data_4RE3 # _model_server_result.job_id 5bk3n0xczoSmCmxa6BiqfA _model_server_result.datetime_utc '2024-11-24 09:27:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4re3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4RE3 # _exptl.entry_id 4RE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RE3 _cell.length_a 68.1 _cell.length_b 73.209 _cell.length_c 134.047 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 218 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 198 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 221 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 190 n n C1 C2 GOL sing 191 n n C1 H11 GOL sing 192 n n C1 H12 GOL sing 193 n n O1 HO1 GOL sing 194 n n C2 O2 GOL sing 195 n n C2 C3 GOL sing 196 n n C2 H2 GOL sing 197 n n O2 HO2 GOL sing 198 n n C3 O3 GOL sing 199 n n C3 H31 GOL sing 200 n n C3 H32 GOL sing 201 n n O3 HO3 GOL sing 202 n n # _atom_sites.entry_id 4RE3 _atom_sites.fract_transf_matrix[1][1] 0.014684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 4 GOL GOL . C 2 GOL A 1 502 1 GOL GOL . D 2 GOL A 1 503 2 GOL GOL . E 3 TRS A 1 504 3 TRS TRS . F 4 EPE A 1 505 7 EPE EPE . G 2 GOL A 1 506 5 GOL GOL . H 5 GIM A 1 507 1446 GIM GIM . I 6 HOH A 1 601 1 HOH HOH . I 6 HOH A 2 602 2 HOH HOH . I 6 HOH A 3 603 3 HOH HOH . I 6 HOH A 4 604 4 HOH HOH . I 6 HOH A 5 605 6 HOH HOH . I 6 HOH A 6 606 7 HOH HOH . I 6 HOH A 7 607 8 HOH HOH . I 6 HOH A 8 608 9 HOH HOH . I 6 HOH A 9 609 10 HOH HOH . I 6 HOH A 10 610 11 HOH HOH . I 6 HOH A 11 611 12 HOH HOH . I 6 HOH A 12 612 14 HOH HOH . I 6 HOH A 13 613 15 HOH HOH . I 6 HOH A 14 614 16 HOH HOH . I 6 HOH A 15 615 17 HOH HOH . I 6 HOH A 16 616 18 HOH HOH . I 6 HOH A 17 617 19 HOH HOH . I 6 HOH A 18 618 20 HOH HOH . I 6 HOH A 19 619 21 HOH HOH . I 6 HOH A 20 620 22 HOH HOH . I 6 HOH A 21 621 23 HOH HOH . I 6 HOH A 22 622 24 HOH HOH . I 6 HOH A 23 623 25 HOH HOH . I 6 HOH A 24 624 26 HOH HOH . I 6 HOH A 25 625 27 HOH HOH . I 6 HOH A 26 626 28 HOH HOH . I 6 HOH A 27 627 29 HOH HOH . I 6 HOH A 28 628 30 HOH HOH . I 6 HOH A 29 629 31 HOH HOH . I 6 HOH A 30 630 32 HOH HOH . I 6 HOH A 31 631 33 HOH HOH . I 6 HOH A 32 632 35 HOH HOH . I 6 HOH A 33 633 36 HOH HOH . I 6 HOH A 34 634 37 HOH HOH . I 6 HOH A 35 635 38 HOH HOH . I 6 HOH A 36 636 39 HOH HOH . I 6 HOH A 37 637 40 HOH HOH . I 6 HOH A 38 638 41 HOH HOH . I 6 HOH A 39 639 42 HOH HOH . I 6 HOH A 40 640 43 HOH HOH . I 6 HOH A 41 641 44 HOH HOH . I 6 HOH A 42 642 46 HOH HOH . I 6 HOH A 43 643 47 HOH HOH . I 6 HOH A 44 644 48 HOH HOH . I 6 HOH A 45 645 49 HOH HOH . I 6 HOH A 46 646 51 HOH HOH . I 6 HOH A 47 647 52 HOH HOH . I 6 HOH A 48 648 54 HOH HOH . I 6 HOH A 49 649 56 HOH HOH . I 6 HOH A 50 650 57 HOH HOH . I 6 HOH A 51 651 58 HOH HOH . I 6 HOH A 52 652 59 HOH HOH . I 6 HOH A 53 653 60 HOH HOH . I 6 HOH A 54 654 62 HOH HOH . I 6 HOH A 55 655 63 HOH HOH . I 6 HOH A 56 656 64 HOH HOH . I 6 HOH A 57 657 66 HOH HOH . I 6 HOH A 58 658 67 HOH HOH . I 6 HOH A 59 659 68 HOH HOH . I 6 HOH A 60 660 69 HOH HOH . I 6 HOH A 61 661 70 HOH HOH . I 6 HOH A 62 662 71 HOH HOH . I 6 HOH A 63 663 73 HOH HOH . I 6 HOH A 64 664 74 HOH HOH . I 6 HOH A 65 665 76 HOH HOH . I 6 HOH A 66 666 79 HOH HOH . I 6 HOH A 67 667 80 HOH HOH . I 6 HOH A 68 668 81 HOH HOH . I 6 HOH A 69 669 82 HOH HOH . I 6 HOH A 70 670 83 HOH HOH . I 6 HOH A 71 671 84 HOH HOH . I 6 HOH A 72 672 89 HOH HOH . I 6 HOH A 73 673 90 HOH HOH . I 6 HOH A 74 674 91 HOH HOH . I 6 HOH A 75 675 92 HOH HOH . I 6 HOH A 76 676 93 HOH HOH . I 6 HOH A 77 677 96 HOH HOH . I 6 HOH A 78 678 97 HOH HOH . I 6 HOH A 79 679 103 HOH HOH . I 6 HOH A 80 680 105 HOH HOH . I 6 HOH A 81 681 110 HOH HOH . I 6 HOH A 82 682 114 HOH HOH . I 6 HOH A 83 683 116 HOH HOH . I 6 HOH A 84 684 117 HOH HOH . I 6 HOH A 85 685 119 HOH HOH . I 6 HOH A 86 686 121 HOH HOH . I 6 HOH A 87 687 122 HOH HOH . I 6 HOH A 88 688 123 HOH HOH . I 6 HOH A 89 689 124 HOH HOH . I 6 HOH A 90 690 125 HOH HOH . I 6 HOH A 91 691 126 HOH HOH . I 6 HOH A 92 692 128 HOH HOH . I 6 HOH A 93 693 127 HOH HOH . I 6 HOH A 94 694 120 HOH HOH . I 6 HOH A 95 695 118 HOH HOH . I 6 HOH A 96 696 115 HOH HOH . I 6 HOH A 97 697 113 HOH HOH . I 6 HOH A 98 698 112 HOH HOH . I 6 HOH A 99 699 5 HOH HOH . I 6 HOH A 100 700 34 HOH HOH . I 6 HOH A 101 701 50 HOH HOH . I 6 HOH A 102 702 53 HOH HOH . I 6 HOH A 103 703 55 HOH HOH . I 6 HOH A 104 704 61 HOH HOH . I 6 HOH A 105 705 65 HOH HOH . I 6 HOH A 106 706 72 HOH HOH . I 6 HOH A 107 707 75 HOH HOH . I 6 HOH A 108 708 77 HOH HOH . I 6 HOH A 109 709 86 HOH HOH . I 6 HOH A 110 710 95 HOH HOH . I 6 HOH A 111 711 98 HOH HOH . I 6 HOH A 112 712 99 HOH HOH . I 6 HOH A 113 713 101 HOH HOH . I 6 HOH A 114 714 102 HOH HOH . I 6 HOH A 115 715 104 HOH HOH . I 6 HOH A 116 716 106 HOH HOH . I 6 HOH A 117 717 107 HOH HOH . I 6 HOH A 118 718 108 HOH HOH . I 6 HOH A 119 719 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 16.305 5.303 33.499 1 46.93 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . D 2 16.16 6.636 33.071 1 45.78 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . D 2 17.731 5.078 33.983 1 48.4 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . D 2 18.094 6.103 34.886 1 50.34 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . D 2 18.729 5.014 32.826 1 48.61 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . D 2 18.303 5.786 31.724 1 47.67 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #