data_4RD7
#
_model_server_result.job_id            Azl1Ryoa3OFSILzHi1_Vzg 
_model_server_result.datetime_utc      '2024-10-19 15:40:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rd7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    4RD7 
#
_exptl.entry_id    4RD7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RD7 
_cell.length_a            43.687 
_cell.length_b            43.687 
_cell.length_c            132.811 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RD7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 43.687 43.687 66.4055 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C MSE 4 A MSE 1 1_555 A N GLU 5 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 A C LEU 25 A LEU 22 1_555 A N MSE 26 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C MSE 26 A MSE 23 1_555 A N PRO 27 A PRO 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale5 A C ALA 61 A ALA 58 1_555 A N MSE 62 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 62 A MSE 59 1_555 A N THR 63 A THR 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale7 A C GLN 102 A GLN 99 1_555 A N MSE 103 A MSE 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 A C MSE 103 A MSE 100 1_555 A N TYR 104 A TYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 A C ALA 111 A ALA 108 1_555 A N MSE 112 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 A C MSE 112 A MSE 109 1_555 A N VAL 113 A VAL 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4RD7 
_atom_sites.fract_transf_matrix[1][1]    0.02289 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02289 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007529 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 201 1 SO4 SO4 . 
C 2 SO4 A 1 202 2 SO4 SO4 . 
D 2 SO4 A 1 203 3 SO4 SO4 . 
E 2 SO4 A 1 204 4 SO4 SO4 . 
F 2 SO4 A 1 205 5 SO4 SO4 . 
G 3 GOL A 1 206 1 GOL GOL . 
H 4 HOH A 1 301 1 HOH HOH . 
H 4 HOH A 2 302 2 HOH HOH . 
H 4 HOH A 3 303 3 HOH HOH . 
H 4 HOH A 4 304 4 HOH HOH . 
H 4 HOH A 5 305 5 HOH HOH . 
H 4 HOH A 6 306 6 HOH HOH . 
H 4 HOH A 7 307 7 HOH HOH . 
H 4 HOH A 8 308 8 HOH HOH . 
H 4 HOH A 9 309 9 HOH HOH . 
H 4 HOH A 10 310 10 HOH HOH . 
H 4 HOH A 11 311 11 HOH HOH . 
H 4 HOH A 12 312 12 HOH HOH . 
H 4 HOH A 13 313 13 HOH HOH . 
H 4 HOH A 14 314 14 HOH HOH . 
H 4 HOH A 15 315 15 HOH HOH . 
H 4 HOH A 16 316 16 HOH HOH . 
H 4 HOH A 17 317 17 HOH HOH . 
H 4 HOH A 18 318 18 HOH HOH . 
H 4 HOH A 19 319 19 HOH HOH . 
H 4 HOH A 20 320 20 HOH HOH . 
H 4 HOH A 21 321 21 HOH HOH . 
H 4 HOH A 22 322 22 HOH HOH . 
H 4 HOH A 23 323 23 HOH HOH . 
H 4 HOH A 24 324 24 HOH HOH . 
H 4 HOH A 25 325 25 HOH HOH . 
H 4 HOH A 26 326 26 HOH HOH . 
H 4 HOH A 27 327 27 HOH HOH . 
H 4 HOH A 28 328 28 HOH HOH . 
H 4 HOH A 29 329 29 HOH HOH . 
H 4 HOH A 30 330 30 HOH HOH . 
H 4 HOH A 31 331 31 HOH HOH . 
H 4 HOH A 32 332 32 HOH HOH . 
H 4 HOH A 33 333 33 HOH HOH . 
H 4 HOH A 34 334 34 HOH HOH . 
H 4 HOH A 35 335 35 HOH HOH . 
H 4 HOH A 36 336 36 HOH HOH . 
H 4 HOH A 37 337 37 HOH HOH . 
H 4 HOH A 38 338 38 HOH HOH . 
H 4 HOH A 39 339 39 HOH HOH . 
H 4 HOH A 40 340 40 HOH HOH . 
H 4 HOH A 41 341 41 HOH HOH . 
H 4 HOH A 42 342 42 HOH HOH . 
H 4 HOH A 43 343 43 HOH HOH . 
H 4 HOH A 44 344 44 HOH HOH . 
H 4 HOH A 45 345 45 HOH HOH . 
H 4 HOH A 46 346 46 HOH HOH . 
H 4 HOH A 47 347 47 HOH HOH . 
H 4 HOH A 48 348 48 HOH HOH . 
H 4 HOH A 49 349 49 HOH HOH . 
H 4 HOH A 50 350 50 HOH HOH . 
H 4 HOH A 51 351 51 HOH HOH . 
H 4 HOH A 52 352 52 HOH HOH . 
H 4 HOH A 53 353 53 HOH HOH . 
H 4 HOH A 54 354 54 HOH HOH . 
H 4 HOH A 55 355 55 HOH HOH . 
H 4 HOH A 56 356 56 HOH HOH . 
H 4 HOH A 57 357 57 HOH HOH . 
H 4 HOH A 58 358 58 HOH HOH . 
H 4 HOH A 59 359 59 HOH HOH . 
H 4 HOH A 60 360 60 HOH HOH . 
H 4 HOH A 61 361 61 HOH HOH . 
H 4 HOH A 62 362 62 HOH HOH . 
H 4 HOH A 63 363 63 HOH HOH . 
H 4 HOH A 64 364 64 HOH HOH . 
H 4 HOH A 65 365 65 HOH HOH . 
H 4 HOH A 66 366 66 HOH HOH . 
H 4 HOH A 67 367 67 HOH HOH . 
H 4 HOH A 68 368 68 HOH HOH . 
H 4 HOH A 69 369 69 HOH HOH . 
H 4 HOH A 70 370 70 HOH HOH . 
H 4 HOH A 71 371 71 HOH HOH . 
H 4 HOH A 72 372 72 HOH HOH . 
H 4 HOH A 73 373 73 HOH HOH . 
H 4 HOH A 74 374 74 HOH HOH . 
H 4 HOH A 75 375 75 HOH HOH . 
H 4 HOH A 76 376 76 HOH HOH . 
H 4 HOH A 77 377 77 HOH HOH . 
H 4 HOH A 78 378 78 HOH HOH . 
H 4 HOH A 79 379 79 HOH HOH . 
H 4 HOH A 80 380 80 HOH HOH . 
H 4 HOH A 81 381 81 HOH HOH . 
H 4 HOH A 82 382 82 HOH HOH . 
H 4 HOH A 83 383 83 HOH HOH . 
H 4 HOH A 84 384 84 HOH HOH . 
H 4 HOH A 85 385 85 HOH HOH . 
H 4 HOH A 86 386 86 HOH HOH . 
H 4 HOH A 87 387 87 HOH HOH . 
H 4 HOH A 88 388 88 HOH HOH . 
H 4 HOH A 89 389 89 HOH HOH . 
H 4 HOH A 90 390 90 HOH HOH . 
H 4 HOH A 91 391 91 HOH HOH . 
H 4 HOH A 92 392 92 HOH HOH . 
H 4 HOH A 93 393 93 HOH HOH . 
H 4 HOH A 94 394 94 HOH HOH . 
H 4 HOH A 95 395 95 HOH HOH . 
H 4 HOH A 96 396 96 HOH HOH . 
H 4 HOH A 97 397 97 HOH HOH . 
H 4 HOH A 98 398 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 46.767 10.085 24.928 1 50.53 ? C1 GOL 206 A 1 
HETATM 2 O O1 GOL . . . G 3 47.602 9.123 25.532 1 53.45 ? O1 GOL 206 A 1 
HETATM 3 C C2 GOL . . . G 3 45.995 10.818 26.017 1 47.47 ? C2 GOL 206 A 1 
HETATM 4 O O2 GOL . . . G 3 46.926 11.44 26.88 1 48.33 ? O2 GOL 206 A 1 
HETATM 5 C C3 GOL . . . G 3 45.092 11.871 25.378 1 44.41 ? C3 GOL 206 A 1 
HETATM 6 O O3 GOL . . . G 3 45.836 13.009 25.009 1 43.19 ? O3 GOL 206 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#