data_4RBY
#
_model_server_result.job_id            eULJ23lDiGsVecTsOBx4Lg 
_model_server_result.datetime_utc      '2024-11-12 20:56:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4RBY 
#
_exptl.entry_id    4RBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              87.62 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'STRONTIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          128.8 
_cell.angle_gamma         90 
_cell.entry_id            4RBY 
_cell.length_a            40.932 
_cell.length_b            35.015 
_cell.length_c            31.873 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -19.971743 0 24.839839 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' C 3 A C 103 1_555 A P 2SG 4 A 2SG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? 
covale ? covale2 A O3' 2SG 4 A 2SG 104 1_555 A P A 5 A A 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? 
metalc ? metalc1 B SR SR . A SR 401 1_555 D O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc2 B SR SR . A SR 401 1_555 D O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc3 C SR SR . A SR 402 1_555 D O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc4 C SR SR . A SR 402 1_555 D O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc5 C SR SR . A SR 402 1_555 D O HOH . A HOH 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
hydrog WATSON-CRICK hydrog1 A N3 C 1 A C 101 1_555 A N1 G 12 A G 112 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 C 1 A C 101 1_555 A O6 G 12 A G 112 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 C 1 A C 101 1_555 A N2 G 12 A G 112 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 102 1_555 A N3 C 11 A C 111 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 102 1_555 A O2 C 11 A C 111 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 102 1_555 A N4 C 11 A C 111 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 C 3 A C 103 1_555 A N1 G 10 A G 110 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 C 3 A C 103 1_555 A O6 G 10 A G 110 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 C 3 A C 103 1_555 A N2 G 10 A G 110 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 A 5 A A 105 1_555 A N3 U 8 A U 108 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N6 A 5 A A 105 1_555 A O4 U 8 A U 108 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N1 A 6 A A 106 1_555 A N3 U 7 A U 107 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N6 A 6 A A 106 1_555 A O4 U 7 A U 107 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N3 U 7 A U 107 1_555 A N1 A 6 A A 106 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O4 U 7 A U 107 1_555 A N6 A 6 A A 106 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N3 U 8 A U 108 1_555 A N1 A 5 A A 105 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O4 U 8 A U 108 1_555 A N6 A 5 A A 105 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N1 G 10 A G 110 1_555 A N3 C 3 A C 103 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N2 G 10 A G 110 1_555 A O2 C 3 A C 103 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O6 G 10 A G 110 1_555 A N4 C 3 A C 103 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A N3 C 11 A C 111 1_555 A N1 G 2 A G 102 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N4 C 11 A C 111 1_555 A O6 G 2 A G 102 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A O2 C 11 A C 111 1_555 A N2 G 2 A G 102 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A N1 G 12 A G 112 1_555 A N3 C 1 A C 101 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N2 G 12 A G 112 1_555 A O2 C 1 A C 101 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A O6 G 12 A G 112 1_555 A N4 C 1 A C 101 2_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Sr 2' 
_chem_comp.formula_weight    87.62 
_chem_comp.id                SR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'STRONTIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4RBY 
_atom_sites.fract_transf_matrix[1][1]    0.024431 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.019643 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028559 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.040258 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SR A 1 401 401 SR SR . 
C 2 SR A 1 402 402 SR SR . 
D 3 HOH A 1 501 201 HOH HOH . 
D 3 HOH A 2 502 202 HOH HOH . 
D 3 HOH A 3 503 203 HOH HOH . 
D 3 HOH A 4 504 204 HOH HOH . 
D 3 HOH A 5 505 205 HOH HOH . 
D 3 HOH A 6 506 206 HOH HOH . 
D 3 HOH A 7 507 207 HOH HOH . 
D 3 HOH A 8 508 208 HOH HOH . 
D 3 HOH A 9 509 209 HOH HOH . 
D 3 HOH A 10 510 210 HOH HOH . 
D 3 HOH A 11 511 211 HOH HOH . 
D 3 HOH A 12 512 212 HOH HOH . 
D 3 HOH A 13 513 213 HOH HOH . 
D 3 HOH A 14 514 214 HOH HOH . 
D 3 HOH A 15 515 215 HOH HOH . 
D 3 HOH A 16 516 216 HOH HOH . 
D 3 HOH A 17 517 217 HOH HOH . 
D 3 HOH A 18 518 218 HOH HOH . 
D 3 HOH A 19 519 219 HOH HOH . 
D 3 HOH A 20 520 220 HOH HOH . 
D 3 HOH A 21 521 221 HOH HOH . 
D 3 HOH A 22 522 222 HOH HOH . 
D 3 HOH A 23 523 223 HOH HOH . 
D 3 HOH A 24 524 224 HOH HOH . 
D 3 HOH A 25 525 225 HOH HOH . 
D 3 HOH A 26 526 226 HOH HOH . 
D 3 HOH A 27 527 227 HOH HOH . 
D 3 HOH A 28 528 228 HOH HOH . 
D 3 HOH A 29 529 229 HOH HOH . 
D 3 HOH A 30 530 230 HOH HOH . 
D 3 HOH A 31 531 231 HOH HOH . 
D 3 HOH A 32 532 232 HOH HOH . 
D 3 HOH A 33 533 233 HOH HOH . 
D 3 HOH A 34 534 234 HOH HOH . 
D 3 HOH A 35 535 235 HOH HOH . 
D 3 HOH A 36 536 236 HOH HOH . 
D 3 HOH A 37 537 237 HOH HOH . 
D 3 HOH A 38 538 238 HOH HOH . 
D 3 HOH A 39 539 239 HOH HOH . 
D 3 HOH A 40 540 240 HOH HOH . 
D 3 HOH A 41 541 241 HOH HOH . 
D 3 HOH A 42 542 242 HOH HOH . 
D 3 HOH A 43 543 243 HOH HOH . 
D 3 HOH A 44 544 244 HOH HOH . 
D 3 HOH A 45 545 245 HOH HOH . 
D 3 HOH A 46 546 246 HOH HOH . 
D 3 HOH A 47 547 247 HOH HOH . 
D 3 HOH A 48 548 248 HOH HOH . 
D 3 HOH A 49 549 249 HOH HOH . 
D 3 HOH A 50 550 250 HOH HOH . 
D 3 HOH A 51 551 251 HOH HOH . 
D 3 HOH A 52 552 252 HOH HOH . 
D 3 HOH A 53 553 253 HOH HOH . 
D 3 HOH A 54 554 254 HOH HOH . 
D 3 HOH A 55 555 255 HOH HOH . 
D 3 HOH A 56 556 256 HOH HOH . 
D 3 HOH A 57 557 257 HOH HOH . 
D 3 HOH A 58 558 258 HOH HOH . 
D 3 HOH A 59 559 259 HOH HOH . 
D 3 HOH A 60 560 260 HOH HOH . 
D 3 HOH A 61 561 261 HOH HOH . 
D 3 HOH A 62 562 262 HOH HOH . 
D 3 HOH A 63 563 263 HOH HOH . 
D 3 HOH A 64 564 264 HOH HOH . 
D 3 HOH A 65 565 265 HOH HOH . 
D 3 HOH A 66 566 266 HOH HOH . 
D 3 HOH A 67 567 267 HOH HOH . 
D 3 HOH A 68 568 268 HOH HOH . 
D 3 HOH A 69 569 269 HOH HOH . 
D 3 HOH A 70 570 270 HOH HOH . 
D 3 HOH A 71 571 271 HOH HOH . 
D 3 HOH A 72 572 272 HOH HOH . 
D 3 HOH A 73 573 273 HOH HOH . 
D 3 HOH A 74 574 274 HOH HOH . 
D 3 HOH A 75 575 275 HOH HOH . 
D 3 HOH A 76 576 276 HOH HOH . 
D 3 HOH A 77 577 277 HOH HOH . 
D 3 HOH A 78 578 278 HOH HOH . 
D 3 HOH A 79 579 279 HOH HOH . 
D 3 HOH A 80 580 280 HOH HOH . 
D 3 HOH A 81 581 281 HOH HOH . 
D 3 HOH A 82 582 282 HOH HOH . 
D 3 HOH A 83 583 283 HOH HOH . 
D 3 HOH A 84 584 284 HOH HOH . 
D 3 HOH A 85 585 285 HOH HOH . 
D 3 HOH A 86 586 286 HOH HOH . 
D 3 HOH A 87 587 287 HOH HOH . 
D 3 HOH A 88 588 288 HOH HOH . 
D 3 HOH A 89 589 289 HOH HOH . 
D 3 HOH A 90 590 290 HOH HOH . 
D 3 HOH A 91 591 291 HOH HOH . 
D 3 HOH A 92 592 292 HOH HOH . 
D 3 HOH A 93 593 293 HOH HOH . 
D 3 HOH A 94 594 294 HOH HOH . 
D 3 HOH A 95 595 295 HOH HOH . 
D 3 HOH A 96 596 296 HOH HOH . 
D 3 HOH A 97 597 297 HOH HOH . 
D 3 HOH A 98 598 298 HOH HOH . 
D 3 HOH A 99 599 299 HOH HOH . 
D 3 HOH A 100 600 300 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           SR 
_atom_site.label_atom_id         SR 
_atom_site.label_comp_id         SR 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -13.103 
_atom_site.Cartn_y               -0.102 
_atom_site.Cartn_z               6.745 
_atom_site.occupancy             0.25 
_atom_site.B_iso_or_equiv        6.08 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          SR 
_atom_site.auth_comp_id          SR 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#