data_4RDR # _model_server_result.job_id xsrZoFEeqVWLHte2MlygBw _model_server_result.datetime_utc '2024-11-04 22:47:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":816}' # _entry.id 4RDR # _exptl.entry_id 4RDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 21 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RDR _cell.length_a 101.073 _cell.length_b 155.819 _cell.length_c 159.607 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 Z N N ? 5 AA N N ? 5 BA N N ? 5 CA N N ? 5 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 262 A CYS 248 1_555 A SG CYS 299 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A C ASP 106 A ASP 92 1_555 A N MSE 107 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 107 A MSE 93 1_555 A N ALA 108 A ALA 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ILE 116 A ILE 102 1_555 A N MSE 117 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 117 A MSE 103 1_555 A N VAL 118 A VAL 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LYS 156 A LYS 142 1_555 A N MSE 157 A MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 157 A MSE 143 1_555 A N PRO 158 A PRO 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 A C PRO 409 A PRO 395 1_555 A N MSE 410 A MSE 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C MSE 410 A MSE 396 1_555 A N LEU 411 A LEU 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C GLU 579 A GLU 565 1_555 A N MSE 580 A MSE 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 580 A MSE 566 1_555 A N LYS 581 A LYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C HIS 692 A HIS 678 1_555 A N MSE 693 A MSE 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 A C MSE 693 A MSE 679 1_555 A N LEU 694 A LEU 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C GLN 735 A GLN 721 1_555 A N MSE 736 A MSE 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 A C MSE 736 A MSE 722 1_555 A N GLY 737 A GLY 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OD2 ASP 113 A ASP 99 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc2 A NE2 HIS 513 A HIS 499 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc3 A OE2 GLU 354 A GLU 340 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc4 A NE2 HIS 114 A HIS 100 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc5 A NE2 HIS 257 A HIS 243 1_555 C CD CD . A CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 A OE1 GLU 361 A GLU 347 1_555 C CD CD . A CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc7 A OD2 ASP 265 A ASP 251 1_555 B CD CD . A CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc8 A OD2 ASP 260 A ASP 246 1_555 C CD CD . A CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc9 A OE2 GLU 361 A GLU 347 1_555 C CD CD . A CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc10 A OD1 ASP 265 A ASP 251 1_555 B CD CD . A CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc11 A OD1 ASP 260 A ASP 246 1_555 C CD CD . A CD 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc12 A NE2 HIS 263 A HIS 249 1_555 B CD CD . A CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RDR _atom_sites.fract_transf_matrix[1][1] 0.009894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 801 1 CD CD . C 2 CD A 1 802 2 CD CD . D 3 ZN A 1 803 3 ZN ZN . E 4 C8E A 1 804 2314 C8E C8E . F 4 C8E A 1 805 2315 C8E C8E . G 4 C8E A 1 806 2316 C8E C8E . H 4 C8E A 1 807 2317 C8E C8E . I 4 C8E A 1 808 2318 C8E C8E . J 5 SO4 A 1 809 1 SO4 SO4 . K 5 SO4 A 1 810 2 SO4 SO4 . L 5 SO4 A 1 811 3 SO4 SO4 . M 5 SO4 A 1 812 4 SO4 SO4 . N 5 SO4 A 1 813 5 SO4 SO4 . O 5 SO4 A 1 814 6 SO4 SO4 . P 5 SO4 A 1 815 7 SO4 SO4 . Q 5 SO4 A 1 816 8 SO4 SO4 . R 5 SO4 A 1 817 9 SO4 SO4 . S 5 SO4 A 1 818 11 SO4 SO4 . T 5 SO4 A 1 819 12 SO4 SO4 . U 5 SO4 A 1 820 13 SO4 SO4 . V 5 SO4 A 1 821 14 SO4 SO4 . W 5 SO4 A 1 822 15 SO4 SO4 . X 5 SO4 A 1 823 16 SO4 SO4 . Y 5 SO4 A 1 824 17 SO4 SO4 . Z 5 SO4 A 1 825 18 SO4 SO4 . AA 5 SO4 A 1 826 19 SO4 SO4 . BA 5 SO4 A 1 827 20 SO4 SO4 . CA 5 SO4 A 1 828 21 SO4 SO4 . DA 5 SO4 A 1 829 22 SO4 SO4 . EA 6 GOL A 1 830 3970 GOL GOL . FA 6 GOL A 1 831 3972 GOL GOL . GA 6 GOL A 1 832 3974 GOL GOL . HA 6 GOL A 1 833 3975 GOL GOL . IA 7 EDO A 1 834 3321 EDO EDO . JA 7 EDO A 1 835 3322 EDO EDO . KA 7 EDO A 1 836 3324 EDO EDO . LA 7 EDO A 1 837 3325 EDO EDO . MA 7 EDO A 1 838 3326 EDO EDO . NA 8 HOH A 1 901 1 HOH HOH . NA 8 HOH A 2 902 4 HOH HOH . NA 8 HOH A 3 903 5 HOH HOH . NA 8 HOH A 4 904 7 HOH HOH . NA 8 HOH A 5 905 8 HOH HOH . NA 8 HOH A 6 906 9 HOH HOH . NA 8 HOH A 7 907 10 HOH HOH . NA 8 HOH A 8 908 11 HOH HOH . NA 8 HOH A 9 909 12 HOH HOH . NA 8 HOH A 10 910 14 HOH HOH . NA 8 HOH A 11 911 16 HOH HOH . NA 8 HOH A 12 912 17 HOH HOH . NA 8 HOH A 13 913 21 HOH HOH . NA 8 HOH A 14 914 24 HOH HOH . NA 8 HOH A 15 915 27 HOH HOH . NA 8 HOH A 16 916 30 HOH HOH . NA 8 HOH A 17 917 31 HOH HOH . NA 8 HOH A 18 918 32 HOH HOH . NA 8 HOH A 19 919 33 HOH HOH . NA 8 HOH A 20 920 35 HOH HOH . NA 8 HOH A 21 921 37 HOH HOH . NA 8 HOH A 22 922 38 HOH HOH . NA 8 HOH A 23 923 40 HOH HOH . NA 8 HOH A 24 924 41 HOH HOH . NA 8 HOH A 25 925 44 HOH HOH . NA 8 HOH A 26 926 45 HOH HOH . NA 8 HOH A 27 927 49 HOH HOH . NA 8 HOH A 28 928 55 HOH HOH . NA 8 HOH A 29 929 57 HOH HOH . NA 8 HOH A 30 930 58 HOH HOH . NA 8 HOH A 31 931 62 HOH HOH . NA 8 HOH A 32 932 67 HOH HOH . NA 8 HOH A 33 933 68 HOH HOH . NA 8 HOH A 34 934 71 HOH HOH . NA 8 HOH A 35 935 76 HOH HOH . NA 8 HOH A 36 936 80 HOH HOH . NA 8 HOH A 37 937 82 HOH HOH . NA 8 HOH A 38 938 88 HOH HOH . NA 8 HOH A 39 939 89 HOH HOH . NA 8 HOH A 40 940 90 HOH HOH . NA 8 HOH A 41 941 93 HOH HOH . NA 8 HOH A 42 942 94 HOH HOH . NA 8 HOH A 43 943 95 HOH HOH . NA 8 HOH A 44 944 96 HOH HOH . NA 8 HOH A 45 945 97 HOH HOH . NA 8 HOH A 46 946 98 HOH HOH . NA 8 HOH A 47 947 99 HOH HOH . NA 8 HOH A 48 948 101 HOH HOH . NA 8 HOH A 49 949 102 HOH HOH . NA 8 HOH A 50 950 105 HOH HOH . NA 8 HOH A 51 951 107 HOH HOH . NA 8 HOH A 52 952 108 HOH HOH . NA 8 HOH A 53 953 109 HOH HOH . NA 8 HOH A 54 954 111 HOH HOH . NA 8 HOH A 55 955 112 HOH HOH . NA 8 HOH A 56 956 113 HOH HOH . NA 8 HOH A 57 957 114 HOH HOH . NA 8 HOH A 58 958 116 HOH HOH . NA 8 HOH A 59 959 118 HOH HOH . NA 8 HOH A 60 960 119 HOH HOH . NA 8 HOH A 61 961 120 HOH HOH . NA 8 HOH A 62 962 121 HOH HOH . NA 8 HOH A 63 963 123 HOH HOH . NA 8 HOH A 64 964 124 HOH HOH . NA 8 HOH A 65 965 125 HOH HOH . NA 8 HOH A 66 966 126 HOH HOH . NA 8 HOH A 67 967 127 HOH HOH . NA 8 HOH A 68 968 128 HOH HOH . NA 8 HOH A 69 969 130 HOH HOH . NA 8 HOH A 70 970 131 HOH HOH . NA 8 HOH A 71 971 132 HOH HOH . NA 8 HOH A 72 972 134 HOH HOH . NA 8 HOH A 73 973 137 HOH HOH . NA 8 HOH A 74 974 138 HOH HOH . NA 8 HOH A 75 975 139 HOH HOH . NA 8 HOH A 76 976 140 HOH HOH . NA 8 HOH A 77 977 142 HOH HOH . NA 8 HOH A 78 978 145 HOH HOH . NA 8 HOH A 79 979 146 HOH HOH . NA 8 HOH A 80 980 148 HOH HOH . NA 8 HOH A 81 981 149 HOH HOH . NA 8 HOH A 82 982 150 HOH HOH . NA 8 HOH A 83 983 151 HOH HOH . NA 8 HOH A 84 984 152 HOH HOH . NA 8 HOH A 85 985 153 HOH HOH . NA 8 HOH A 86 986 154 HOH HOH . NA 8 HOH A 87 987 155 HOH HOH . NA 8 HOH A 88 988 156 HOH HOH . NA 8 HOH A 89 989 157 HOH HOH . NA 8 HOH A 90 990 158 HOH HOH . NA 8 HOH A 91 991 159 HOH HOH . NA 8 HOH A 92 992 160 HOH HOH . NA 8 HOH A 93 993 161 HOH HOH . NA 8 HOH A 94 994 162 HOH HOH . NA 8 HOH A 95 995 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . Q 5 -29.669 20.169 12.365 0.6 118.59 ? S SO4 816 A 1 HETATM 2 O O1 SO4 . . . Q 5 -28.456 20.89 12.011 0.6 117.54 ? O1 SO4 816 A 1 HETATM 3 O O2 SO4 . . . Q 5 -30.766 20.601 11.521 0.6 118.49 ? O2 SO4 816 A 1 HETATM 4 O O3 SO4 . . . Q 5 -29.451 18.748 12.167 0.6 118.26 ? O3 SO4 816 A 1 HETATM 5 O O4 SO4 . . . Q 5 -30.019 20.426 13.751 0.6 118.88 ? O4 SO4 816 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #