data_4RBS # _model_server_result.job_id SxUysZXn1lGf-QSGg9xJPA _model_server_result.datetime_utc '2024-11-05 03:56:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 4RBS # _exptl.entry_id 4RBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RBS _cell.length_a 74.428 _cell.length_b 74.428 _cell.length_c 219.96 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 120 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A ND1 HIS 95 A HIS 122 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc3 A OD2 ASP 97 A ASP 124 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc4 A NE2 HIS 162 A HIS 189 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc5 A SG CYS 181 A CYS 208 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A NE2 HIS 223 A HIS 250 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc7 C ZN ZN . A ZN 300 1_555 E OAF 0RV . A 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc8 D ZN ZN . A ZN 301 1_555 E NAN 0RV . A 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 B NE2 HIS 93 B HIS 120 1_555 I ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc10 B ND1 HIS 95 B HIS 122 1_555 I ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc11 B OD2 ASP 97 B ASP 124 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc12 B NE2 HIS 162 B HIS 189 1_555 I ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc13 B SG CYS 181 B CYS 208 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc14 B NE2 HIS 223 B HIS 250 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc15 I ZN ZN . B ZN 300 1_555 K OAF 0RV . B 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc16 J ZN ZN . B ZN 301 1_555 K NAN 0RV . B 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 189 n n C1 C2 GOL sing 190 n n C1 H11 GOL sing 191 n n C1 H12 GOL sing 192 n n O1 HO1 GOL sing 193 n n C2 O2 GOL sing 194 n n C2 C3 GOL sing 195 n n C2 H2 GOL sing 196 n n O2 HO2 GOL sing 197 n n C3 O3 GOL sing 198 n n C3 H31 GOL sing 199 n n C3 H32 GOL sing 200 n n O3 HO3 GOL sing 201 n n # _atom_sites.entry_id 4RBS _atom_sites.fract_transf_matrix[1][1] 0.013436 _atom_sites.fract_transf_matrix[1][2] 0.007757 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 300 300 ZN ZN . D 2 ZN A 1 301 301 ZN ZN . E 3 0RV A 1 302 302 0RV 0RV . F 4 ACY A 1 303 303 ACY ACY . G 5 GOL A 1 304 304 GOL GOL . H 5 GOL A 1 305 305 GOL GOL . I 2 ZN B 1 300 300 ZN ZN . J 2 ZN B 1 301 301 ZN ZN . K 3 0RV B 1 302 302 0RV 0RV . L 4 ACY B 1 303 303 ACY ACY . M 4 ACY B 1 304 304 ACY ACY . N 5 GOL B 1 305 305 GOL GOL . O 4 ACY B 1 306 306 ACY ACY . P 6 HOH A 1 401 1 HOH HOH . P 6 HOH A 2 402 4 HOH HOH . P 6 HOH A 3 403 7 HOH HOH . P 6 HOH A 4 404 9 HOH HOH . P 6 HOH A 5 405 10 HOH HOH . P 6 HOH A 6 406 12 HOH HOH . P 6 HOH A 7 407 13 HOH HOH . P 6 HOH A 8 408 14 HOH HOH . P 6 HOH A 9 409 15 HOH HOH . P 6 HOH A 10 410 16 HOH HOH . P 6 HOH A 11 411 17 HOH HOH . P 6 HOH A 12 412 19 HOH HOH . P 6 HOH A 13 413 20 HOH HOH . P 6 HOH A 14 414 24 HOH HOH . P 6 HOH A 15 415 30 HOH HOH . P 6 HOH A 16 416 33 HOH HOH . P 6 HOH A 17 417 34 HOH HOH . P 6 HOH A 18 418 35 HOH HOH . P 6 HOH A 19 419 36 HOH HOH . P 6 HOH A 20 420 37 HOH HOH . P 6 HOH A 21 421 38 HOH HOH . P 6 HOH A 22 422 39 HOH HOH . P 6 HOH A 23 423 41 HOH HOH . P 6 HOH A 24 424 43 HOH HOH . P 6 HOH A 25 425 44 HOH HOH . P 6 HOH A 26 426 45 HOH HOH . P 6 HOH A 27 427 46 HOH HOH . P 6 HOH A 28 428 49 HOH HOH . P 6 HOH A 29 429 52 HOH HOH . P 6 HOH A 30 430 53 HOH HOH . P 6 HOH A 31 431 55 HOH HOH . P 6 HOH A 32 432 60 HOH HOH . P 6 HOH A 33 433 61 HOH HOH . P 6 HOH A 34 434 62 HOH HOH . P 6 HOH A 35 435 66 HOH HOH . P 6 HOH A 36 436 67 HOH HOH . P 6 HOH A 37 437 68 HOH HOH . P 6 HOH A 38 438 69 HOH HOH . P 6 HOH A 39 439 70 HOH HOH . P 6 HOH A 40 440 72 HOH HOH . P 6 HOH A 41 441 73 HOH HOH . P 6 HOH A 42 442 74 HOH HOH . P 6 HOH A 43 443 79 HOH HOH . P 6 HOH A 44 444 81 HOH HOH . P 6 HOH A 45 445 82 HOH HOH . P 6 HOH A 46 446 83 HOH HOH . P 6 HOH A 47 447 87 HOH HOH . P 6 HOH A 48 448 88 HOH HOH . P 6 HOH A 49 449 89 HOH HOH . P 6 HOH A 50 450 90 HOH HOH . P 6 HOH A 51 451 93 HOH HOH . Q 6 HOH B 1 401 2 HOH HOH . Q 6 HOH B 2 402 3 HOH HOH . Q 6 HOH B 3 403 5 HOH HOH . Q 6 HOH B 4 404 6 HOH HOH . Q 6 HOH B 5 405 8 HOH HOH . Q 6 HOH B 6 406 11 HOH HOH . Q 6 HOH B 7 407 18 HOH HOH . Q 6 HOH B 8 408 21 HOH HOH . Q 6 HOH B 9 409 22 HOH HOH . Q 6 HOH B 10 410 23 HOH HOH . Q 6 HOH B 11 411 25 HOH HOH . Q 6 HOH B 12 412 26 HOH HOH . Q 6 HOH B 13 413 27 HOH HOH . Q 6 HOH B 14 414 28 HOH HOH . Q 6 HOH B 15 415 29 HOH HOH . Q 6 HOH B 16 416 31 HOH HOH . Q 6 HOH B 17 417 32 HOH HOH . Q 6 HOH B 18 418 40 HOH HOH . Q 6 HOH B 19 419 42 HOH HOH . Q 6 HOH B 20 420 47 HOH HOH . Q 6 HOH B 21 421 48 HOH HOH . Q 6 HOH B 22 422 50 HOH HOH . Q 6 HOH B 23 423 51 HOH HOH . Q 6 HOH B 24 424 54 HOH HOH . Q 6 HOH B 25 425 56 HOH HOH . Q 6 HOH B 26 426 57 HOH HOH . Q 6 HOH B 27 427 58 HOH HOH . Q 6 HOH B 28 428 59 HOH HOH . Q 6 HOH B 29 429 63 HOH HOH . Q 6 HOH B 30 430 64 HOH HOH . Q 6 HOH B 31 431 65 HOH HOH . Q 6 HOH B 32 432 71 HOH HOH . Q 6 HOH B 33 433 75 HOH HOH . Q 6 HOH B 34 434 76 HOH HOH . Q 6 HOH B 35 435 77 HOH HOH . Q 6 HOH B 36 436 78 HOH HOH . Q 6 HOH B 37 437 80 HOH HOH . Q 6 HOH B 38 438 84 HOH HOH . Q 6 HOH B 39 439 85 HOH HOH . Q 6 HOH B 40 440 86 HOH HOH . Q 6 HOH B 41 441 91 HOH HOH . Q 6 HOH B 42 442 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 -48.603 -1.808 25.314 1 94.65 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . G 5 -48.737 -0.433 25.035 1 92.03 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . G 5 -48.915 -2.065 26.783 1 93.71 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . G 5 -48.23 -3.214 27.227 1 94.55 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . G 5 -48.482 -0.868 27.619 1 90.34 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . G 5 -48.209 -1.301 28.933 1 90.35 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #