data_4RC7 # _model_server_result.job_id freCBDbRX3_lzDaZMr9FSg _model_server_result.datetime_utc '2024-12-01 22:54:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1003}' # _entry.id 4RC7 # _exptl.entry_id 4RC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RC7 _cell.length_a 62.014 _cell.length_b 62.109 _cell.length_c 125.003 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 22 A GLU 32 1_555 D FE FE2 . A FE2 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 A OE1 GLU 50 A GLU 60 1_555 D FE FE2 . A FE2 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc3 A OE2 GLU 50 A GLU 60 1_555 E FE FE2 . A FE2 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc4 A ND1 HIS 53 A HIS 63 1_555 D FE FE2 . A FE2 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc5 A OE2 GLU 105 A GLU 115 1_555 E FE FE2 . A FE2 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc6 A OE1 GLU 105 A GLU 115 1_555 E FE FE2 . A FE2 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc7 A ND1 HIS 137 A HIS 147 1_555 E FE FE2 . A FE2 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc8 C O1 PL3 . A PL3 1001 1_555 E FE FE2 . A FE2 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc9 B OE1 GLU 23 B GLU 32 1_555 G FE FE2 . B FE2 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc10 B OE2 GLU 23 B GLU 32 1_555 G FE FE2 . B FE2 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc11 B OE1 GLU 51 B GLU 60 1_555 G FE FE2 . B FE2 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 B OE2 GLU 51 B GLU 60 1_555 H FE FE2 . B FE2 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc13 B OE1 GLU 106 B GLU 115 1_555 H FE FE2 . B FE2 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc14 F O1 PL3 . B PL3 1001 1_555 H FE FE2 . B FE2 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc15 G FE FE2 . B FE2 1002 1_555 J O HOH . B HOH 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc16 H FE FE2 . B FE2 1003 1_555 J O HOH . B HOH 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'Fe 2' _chem_comp.formula_weight 55.845 _chem_comp.id FE2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RC7 _atom_sites.fract_transf_matrix[1][1] 0.016125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PL3 A 1 1001 1001 PL3 YAH . D 4 FE2 A 1 1002 3 FE2 FE . E 4 FE2 A 1 1003 4 FE2 FE . F 3 PL3 B 1 1001 1001 PL3 YAH . G 4 FE2 B 1 1002 1 FE2 FE . H 4 FE2 B 1 1003 2 FE2 FE . I 5 HOH A 1 1101 2 HOH HOH . I 5 HOH A 2 1102 6 HOH HOH . I 5 HOH A 3 1103 7 HOH HOH . I 5 HOH A 4 1104 8 HOH HOH . I 5 HOH A 5 1105 9 HOH HOH . I 5 HOH A 6 1106 13 HOH HOH . I 5 HOH A 7 1107 16 HOH HOH . I 5 HOH A 8 1108 17 HOH HOH . I 5 HOH A 9 1109 19 HOH HOH . I 5 HOH A 10 1110 20 HOH HOH . I 5 HOH A 11 1111 21 HOH HOH . I 5 HOH A 12 1112 23 HOH HOH . I 5 HOH A 13 1113 24 HOH HOH . I 5 HOH A 14 1114 26 HOH HOH . I 5 HOH A 15 1115 27 HOH HOH . I 5 HOH A 16 1116 30 HOH HOH . I 5 HOH A 17 1117 34 HOH HOH . I 5 HOH A 18 1118 35 HOH HOH . I 5 HOH A 19 1119 36 HOH HOH . I 5 HOH A 20 1120 39 HOH HOH . I 5 HOH A 21 1121 41 HOH HOH . I 5 HOH A 22 1122 44 HOH HOH . I 5 HOH A 23 1123 46 HOH HOH . I 5 HOH A 24 1124 47 HOH HOH . I 5 HOH A 25 1125 49 HOH HOH . I 5 HOH A 26 1126 51 HOH HOH . I 5 HOH A 27 1127 56 HOH HOH . I 5 HOH A 28 1128 57 HOH HOH . I 5 HOH A 29 1129 62 HOH HOH . I 5 HOH A 30 1130 63 HOH HOH . I 5 HOH A 31 1131 66 HOH HOH . I 5 HOH A 32 1132 67 HOH HOH . I 5 HOH A 33 1133 68 HOH HOH . I 5 HOH A 34 1134 69 HOH HOH . I 5 HOH A 35 1135 70 HOH HOH . I 5 HOH A 36 1136 71 HOH HOH . I 5 HOH A 37 1137 72 HOH HOH . I 5 HOH A 38 1138 73 HOH HOH . I 5 HOH A 39 1139 74 HOH HOH . I 5 HOH A 40 1140 75 HOH HOH . I 5 HOH A 41 1141 77 HOH HOH . I 5 HOH A 42 1142 79 HOH HOH . I 5 HOH A 43 1143 80 HOH HOH . I 5 HOH A 44 1144 81 HOH HOH . I 5 HOH A 45 1145 83 HOH HOH . I 5 HOH A 46 1146 86 HOH HOH . I 5 HOH A 47 1147 87 HOH HOH . I 5 HOH A 48 1148 88 HOH HOH . I 5 HOH A 49 1149 91 HOH HOH . I 5 HOH A 50 1150 93 HOH HOH . I 5 HOH A 51 1151 96 HOH HOH . I 5 HOH A 52 1152 97 HOH HOH . I 5 HOH A 53 1153 98 HOH HOH . I 5 HOH A 54 1154 99 HOH HOH . I 5 HOH A 55 1155 100 HOH HOH . I 5 HOH A 56 1156 101 HOH HOH . I 5 HOH A 57 1157 102 HOH HOH . I 5 HOH A 58 1158 104 HOH HOH . I 5 HOH A 59 1159 105 HOH HOH . I 5 HOH A 60 1160 106 HOH HOH . I 5 HOH A 61 1161 107 HOH HOH . I 5 HOH A 62 1162 108 HOH HOH . I 5 HOH A 63 1163 109 HOH HOH . I 5 HOH A 64 1164 110 HOH HOH . I 5 HOH A 65 1165 112 HOH HOH . I 5 HOH A 66 1166 113 HOH HOH . I 5 HOH A 67 1167 116 HOH HOH . I 5 HOH A 68 1168 117 HOH HOH . I 5 HOH A 69 1169 118 HOH HOH . I 5 HOH A 70 1170 119 HOH HOH . I 5 HOH A 71 1171 120 HOH HOH . I 5 HOH A 72 1172 122 HOH HOH . I 5 HOH A 73 1173 127 HOH HOH . I 5 HOH A 74 1174 128 HOH HOH . I 5 HOH A 75 1175 135 HOH HOH . I 5 HOH A 76 1176 138 HOH HOH . I 5 HOH A 77 1177 139 HOH HOH . I 5 HOH A 78 1178 140 HOH HOH . I 5 HOH A 79 1179 142 HOH HOH . I 5 HOH A 80 1180 144 HOH HOH . I 5 HOH A 81 1181 146 HOH HOH . I 5 HOH A 82 1182 147 HOH HOH . I 5 HOH A 83 1183 148 HOH HOH . I 5 HOH A 84 1184 149 HOH HOH . I 5 HOH A 85 1185 152 HOH HOH . I 5 HOH A 86 1186 153 HOH HOH . I 5 HOH A 87 1187 154 HOH HOH . I 5 HOH A 88 1188 156 HOH HOH . I 5 HOH A 89 1189 157 HOH HOH . I 5 HOH A 90 1190 158 HOH HOH . I 5 HOH A 91 1191 159 HOH HOH . I 5 HOH A 92 1192 161 HOH HOH . I 5 HOH A 93 1193 164 HOH HOH . I 5 HOH A 94 1194 169 HOH HOH . I 5 HOH A 95 1195 171 HOH HOH . J 5 HOH B 1 1101 3 HOH HOH . J 5 HOH B 2 1102 4 HOH HOH . J 5 HOH B 3 1103 5 HOH HOH . J 5 HOH B 4 1104 11 HOH HOH . J 5 HOH B 5 1105 12 HOH HOH . J 5 HOH B 6 1106 14 HOH HOH . J 5 HOH B 7 1107 15 HOH HOH . J 5 HOH B 8 1108 18 HOH HOH . J 5 HOH B 9 1109 22 HOH HOH . J 5 HOH B 10 1110 28 HOH HOH . J 5 HOH B 11 1111 29 HOH HOH . J 5 HOH B 12 1112 32 HOH HOH . J 5 HOH B 13 1113 33 HOH HOH . J 5 HOH B 14 1114 37 HOH HOH . J 5 HOH B 15 1115 38 HOH HOH . J 5 HOH B 16 1116 40 HOH HOH . J 5 HOH B 17 1117 43 HOH HOH . J 5 HOH B 18 1118 45 HOH HOH . J 5 HOH B 19 1119 48 HOH HOH . J 5 HOH B 20 1120 50 HOH HOH . J 5 HOH B 21 1121 53 HOH HOH . J 5 HOH B 22 1122 54 HOH HOH . J 5 HOH B 23 1123 55 HOH HOH . J 5 HOH B 24 1124 58 HOH HOH . J 5 HOH B 25 1125 59 HOH HOH . J 5 HOH B 26 1126 60 HOH HOH . J 5 HOH B 27 1127 61 HOH HOH . J 5 HOH B 28 1128 64 HOH HOH . J 5 HOH B 29 1129 65 HOH HOH . J 5 HOH B 30 1130 76 HOH HOH . J 5 HOH B 31 1131 82 HOH HOH . J 5 HOH B 32 1132 84 HOH HOH . J 5 HOH B 33 1133 85 HOH HOH . J 5 HOH B 34 1134 89 HOH HOH . J 5 HOH B 35 1135 90 HOH HOH . J 5 HOH B 36 1136 92 HOH HOH . J 5 HOH B 37 1137 94 HOH HOH . J 5 HOH B 38 1138 95 HOH HOH . J 5 HOH B 39 1139 103 HOH HOH . J 5 HOH B 40 1140 114 HOH HOH . J 5 HOH B 41 1141 115 HOH HOH . J 5 HOH B 42 1142 121 HOH HOH . J 5 HOH B 43 1143 123 HOH HOH . J 5 HOH B 44 1144 125 HOH HOH . J 5 HOH B 45 1145 129 HOH HOH . J 5 HOH B 46 1146 130 HOH HOH . J 5 HOH B 47 1147 132 HOH HOH . J 5 HOH B 48 1148 134 HOH HOH . J 5 HOH B 49 1149 136 HOH HOH . J 5 HOH B 50 1150 137 HOH HOH . J 5 HOH B 51 1151 141 HOH HOH . J 5 HOH B 52 1152 143 HOH HOH . J 5 HOH B 53 1153 145 HOH HOH . J 5 HOH B 54 1154 150 HOH HOH . J 5 HOH B 55 1155 151 HOH HOH . J 5 HOH B 56 1156 155 HOH HOH . J 5 HOH B 57 1157 160 HOH HOH . J 5 HOH B 58 1158 162 HOH HOH . J 5 HOH B 59 1159 163 HOH HOH . J 5 HOH B 60 1160 165 HOH HOH . J 5 HOH B 61 1161 166 HOH HOH . J 5 HOH B 62 1162 168 HOH HOH . J 5 HOH B 63 1163 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE2 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.47 _atom_site.Cartn_y -17.859 _atom_site.Cartn_z 8.652 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 61.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE2 _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #