOH B 22 422 50 HOH HOH . Q 6 HOH B 23 423 51 HOH HOH . Q 6 HOH B 24 424 54 HOH HOH . Q 6 HOH B 25 425 56 HOH HOH . Q 6 HOH B 26 426 57 HOH HOH . Q 6 HOH B 27 427 58 HOH HOH . Q 6 HOH B 28 428 59 HOH HOH . Q 6 HOH B 29 429 63 HOH HOH . Q 6 HOH B 30 430 64 HOH HOH . Q 6 HOH B 31 431 65 HOH HOH . Q 6 HOH B 32 432 71 HOH HOH . Q 6 HOH B 33 433 75 HOH HOH . Q 6 HOH B 34 434 76 HOH HOH . Q 6 HOH B 35 435 77 HOH HOH . Q 6 HOH B 36 436 78 HOH HOH . Q 6 HOH B 37 437 80 HOH HOH . Q 6 HOH B 38 438 84 HOH HOH . Q 6 HOH B 39 439 85 HOH HOH . Q 6 HOH B 40 440 86 HOH HOH . Q 6 HOH B 41 441 91 HOH HOH . Q 6 HOH B 42 442 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 0RV . . . K 3 -36.933 15.128 0.552 1 99.97 ? O 0RV 302 B 1 HETATM 2 C C 0RV . . . K 3 -37.916 14.419 0.403 1 102.59 ? C 0RV 302 B 1 HETATM 3 N NAY 0RV . . . K 3 -38.869 14.3 1.328 1 104.29 ? NAY 0RV 302 B 1 HETATM 4 C CAC 0RV . . . K 3 -39.005 15.25 2.421 1 103.29 ? CAC 0RV 302 B 1 HETATM 5 C CAD 0RV . . . K 3 -39.856 13.23 1.327 1 100.15 ? CAD 0RV 302 B 1 HETATM 6 C CA 0RV . . . K 3 -38.111 13.651 -0.87 1 93.02 ? CA 0RV 302 B 1 HETATM 7 C CB 0RV . . . K 3 -36.797 13.001 -1.29 1 89.78 ? CB 0RV 302 B 1 HETATM 8 N N 0RV . . . K 3 -38.497 14.58 -1.951 1 87.19 ? N 0RV 302 B 1 HETATM 9 C CD 0RV . . . K 3 -37.298 14.824 -2.77 1 88.28 ? CD 0RV 302 B 1 HETATM 10 C CG 0RV . . . K 3 -36.461 13.56 -2.664 1 88.93 ? CG 0RV 302 B 1 HETATM 11 S SAO 0RV . . . K 3 -34.739 13.926 -2.83 1 88.25 ? SAO 0RV 302 B 1 HETATM 12 C CAT 0RV . . . K 3 -34.312 13.942 -4.446 1 91.9 ? CAT 0RV 302 B 1 HETATM 13 C CAV 0RV . . . K 3 -33.86 12.697 -5.152 1 83.31 ? CAV 0RV 302 B 1 HETATM 14 C CAB 0RV . . . K 3 -32.76 11.996 -4.364 1 78.55 ? CAB 0RV 302 B 1 HETATM 15 C CAS 0RV . . . K 3 -34.328 14.98 -5.287 1 91.19 ? CAS 0RV 302 B 1 HETATM 16 C CAP 0RV . . . K 3 -34.692 16.246 -5.049 1 93.02 ? CAP 0RV 302 B 1 HETATM 17 O OAE 0RV . . . K 3 -34.628 17.057 -5.997 1 90.62 ? OAE 0RV 302 B 1 HETATM 18 O OAH 0RV . . . K 3 -35.085 16.622 -3.926 1 100.15 ? OAH 0RV 302 B 1 HETATM 19 N NAN 0RV . . . K 3 -33.906 14.605 -6.489 1 85.57 ? NAN 0RV 302 B 1 HETATM 20 C CAZ 0RV . . . K 3 -33.44 13.232 -6.524 1 82.2 ? CAZ 0RV 302 B 1 HETATM 21 C CBA 0RV . . . K 3 -31.935 13.218 -6.775 1 84.86 ? CBA 0RV 302 B 1 HETATM 22 C CAQ 0RV . . . K 3 -31.549 14.53 -7.407 1 86.42 ? CAQ 0RV 302 B 1 HETATM 23 O OAF 0RV . . . K 3 -32.344 15.078 -8.204 1 82.47 ? OAF 0RV 302 B 1 HETATM 24 O OAI 0RV . . . K 3 -30.449 15.038 -7.099 1 89.28 ? OAI 0RV 302 B 1 HETATM 25 C CAU 0RV . . . K 3 -31.499 12.01 -7.617 1 79.86 ? CAU 0RV 302 B 1 HETATM 26 O OAJ 0RV . . . K 3 -30.209 11.559 -7.183 1 86.58 ? OAJ 0RV 302 B 1 HETATM 27 C CAA 0RV . . . K 3 -31.451 12.279 -9.115 1 71.01 ? CAA 0RV 302 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #