data_4RCH
#
_model_server_result.job_id            RxRoSZrfg6ihxubiZV57MA 
_model_server_result.datetime_utc      '2025-01-02 19:28:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rch 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
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_entry.id    4RCH 
#
_exptl.entry_id    4RCH 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              381.451 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-{3-[(2-ethylpyridin-3-yl)oxy]-5-(pyridin-2-ylsulfanyl)pyridin-2-yl}-3-methylurea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4RCH 
_cell.length_a            80.116 
_cell.length_b            80.116 
_cell.length_c            321.807 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4RCH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H19 N5 O2 S' 
_chem_comp.formula_weight    381.451 
_chem_comp.id                3LZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-{3-[(2-ethylpyridin-3-yl)oxy]-5-(pyridin-2-ylsulfanyl)pyridin-2-yl}-3-methylurea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O25 C24 3LZ doub 1 n n 
C24 N7 3LZ sing 2 n n 
C24 N26 3LZ sing 3 n n 
C27 N26 3LZ sing 4 n n 
N7 C4 3LZ sing 5 n n 
C19 N20 3LZ doub 6 n y 
C19 C18 3LZ sing 7 n y 
N20 C21 3LZ sing 8 n y 
C18 C17 3LZ doub 9 n y 
C22 C21 3LZ sing 10 n n 
C22 C23 3LZ sing 11 n n 
C21 C9 3LZ doub 12 n y 
C17 C9 3LZ sing 13 n y 
C9 O8 3LZ sing 14 n n 
O8 C3 3LZ sing 15 n n 
C4 C3 3LZ doub 16 n y 
C4 N5 3LZ sing 17 n y 
C3 C2 3LZ sing 18 n y 
N5 C6 3LZ doub 19 n y 
C2 C1 3LZ doub 20 n y 
C6 C1 3LZ sing 21 n y 
C1 S10 3LZ sing 22 n n 
C13 C12 3LZ doub 23 n y 
C13 C14 3LZ sing 24 n y 
C12 C11 3LZ sing 25 n y 
C14 C15 3LZ doub 26 n y 
C11 S10 3LZ sing 27 n n 
C11 N16 3LZ doub 28 n y 
C15 N16 3LZ sing 29 n y 
C18 H1 3LZ sing 30 n n 
C14 H2 3LZ sing 31 n n 
C13 H3 3LZ sing 32 n n 
C12 H4 3LZ sing 33 n n 
C17 H5 3LZ sing 34 n n 
C15 H6 3LZ sing 35 n n 
C22 H7 3LZ sing 36 n n 
C22 H8 3LZ sing 37 n n 
C6 H9 3LZ sing 38 n n 
C19 H10 3LZ sing 39 n n 
C2 H11 3LZ sing 40 n n 
N7 H12 3LZ sing 41 n n 
C23 H13 3LZ sing 42 n n 
C23 H14 3LZ sing 43 n n 
C23 H15 3LZ sing 44 n n 
N26 H16 3LZ sing 45 n n 
C27 H17 3LZ sing 46 n n 
C27 H18 3LZ sing 47 n n 
C27 H19 3LZ sing 48 n n 
#
_atom_sites.entry_id                     4RCH 
_atom_sites.fract_transf_matrix[1][1]    0.012482 
_atom_sites.fract_transf_matrix[1][2]    0.007206 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014413 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003107 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLC A 1 501 1 GLC GLC . 
C 3 3LZ A 1 502 1 3LZ SM1 . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 2 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 7 HOH HOH . 
D 4 HOH A 8 608 8 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 10 HOH HOH . 
D 4 HOH A 11 611 11 HOH HOH . 
D 4 HOH A 12 612 12 HOH HOH . 
D 4 HOH A 13 613 13 HOH HOH . 
D 4 HOH A 14 614 14 HOH HOH . 
D 4 HOH A 15 615 15 HOH HOH . 
D 4 HOH A 16 616 16 HOH HOH . 
D 4 HOH A 17 617 17 HOH HOH . 
D 4 HOH A 18 618 18 HOH HOH . 
D 4 HOH A 19 619 19 HOH HOH . 
D 4 HOH A 20 620 20 HOH HOH . 
D 4 HOH A 21 621 21 HOH HOH . 
D 4 HOH A 22 622 22 HOH HOH . 
D 4 HOH A 23 623 23 HOH HOH . 
D 4 HOH A 24 624 24 HOH HOH . 
D 4 HOH A 25 625 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 3LZ . . . C 3 44.687 15.193 61.66 1 54.22 ? C18 3LZ 502 A 1 
HETATM 2 N N5 3LZ . . . C 3 38.811 17.338 63.646 1 46.51 ? N5 3LZ 502 A 1 
HETATM 3 C C14 3LZ . . . C 3 45.451 17.611 66.432 1 70.13 ? C14 3LZ 502 A 1 
HETATM 4 C C13 3LZ . . . C 3 44.617 17.868 65.323 1 67.21 ? C13 3LZ 502 A 1 
HETATM 5 C C12 3LZ . . . C 3 43.245 17.576 65.43 1 60.25 ? C12 3LZ 502 A 1 
HETATM 6 C C17 3LZ . . . C 3 43.34 15.59 61.834 1 54.29 ? C17 3LZ 502 A 1 
HETATM 7 C C15 3LZ . . . C 3 44.868 17.068 67.6 1 73.1 ? C15 3LZ 502 A 1 
HETATM 8 C C11 3LZ . . . C 3 42.751 17.02 66.628 1 56.56 ? C11 3LZ 502 A 1 
HETATM 9 C C22 3LZ . . . C 3 41.677 12.124 61.683 1 51.93 ? C22 3LZ 502 A 1 
HETATM 10 C C6 3LZ . . . C 3 39.34 17.329 64.891 1 49.8 ? C6 3LZ 502 A 1 
HETATM 11 C C1 3LZ . . . C 3 40.45 16.539 65.245 1 50.08 ? C1 3LZ 502 A 1 
HETATM 12 C C4 3LZ . . . C 3 39.389 16.546 62.724 1 46.79 ? C4 3LZ 502 A 1 
HETATM 13 C C19 3LZ . . . C 3 44.959 13.818 61.508 1 50.31 ? C19 3LZ 502 A 1 
HETATM 14 C C21 3LZ . . . C 3 42.707 13.248 61.689 1 52.04 ? C21 3LZ 502 A 1 
HETATM 15 C C2 3LZ . . . C 3 41.051 15.708 64.282 1 45.48 ? C2 3LZ 502 A 1 
HETATM 16 C C3 3LZ . . . C 3 40.506 15.728 62.99 1 47.34 ? C3 3LZ 502 A 1 
HETATM 17 N N7 3LZ . . . C 3 38.927 16.519 61.391 1 50.74 ? N7 3LZ 502 A 1 
HETATM 18 O O8 3LZ . . . C 3 41.014 14.931 62.001 1 49.98 ? O8 3LZ 502 A 1 
HETATM 19 C C9 3LZ . . . C 3 42.336 14.6 61.863 1 53.11 ? C9 3LZ 502 A 1 
HETATM 20 S S10 3LZ . . . C 3 41.049 16.602 66.884 1 51.51 ? S10 3LZ 502 A 1 
HETATM 21 N N16 3LZ . . . C 3 43.545 16.782 67.698 1 67.74 ? N16 3LZ 502 A 1 
HETATM 22 N N20 3LZ . . . C 3 43.994 12.873 61.519 1 50.79 ? N20 3LZ 502 A 1 
HETATM 23 C C23 3LZ . . . C 3 41.767 11.165 62.885 1 50.24 ? C23 3LZ 502 A 1 
HETATM 24 C C24 3LZ . . . C 3 38.03 17.251 60.726 1 50.25 ? C24 3LZ 502 A 1 
HETATM 25 O O25 3LZ . . . C 3 37.8 17.069 59.533 1 56.89 ? O25 3LZ 502 A 1 
HETATM 26 N N26 3LZ . . . C 3 37.36 18.168 61.418 1 51.75 ? N26 3LZ 502 A 1 
HETATM 27 C C27 3LZ . . . C 3 36.154 18.818 60.896 1 49.7 ? C27 3LZ 502 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           27 
#