data_4RC3 # _model_server_result.job_id ahYkYHuayajxZQcDhiiVXA _model_server_result.datetime_utc '2024-11-16 09:34:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4RC3 # _exptl.entry_id 4RC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.45 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-dihydroxy-5,8-bis{[2-(2-hydroxyethoxy)ethyl]amino}anthracene-9,10-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RC3 _cell.length_a 97.867 _cell.length_b 97.867 _cell.length_c 80.832 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 236 A SER 260 1_555 A N SEP 237 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 237 A SEP 261 1_555 A N GLU 238 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C22 H26 N2 O8' _chem_comp.formula_weight 446.45 _chem_comp.id 3OA _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-dihydroxy-5,8-bis{[2-(2-hydroxyethoxy)ethyl]amino}anthracene-9,10-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAC CAK 3OA sing 1 n n OAD CAL 3OA sing 2 n n CAL CAN 3OA sing 3 n n CAK CAM 3OA sing 4 n n CAM O1 3OA sing 5 n n CAN O2 3OA sing 6 n n O1 CAO 3OA sing 7 n n O2 CAP 3OA sing 8 n n CAO CAQ 3OA sing 9 n n CAP CAR 3OA sing 10 n n CAI CAJ 3OA doub 11 n y CAI CAY 3OA sing 12 n y CAQ NAU 3OA sing 13 n n CAJ CAZ 3OA sing 14 n y CAR NAV 3OA sing 15 n n CAY NAU 3OA sing 16 n n CAY CBE 3OA doub 17 n y CAZ NAV 3OA sing 18 n n CAZ CBF 3OA doub 19 n y CBE CBF 3OA sing 20 n y CBE CBA 3OA sing 21 n n CBF CBB 3OA sing 22 n n OAA CBA 3OA doub 23 n n CBA CBC 3OA sing 24 n n CBB OAB 3OA doub 25 n n CBB CBD 3OA sing 26 n n CBC CBD 3OA doub 27 n y CBC CAW 3OA sing 28 n y CBD CAX 3OA sing 29 n y OAE CAW 3OA sing 30 n n CAW CAG 3OA doub 31 n y OAF CAX 3OA sing 32 n n CAX CAH 3OA doub 33 n y CAG CAH 3OA sing 34 n y OAC H1 3OA sing 35 n n CAK H2 3OA sing 36 n n CAK H3 3OA sing 37 n n CAM H4 3OA sing 38 n n CAM H5 3OA sing 39 n n CAO H6 3OA sing 40 n n CAO H7 3OA sing 41 n n CAQ H8 3OA sing 42 n n CAQ H9 3OA sing 43 n n NAU H10 3OA sing 44 n n CAI H11 3OA sing 45 n n CAJ H12 3OA sing 46 n n OAE H14 3OA sing 47 n n CAG H15 3OA sing 48 n n CAH H16 3OA sing 49 n n OAF H17 3OA sing 50 n n NAV H19 3OA sing 51 n n CAR H20 3OA sing 52 n n CAR H21 3OA sing 53 n n CAP H22 3OA sing 54 n n CAP H23 3OA sing 55 n n CAN H24 3OA sing 56 n n CAN H25 3OA sing 57 n n CAL H26 3OA sing 58 n n CAL H27 3OA sing 59 n n OAD H28 3OA sing 60 n n # _atom_sites.entry_id 4RC3 _atom_sites.fract_transf_matrix[1][1] 0.010218 _atom_sites.fract_transf_matrix[1][2] 0.005899 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 3OA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 3OA _pdbx_nonpoly_scheme.auth_mon_id MX7 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 3OA . . . B 2 -26.909 -38.618 -10.971 1 112.3 ? OAC 3OA 401 A 1 HETATM 2 C CAK 3OA . . . B 2 -27.094 -38.299 -9.576 1 97.04 ? CAK 3OA 401 A 1 HETATM 3 C CAM 3OA . . . B 2 -25.841 -37.789 -8.917 1 87.06 ? CAM 3OA 401 A 1 HETATM 4 O O1 3OA . . . B 2 -25.2 -38.951 -8.388 1 97.16 ? O1 3OA 401 A 1 HETATM 5 C CAO 3OA . . . B 2 -25.427 -39.232 -7.019 1 94.1 ? CAO 3OA 401 A 1 HETATM 6 C CAQ 3OA . . . B 2 -24.089 -39.565 -6.412 1 84.22 ? CAQ 3OA 401 A 1 HETATM 7 N NAU 3OA . . . B 2 -23.946 -38.671 -5.255 1 86.35 ? NAU 3OA 401 A 1 HETATM 8 C CAY 3OA . . . B 2 -23.473 -37.391 -5.265 1 71.69 ? CAY 3OA 401 A 1 HETATM 9 C CAI 3OA . . . B 2 -23.178 -36.652 -6.429 1 77.98 ? CAI 3OA 401 A 1 HETATM 10 C CAJ 3OA . . . B 2 -22.65 -35.34 -6.327 1 73.52 ? CAJ 3OA 401 A 1 HETATM 11 C CBE 3OA . . . B 2 -23.232 -36.812 -3.995 1 57.71 ? CBE 3OA 401 A 1 HETATM 12 C CBA 3OA . . . B 2 -23.509 -37.526 -2.786 1 67.4 ? CBA 3OA 401 A 1 HETATM 13 O OAA 3OA . . . B 2 -24.013 -38.825 -2.846 1 57.72 ? OAA 3OA 401 A 1 HETATM 14 C CBC 3OA . . . B 2 -23.292 -36.978 -1.522 1 52.11 ? CBC 3OA 401 A 1 HETATM 15 C CAW 3OA . . . B 2 -23.594 -37.639 -0.347 1 51.94 ? CAW 3OA 401 A 1 HETATM 16 O OAE 3OA . . . B 2 -24.108 -38.904 -0.404 1 57.14 ? OAE 3OA 401 A 1 HETATM 17 C CAG 3OA . . . B 2 -23.386 -37.043 0.867 1 47.67 ? CAG 3OA 401 A 1 HETATM 18 C CAH 3OA . . . B 2 -22.905 -35.751 0.903 1 46.3 ? CAH 3OA 401 A 1 HETATM 19 C CAX 3OA . . . B 2 -22.643 -35.105 -0.264 1 49.54 ? CAX 3OA 401 A 1 HETATM 20 O OAF 3OA . . . B 2 -22.169 -33.828 -0.332 1 52.03 ? OAF 3OA 401 A 1 HETATM 21 C CBD 3OA . . . B 2 -22.814 -35.707 -1.478 1 51.09 ? CBD 3OA 401 A 1 HETATM 22 C CBB 3OA . . . B 2 -22.505 -34.981 -2.634 1 49.4 ? CBB 3OA 401 A 1 HETATM 23 O OAB 3OA . . . B 2 -22.017 -33.656 -2.481 1 55.07 ? OAB 3OA 401 A 1 HETATM 24 C CBF 3OA . . . B 2 -22.708 -35.494 -3.908 1 56.79 ? CBF 3OA 401 A 1 HETATM 25 C CAZ 3OA . . . B 2 -22.435 -34.732 -5.073 1 66.77 ? CAZ 3OA 401 A 1 HETATM 26 N NAV 3OA . . . B 2 -21.97 -33.463 -4.883 1 81.19 ? NAV 3OA 401 A 1 HETATM 27 C CAR 3OA . . . B 2 -21.977 -32.329 -5.865 1 105.6 ? CAR 3OA 401 A 1 HETATM 28 C CAP 3OA . . . B 2 -23.077 -32.207 -7.001 1 114.05 ? CAP 3OA 401 A 1 HETATM 29 O O2 3OA . . . B 2 -22.515 -31.725 -8.304 1 127.62 ? O2 3OA 401 A 1 HETATM 30 C CAN 3OA . . . B 2 -21.148 -32.131 -8.713 1 126.05 ? CAN 3OA 401 A 1 HETATM 31 C CAL 3OA . . . B 2 -20.905 -32.063 -10.217 1 118.28 ? CAL 3OA 401 A 1 HETATM 32 O OAD 3OA . . . B 2 -19.823 -32.997 -10.42 1 111.74 ? OAD 3OA 401 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #