data_4RDT # _model_server_result.job_id '_D1zzQWqd7yFC2UgyFsYqw' _model_server_result.datetime_utc '2024-11-21 14:37:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":805}' # _entry.id 4RDT # _exptl.entry_id 4RDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RDT _cell.length_a 101.34 _cell.length_b 156.227 _cell.length_c 158.075 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,L 1 1 B,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 262 A CYS 249 1_555 A SG CYS 299 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 262 B CYS 249 1_555 B SG CYS 299 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A OD1 ASP 113 A ASP 99 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A OD2 ASP 113 A ASP 99 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc3 A NE2 HIS 114 A HIS 100 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 A OE2 GLU 354 A GLU 340 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc5 A NE2 HIS 513 A HIS 499 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? metalc ? metalc6 B OD1 ASP 113 B ASP 99 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc7 B NE2 HIS 114 B HIS 100 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc8 B OE2 GLU 354 B GLU 340 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? metalc ? metalc9 B NE2 HIS 513 B HIS 499 1_555 J ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 4RDT _atom_sites.fract_transf_matrix[1][1] 0.009868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 735 ZN ZN . D 3 GOL A 1 802 736 GOL GOL . E 3 GOL A 1 803 737 GOL GOL . F 3 GOL A 1 804 738 GOL GOL . G 4 C8E A 1 805 739 C8E C8E . H 4 C8E A 1 806 740 C8E C8E . I 5 SO4 A 1 807 741 SO4 SO4 . J 2 ZN B 1 801 735 ZN ZN . K 5 SO4 B 1 802 736 SO4 SO4 . L 6 HOH A 1 901 742 HOH HOH . L 6 HOH A 2 902 743 HOH HOH . L 6 HOH A 3 903 744 HOH HOH . L 6 HOH A 4 904 745 HOH HOH . L 6 HOH A 5 905 746 HOH HOH . L 6 HOH A 6 906 747 HOH HOH . L 6 HOH A 7 907 748 HOH HOH . L 6 HOH A 8 908 749 HOH HOH . L 6 HOH A 9 909 751 HOH HOH . M 6 HOH B 1 901 737 HOH HOH . M 6 HOH B 2 902 738 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C8E . . . G 4 -7.922 46.879 79.467 1 39.21 ? C1 C8E 805 A 1 HETATM 2 C C2 C8E . . . G 4 -7.834 47.631 78.164 1 47.1 ? C2 C8E 805 A 1 HETATM 3 C C3 C8E . . . G 4 -7.49 46.673 77.044 1 60.67 ? C3 C8E 805 A 1 HETATM 4 C C4 C8E . . . G 4 -8.065 47.105 75.707 1 57.64 ? C4 C8E 805 A 1 HETATM 5 C C5 C8E . . . G 4 -7.634 46.11 74.646 1 65.91 ? C5 C8E 805 A 1 HETATM 6 C C6 C8E . . . G 4 -8.017 46.567 73.257 1 69.47 ? C6 C8E 805 A 1 HETATM 7 C C7 C8E . . . G 4 -8.5 45.365 72.473 1 80.67 ? C7 C8E 805 A 1 HETATM 8 C C8 C8E . . . G 4 -7.381 44.747 71.664 1 82.8 ? C8 C8E 805 A 1 HETATM 9 O O9 C8E . . . G 4 -7.606 45.048 70.297 1 94.08 ? O9 C8E 805 A 1 HETATM 10 C C10 C8E . . . G 4 -7.06 44.056 69.447 1 92.36 ? C10 C8E 805 A 1 HETATM 11 C C11 C8E . . . G 4 -7.607 44.26 68.048 1 92.24 ? C11 C8E 805 A 1 HETATM 12 O O12 C8E . . . G 4 -7.009 45.407 67.466 1 91.2 ? O12 C8E 805 A 1 HETATM 13 C C13 C8E . . . G 4 -7.555 45.686 66.182 1 94.44 ? C13 C8E 805 A 1 HETATM 14 C C14 C8E . . . G 4 -7.22 44.544 65.235 1 105.8 ? C14 C8E 805 A 1 HETATM 15 O O15 C8E . . . G 4 -7.648 44.853 63.913 1 121.95 ? O15 C8E 805 A 1 HETATM 16 C C16 C8E . . . G 4 -6.835 44.199 62.941 1 128.87 ? C16 C8E 805 A 1 HETATM 17 C C17 C8E . . . G 4 -7.44 44.395 61.557 1 137.47 ? C17 C8E 805 A 1 HETATM 18 O O18 C8E . . . G 4 -7.479 43.143 60.876 1 142.72 ? O18 C8E 805 A 1 HETATM 19 C C19 C8E . . . G 4 -8.561 43.07 59.953 1 140.07 ? C19 C8E 805 A 1 HETATM 20 C C20 C8E . . . G 4 -8.015 42.944 58.537 1 135.75 ? C20 C8E 805 A 1 HETATM 21 O O21 C8E . . . G 4 -8.936 42.189 57.743 1 135.78 ? O21 C8E 805 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #