data_4RC2 # _model_server_result.job_id Txw1MEcgp-wrq0ViYDQGjg _model_server_result.datetime_utc '2024-11-26 06:51:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4RC2 # _exptl.entry_id 4RC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-amino-5,8-dihydroxy-4-({2-[(2-hydroxyethyl)amino]ethyl}amino)anthracene-9,10-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RC2 _cell.length_a 97.734 _cell.length_b 97.734 _cell.length_c 81.247 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 236 A SER 260 1_555 A N SEP 237 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 237 A SEP 261 1_555 A N GLU 238 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C18 H19 N3 O5' _chem_comp.formula_weight 357.361 _chem_comp.id 3O8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-amino-5,8-dihydroxy-4-({2-[(2-hydroxyethyl)amino]ethyl}amino)anthracene-9,10-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAH 3O8 doub 1 n y CAG CAW 3O8 sing 2 n y CAH CAX 3O8 sing 3 n y CAW OAE 3O8 sing 4 n n CAW CBC 3O8 doub 5 n y CAX OAF 3O8 sing 6 n n CAX CBD 3O8 doub 7 n y CBC CBD 3O8 sing 8 n y CBC CBA 3O8 sing 9 n n CBD CBB 3O8 sing 10 n n OAB CBB 3O8 doub 11 n n OAA CBA 3O8 doub 12 n n CBB CBF 3O8 sing 13 n n CBA CBE 3O8 sing 14 n n CBF CBE 3O8 doub 15 n y CBF CAZ 3O8 sing 16 n y CBE CAY 3O8 sing 17 n y NAV CAZ 3O8 sing 18 n n CAZ CAJ 3O8 doub 19 n y CAY NAU 3O8 sing 20 n n CAY CAI 3O8 doub 21 n y NAU CAQ 3O8 sing 22 n n CAJ CAI 3O8 sing 23 n y CAQ CAO 3O8 sing 24 n n CAO NAS 3O8 sing 25 n n NAS CAM 3O8 sing 26 n n OAC CAK 3O8 sing 27 n n CAM CAK 3O8 sing 28 n n OAC H1 3O8 sing 29 n n CAK H2 3O8 sing 30 n n CAK H3 3O8 sing 31 n n CAM H4 3O8 sing 32 n n CAM H5 3O8 sing 33 n n NAS H6 3O8 sing 34 n n CAO H8 3O8 sing 35 n n CAO H9 3O8 sing 36 n n CAQ H10 3O8 sing 37 n n CAI H11 3O8 sing 38 n n CAJ H12 3O8 sing 39 n n NAV H15 3O8 sing 40 n n NAV H16 3O8 sing 41 n n OAE H17 3O8 sing 42 n n CAG H18 3O8 sing 43 n n CAH H19 3O8 sing 44 n n OAF H20 3O8 sing 45 n n CAQ H7 3O8 sing 46 n n NAU H21 3O8 sing 47 n n # _atom_sites.entry_id 4RC2 _atom_sites.fract_transf_matrix[1][1] 0.010232 _atom_sites.fract_transf_matrix[1][2] 0.005907 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 3O8 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 3O8 _pdbx_nonpoly_scheme.auth_mon_id MX6 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 3O8 . . . B 2 26.17 -37.88 7.521 1 52.88 ? OAC 3O8 401 A 1 HETATM 2 C CAK 3O8 . . . B 2 25.594 -39.002 8.174 1 67.75 ? CAK 3O8 401 A 1 HETATM 3 C CAM 3O8 . . . B 2 26.025 -40.371 7.615 1 67.57 ? CAM 3O8 401 A 1 HETATM 4 N NAS 3O8 . . . B 2 24.932 -41.218 7.043 1 72.24 ? NAS 3O8 401 A 1 HETATM 5 C CAO 3O8 . . . B 2 24.633 -40.994 5.588 1 70.59 ? CAO 3O8 401 A 1 HETATM 6 C CAQ 3O8 . . . B 2 23.778 -39.717 5.346 1 65.85 ? CAQ 3O8 401 A 1 HETATM 7 N NAU 3O8 . . . B 2 24.117 -38.89 4.134 1 64.27 ? NAU 3O8 401 A 1 HETATM 8 C CAY 3O8 . . . B 2 23.558 -37.54 3.924 1 51.34 ? CAY 3O8 401 A 1 HETATM 9 C CAI 3O8 . . . B 2 23.205 -36.815 5.023 1 56.65 ? CAI 3O8 401 A 1 HETATM 10 C CBE 3O8 . . . B 2 23.295 -36.927 2.63 1 42.49 ? CBE 3O8 401 A 1 HETATM 11 C CAJ 3O8 . . . B 2 22.659 -35.578 4.931 1 57.07 ? CAJ 3O8 401 A 1 HETATM 12 C CBA 3O8 . . . B 2 23.613 -37.585 1.317 1 45.25 ? CBA 3O8 401 A 1 HETATM 13 O OAA 3O8 . . . B 2 24.169 -38.81 1.261 1 47.36 ? OAA 3O8 401 A 1 HETATM 14 C CBF 3O8 . . . B 2 22.714 -35.614 2.572 1 41.07 ? CBF 3O8 401 A 1 HETATM 15 C CBC 3O8 . . . B 2 23.329 -36.894 0.032 1 36.94 ? CBC 3O8 401 A 1 HETATM 16 C CAZ 3O8 . . . B 2 22.399 -34.918 3.758 1 43.67 ? CAZ 3O8 401 A 1 HETATM 17 C CBB 3O8 . . . B 2 22.472 -34.945 1.298 1 34.14 ? CBB 3O8 401 A 1 HETATM 18 O OAB 3O8 . . . B 2 21.957 -33.672 1.238 1 42.74 ? OAB 3O8 401 A 1 HETATM 19 C CAW 3O8 . . . B 2 23.615 -37.46 -1.161 1 35.07 ? CAW 3O8 401 A 1 HETATM 20 N NAV 3O8 . . . B 2 21.868 -33.596 3.746 1 51.14 ? NAV 3O8 401 A 1 HETATM 21 O OAE 3O8 . . . B 2 24.188 -38.695 -1.097 1 41.74 ? OAE 3O8 401 A 1 HETATM 22 C CAG 3O8 . . . B 2 23.404 -36.775 -2.298 1 32.94 ? CAG 3O8 401 A 1 HETATM 23 C CAH 3O8 . . . B 2 22.902 -35.55 -2.28 1 35.3 ? CAH 3O8 401 A 1 HETATM 24 C CAX 3O8 . . . B 2 22.596 -34.943 -1.12 1 33.72 ? CAX 3O8 401 A 1 HETATM 25 O OAF 3O8 . . . B 2 22.06 -33.671 -0.918 1 39.1 ? OAF 3O8 401 A 1 HETATM 26 C CBD 3O8 . . . B 2 22.819 -35.619 0.048 1 36.38 ? CBD 3O8 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 427 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #