data_4RBS
#
_model_server_result.job_id            WhLEnyJ60CvpplnkreBORg 
_model_server_result.datetime_utc      '2024-11-05 03:31:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rbs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":305}' 
#
_entry.id    4RBS 
#
_exptl.entry_id    4RBS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4RBS 
_cell.length_a            74.428 
_cell.length_b            74.428 
_cell.length_c            219.96 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RBS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,P 1 1 
B,I,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 120 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc2 A ND1 HIS 95 A HIS 122 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc3 A OD2 ASP 97 A ASP 124 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc4 A NE2 HIS 162 A HIS 189 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc5 A SG CYS 181 A CYS 208 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc6 A NE2 HIS 223 A HIS 250 1_555 D ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc7 C ZN ZN . A ZN 300 1_555 E OAF 0RV . A 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc8 D ZN ZN . A ZN 301 1_555 E NAN 0RV . A 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc9 B NE2 HIS 93 B HIS 120 1_555 I ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc10 B ND1 HIS 95 B HIS 122 1_555 I ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc11 B OD2 ASP 97 B ASP 124 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc12 B NE2 HIS 162 B HIS 189 1_555 I ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc13 B SG CYS 181 B CYS 208 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc14 B NE2 HIS 223 B HIS 250 1_555 J ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc15 I ZN ZN . B ZN 300 1_555 K OAF 0RV . B 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc16 J ZN ZN . B ZN 301 1_555 K NAN 0RV . B 0RV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 189 n n 
C1 C2 GOL sing 190 n n 
C1 H11 GOL sing 191 n n 
C1 H12 GOL sing 192 n n 
O1 HO1 GOL sing 193 n n 
C2 O2 GOL sing 194 n n 
C2 C3 GOL sing 195 n n 
C2 H2 GOL sing 196 n n 
O2 HO2 GOL sing 197 n n 
C3 O3 GOL sing 198 n n 
C3 H31 GOL sing 199 n n 
C3 H32 GOL sing 200 n n 
O3 HO3 GOL sing 201 n n 
#
_atom_sites.entry_id                     4RBS 
_atom_sites.fract_transf_matrix[1][1]    0.013436 
_atom_sites.fract_transf_matrix[1][2]    0.007757 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015514 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 300 300 ZN ZN . 
D 2 ZN A 1 301 301 ZN ZN . 
E 3 0RV A 1 302 302 0RV 0RV . 
F 4 ACY A 1 303 303 ACY ACY . 
G 5 GOL A 1 304 304 GOL GOL . 
H 5 GOL A 1 305 305 GOL GOL . 
I 2 ZN B 1 300 300 ZN ZN . 
J 2 ZN B 1 301 301 ZN ZN . 
K 3 0RV B 1 302 302 0RV 0RV . 
L 4 ACY B 1 303 303 ACY ACY . 
M 4 ACY B 1 304 304 ACY ACY . 
N 5 GOL B 1 305 305 GOL GOL . 
O 4 ACY B 1 306 306 ACY ACY . 
P 6 HOH A 1 401 1 HOH HOH . 
P 6 HOH A 2 402 4 HOH HOH . 
P 6 HOH A 3 403 7 HOH HOH . 
P 6 HOH A 4 404 9 HOH HOH . 
P 6 HOH A 5 405 10 HOH HOH . 
P 6 HOH A 6 406 12 HOH HOH . 
P 6 HOH A 7 407 13 HOH HOH . 
P 6 HOH A 8 408 14 HOH HOH . 
P 6 HOH A 9 409 15 HOH HOH . 
P 6 HOH A 10 410 16 HOH HOH . 
P 6 HOH A 11 411 17 HOH HOH . 
P 6 HOH A 12 412 19 HOH HOH . 
P 6 HOH A 13 413 20 HOH HOH . 
P 6 HOH A 14 414 24 HOH HOH . 
P 6 HOH A 15 415 30 HOH HOH . 
P 6 HOH A 16 416 33 HOH HOH . 
P 6 HOH A 17 417 34 HOH HOH . 
P 6 HOH A 18 418 35 HOH HOH . 
P 6 HOH A 19 419 36 HOH HOH . 
P 6 HOH A 20 420 37 HOH HOH . 
P 6 HOH A 21 421 38 HOH HOH . 
P 6 HOH A 22 422 39 HOH HOH . 
P 6 HOH A 23 423 41 HOH HOH . 
P 6 HOH A 24 424 43 HOH HOH . 
P 6 HOH A 25 425 44 HOH HOH . 
P 6 HOH A 26 426 45 HOH HOH . 
P 6 HOH A 27 427 46 HOH HOH . 
P 6 HOH A 28 428 49 HOH HOH . 
P 6 HOH A 29 429 52 HOH HOH . 
P 6 HOH A 30 430 53 HOH HOH . 
P 6 HOH A 31 431 55 HOH HOH . 
P 6 HOH A 32 432 60 HOH HOH . 
P 6 HOH A 33 433 61 HOH HOH . 
P 6 HOH A 34 434 62 HOH HOH . 
P 6 HOH A 35 435 66 HOH HOH . 
P 6 HOH A 36 436 67 HOH HOH . 
P 6 HOH A 37 437 68 HOH HOH . 
P 6 HOH A 38 438 69 HOH HOH . 
P 6 HOH A 39 439 70 HOH HOH . 
P 6 HOH A 40 440 72 HOH HOH . 
P 6 HOH A 41 441 73 HOH HOH . 
P 6 HOH A 42 442 74 HOH HOH . 
P 6 HOH A 43 443 79 HOH HOH . 
P 6 HOH A 44 444 81 HOH HOH . 
P 6 HOH A 45 445 82 HOH HOH . 
P 6 HOH A 46 446 83 HOH HOH . 
P 6 HOH A 47 447 87 HOH HOH . 
P 6 HOH A 48 448 88 HOH HOH . 
P 6 HOH A 49 449 89 HOH HOH . 
P 6 HOH A 50 450 90 HOH HOH . 
P 6 HOH A 51 451 93 HOH HOH . 
Q 6 HOH B 1 401 2 HOH HOH . 
Q 6 HOH B 2 402 3 HOH HOH . 
Q 6 HOH B 3 403 5 HOH HOH . 
Q 6 HOH B 4 404 6 HOH HOH . 
Q 6 HOH B 5 405 8 HOH HOH . 
Q 6 HOH B 6 406 11 HOH HOH . 
Q 6 HOH B 7 407 18 HOH HOH . 
Q 6 HOH B 8 408 21 HOH HOH . 
Q 6 HOH B 9 409 22 HOH HOH . 
Q 6 HOH B 10 410 23 HOH HOH . 
Q 6 HOH B 11 411 25 HOH HOH . 
Q 6 HOH B 12 412 26 HOH HOH . 
Q 6 HOH B 13 413 27 HOH HOH . 
Q 6 HOH B 14 414 28 HOH HOH . 
Q 6 HOH B 15 415 29 HOH HOH . 
Q 6 HOH B 16 416 31 HOH HOH . 
Q 6 HOH B 17 417 32 HOH HOH . 
Q 6 HOH B 18 418 40 HOH HOH . 
Q 6 HOH B 19 419 42 HOH HOH . 
Q 6 HOH B 20 420 47 HOH HOH . 
Q 6 HOH B 21 421 48 HOH HOH . 
Q 6 HOH B 22 422 50 HOH HOH . 
Q 6 HOH B 23 423 51 HOH HOH . 
Q 6 HOH B 24 424 54 HOH HOH . 
Q 6 HOH B 25 425 56 HOH HOH . 
Q 6 HOH B 26 426 57 HOH HOH . 
Q 6 HOH B 27 427 58 HOH HOH . 
Q 6 HOH B 28 428 59 HOH HOH . 
Q 6 HOH B 29 429 63 HOH HOH . 
Q 6 HOH B 30 430 64 HOH HOH . 
Q 6 HOH B 31 431 65 HOH HOH . 
Q 6 HOH B 32 432 71 HOH HOH . 
Q 6 HOH B 33 433 75 HOH HOH . 
Q 6 HOH B 34 434 76 HOH HOH . 
Q 6 HOH B 35 435 77 HOH HOH . 
Q 6 HOH B 36 436 78 HOH HOH . 
Q 6 HOH B 37 437 80 HOH HOH . 
Q 6 HOH B 38 438 84 HOH HOH . 
Q 6 HOH B 39 439 85 HOH HOH . 
Q 6 HOH B 40 440 86 HOH HOH . 
Q 6 HOH B 41 441 91 HOH HOH . 
Q 6 HOH B 42 442 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 5 -43.033 34.814 -17.862 1 93.12 ? C1 GOL 305 B 1 
HETATM 2 O O1 GOL . . . N 5 -42.48 34.702 -19.154 1 97.13 ? O1 GOL 305 B 1 
HETATM 3 C C2 GOL . . . N 5 -41.936 35.211 -16.881 1 92.72 ? C2 GOL 305 B 1 
HETATM 4 O O2 GOL . . . N 5 -40.675 34.894 -17.424 1 94.84 ? O2 GOL 305 B 1 
HETATM 5 C C3 GOL . . . N 5 -42.115 34.448 -15.577 1 87.21 ? C3 GOL 305 B 1 
HETATM 6 O O3 GOL . . . N 5 -40.957 34.608 -14.788 1 88.33 ? O3 GOL 305 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#