data_4RCV # _model_server_result.job_id cBJ5gnA8qPI4qZD1vyFMkA _model_server_result.datetime_utc '2024-11-25 15:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rcv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4RCV # _exptl.entry_id 4RCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.73 _cell.angle_gamma 90 _cell.entry_id 4RCV _cell.length_a 67.37 _cell.length_b 64.378 _cell.length_c 85.741 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 166 A ASP 151 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A OE2 GLU 168 A GLU 153 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 A OE2 GLU 237 A GLU 222 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 C MN MN . A MN 401 1_555 E O5 DE2 . A DE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc5 C MN MN . A MN 401 1_555 E O3 DE2 . A DE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 C MN MN . A MN 401 1_555 E O2 DE2 . A DE2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc7 B OD1 ASP 166 B ASP 151 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 B OE2 GLU 168 B GLU 153 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc9 B OE2 GLU 237 B GLU 222 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RCV _atom_sites.fract_transf_matrix[1][1] 0.014843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003082 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 401 1 MN MN . D 3 NDP A 1 402 1 NDP NDP . E 4 DE2 A 1 403 1 DE2 DE2 . F 5 PO3 A 1 404 1 PO3 PO3 . G 2 MN B 1 401 2 MN MN . H 3 NDP B 1 402 2 NDP NDP . I 5 PO3 B 1 403 2 PO3 PO3 . J 6 HOH A 1 501 1 HOH HOH . J 6 HOH A 2 502 2 HOH HOH . J 6 HOH A 3 503 3 HOH HOH . J 6 HOH A 4 504 4 HOH HOH . J 6 HOH A 5 505 5 HOH HOH . J 6 HOH A 6 506 6 HOH HOH . J 6 HOH A 7 507 7 HOH HOH . J 6 HOH A 8 508 8 HOH HOH . J 6 HOH A 9 509 9 HOH HOH . J 6 HOH A 10 510 10 HOH HOH . J 6 HOH A 11 511 11 HOH HOH . J 6 HOH A 12 512 12 HOH HOH . J 6 HOH A 13 513 13 HOH HOH . J 6 HOH A 14 514 14 HOH HOH . J 6 HOH A 15 515 15 HOH HOH . J 6 HOH A 16 516 16 HOH HOH . J 6 HOH A 17 517 17 HOH HOH . J 6 HOH A 18 518 18 HOH HOH . J 6 HOH A 19 519 19 HOH HOH . J 6 HOH A 20 520 20 HOH HOH . J 6 HOH A 21 521 21 HOH HOH . J 6 HOH A 22 522 22 HOH HOH . J 6 HOH A 23 523 23 HOH HOH . J 6 HOH A 24 524 24 HOH HOH . J 6 HOH A 25 525 25 HOH HOH . J 6 HOH A 26 526 26 HOH HOH . J 6 HOH A 27 527 27 HOH HOH . J 6 HOH A 28 528 28 HOH HOH . J 6 HOH A 29 529 29 HOH HOH . J 6 HOH A 30 530 30 HOH HOH . J 6 HOH A 31 531 31 HOH HOH . J 6 HOH A 32 532 32 HOH HOH . J 6 HOH A 33 533 33 HOH HOH . J 6 HOH A 34 534 34 HOH HOH . J 6 HOH A 35 535 35 HOH HOH . J 6 HOH A 36 536 36 HOH HOH . J 6 HOH A 37 537 37 HOH HOH . J 6 HOH A 38 538 38 HOH HOH . J 6 HOH A 39 539 39 HOH HOH . J 6 HOH A 40 540 40 HOH HOH . J 6 HOH A 41 541 41 HOH HOH . J 6 HOH A 42 542 42 HOH HOH . J 6 HOH A 43 543 43 HOH HOH . J 6 HOH A 44 544 44 HOH HOH . J 6 HOH A 45 545 45 HOH HOH . J 6 HOH A 46 546 46 HOH HOH . J 6 HOH A 47 547 47 HOH HOH . J 6 HOH A 48 548 48 HOH HOH . J 6 HOH A 49 549 49 HOH HOH . J 6 HOH A 50 550 52 HOH HOH . J 6 HOH A 51 551 55 HOH HOH . J 6 HOH A 52 552 56 HOH HOH . J 6 HOH A 53 553 57 HOH HOH . J 6 HOH A 54 554 59 HOH HOH . J 6 HOH A 55 555 60 HOH HOH . J 6 HOH A 56 556 62 HOH HOH . J 6 HOH A 57 557 63 HOH HOH . J 6 HOH A 58 558 64 HOH HOH . J 6 HOH A 59 559 65 HOH HOH . J 6 HOH A 60 560 66 HOH HOH . J 6 HOH A 61 561 67 HOH HOH . J 6 HOH A 62 562 98 HOH HOH . J 6 HOH A 63 563 99 HOH HOH . J 6 HOH A 64 564 100 HOH HOH . J 6 HOH A 65 565 101 HOH HOH . J 6 HOH A 66 566 103 HOH HOH . J 6 HOH A 67 567 104 HOH HOH . J 6 HOH A 68 568 105 HOH HOH . J 6 HOH A 69 569 106 HOH HOH . J 6 HOH A 70 570 108 HOH HOH . J 6 HOH A 71 571 109 HOH HOH . J 6 HOH A 72 572 110 HOH HOH . J 6 HOH A 73 573 123 HOH HOH . J 6 HOH A 74 574 124 HOH HOH . J 6 HOH A 75 575 125 HOH HOH . J 6 HOH A 76 576 126 HOH HOH . J 6 HOH A 77 577 127 HOH HOH . J 6 HOH A 78 578 129 HOH HOH . J 6 HOH A 79 579 130 HOH HOH . J 6 HOH A 80 580 131 HOH HOH . K 6 HOH B 1 501 50 HOH HOH . K 6 HOH B 2 502 51 HOH HOH . K 6 HOH B 3 503 53 HOH HOH . K 6 HOH B 4 504 54 HOH HOH . K 6 HOH B 5 505 58 HOH HOH . K 6 HOH B 6 506 61 HOH HOH . K 6 HOH B 7 507 68 HOH HOH . K 6 HOH B 8 508 69 HOH HOH . K 6 HOH B 9 509 70 HOH HOH . K 6 HOH B 10 510 71 HOH HOH . K 6 HOH B 11 511 72 HOH HOH . K 6 HOH B 12 512 73 HOH HOH . K 6 HOH B 13 513 74 HOH HOH . K 6 HOH B 14 514 75 HOH HOH . K 6 HOH B 15 515 76 HOH HOH . K 6 HOH B 16 516 77 HOH HOH . K 6 HOH B 17 517 78 HOH HOH . K 6 HOH B 18 518 79 HOH HOH . K 6 HOH B 19 519 80 HOH HOH . K 6 HOH B 20 520 81 HOH HOH . K 6 HOH B 21 521 82 HOH HOH . K 6 HOH B 22 522 83 HOH HOH . K 6 HOH B 23 523 84 HOH HOH . K 6 HOH B 24 524 85 HOH HOH . K 6 HOH B 25 525 86 HOH HOH . K 6 HOH B 26 526 87 HOH HOH . K 6 HOH B 27 527 88 HOH HOH . K 6 HOH B 28 528 89 HOH HOH . K 6 HOH B 29 529 90 HOH HOH . K 6 HOH B 30 530 91 HOH HOH . K 6 HOH B 31 531 92 HOH HOH . K 6 HOH B 32 532 93 HOH HOH . K 6 HOH B 33 533 94 HOH HOH . K 6 HOH B 34 534 95 HOH HOH . K 6 HOH B 35 535 96 HOH HOH . K 6 HOH B 36 536 97 HOH HOH . K 6 HOH B 37 537 107 HOH HOH . K 6 HOH B 38 538 111 HOH HOH . K 6 HOH B 39 539 112 HOH HOH . K 6 HOH B 40 540 113 HOH HOH . K 6 HOH B 41 541 114 HOH HOH . K 6 HOH B 42 542 115 HOH HOH . K 6 HOH B 43 543 116 HOH HOH . K 6 HOH B 44 544 117 HOH HOH . K 6 HOH B 45 545 118 HOH HOH . K 6 HOH B 46 546 119 HOH HOH . K 6 HOH B 47 547 120 HOH HOH . K 6 HOH B 48 548 121 HOH HOH . K 6 HOH B 49 549 122 HOH HOH . K 6 HOH B 50 550 128 HOH HOH . K 6 HOH B 51 551 132 HOH HOH . K 6 HOH B 52 552 133 HOH HOH . K 6 HOH B 53 553 134 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 66.318 _atom_site.Cartn_y 0.233 _atom_site.Cartn_z 86.452 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #