data_4RE3 # _model_server_result.job_id YJh0rJ851ZHHZhM1bn_h8w _model_server_result.datetime_utc '2024-11-24 09:23:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4re3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 4RE3 # _exptl.entry_id 4RE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.2 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUCOIMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RE3 _cell.length_a 68.1 _cell.length_b 73.209 _cell.length_c 134.047 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 218 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 198 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 221 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.046 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H13 N2 O4 1' _chem_comp.formula_weight 201.2 _chem_comp.id GIM _chem_comp.mon_nstd_flag . _chem_comp.name GLUCOIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (5S,6S,7R,8R)-5-(HYDROXYMETHYL)-1,5,6,7,8,8A-HEXAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GIM sing 116 n n C1 N10 GIM doub 117 n y C1 N1 GIM sing 118 n y C2 C3 GIM sing 119 n n C2 O2 GIM sing 120 n n C2 H2 GIM sing 121 n n N10 C5 GIM sing 122 n n N10 C8 GIM sing 123 n y C3 C4 GIM sing 124 n n C3 O3 GIM sing 125 n n C3 H3 GIM sing 126 n n C4 C5 GIM sing 127 n n C4 O4 GIM sing 128 n n C4 H4 GIM sing 129 n n C5 C6 GIM sing 130 n n C5 H5 GIM sing 131 n n C6 O6 GIM sing 132 n n C6 H6C1 GIM sing 133 n n C6 H6C2 GIM sing 134 n n C7 C8 GIM doub 135 n y C7 N1 GIM sing 136 n y C7 H7 GIM sing 137 n n C8 H8 GIM sing 138 n n N1 H1 GIM sing 139 n n O3 HB GIM sing 140 n n O2 HA GIM sing 141 n n O4 HC GIM sing 142 n n O6 H6 GIM sing 143 n n # _atom_sites.entry_id 4RE3 _atom_sites.fract_transf_matrix[1][1] 0.014684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 4 GOL GOL . C 2 GOL A 1 502 1 GOL GOL . D 2 GOL A 1 503 2 GOL GOL . E 3 TRS A 1 504 3 TRS TRS . F 4 EPE A 1 505 7 EPE EPE . G 2 GOL A 1 506 5 GOL GOL . H 5 GIM A 1 507 1446 GIM GIM . I 6 HOH A 1 601 1 HOH HOH . I 6 HOH A 2 602 2 HOH HOH . I 6 HOH A 3 603 3 HOH HOH . I 6 HOH A 4 604 4 HOH HOH . I 6 HOH A 5 605 6 HOH HOH . I 6 HOH A 6 606 7 HOH HOH . I 6 HOH A 7 607 8 HOH HOH . I 6 HOH A 8 608 9 HOH HOH . I 6 HOH A 9 609 10 HOH HOH . I 6 HOH A 10 610 11 HOH HOH . I 6 HOH A 11 611 12 HOH HOH . I 6 HOH A 12 612 14 HOH HOH . I 6 HOH A 13 613 15 HOH HOH . I 6 HOH A 14 614 16 HOH HOH . I 6 HOH A 15 615 17 HOH HOH . I 6 HOH A 16 616 18 HOH HOH . I 6 HOH A 17 617 19 HOH HOH . I 6 HOH A 18 618 20 HOH HOH . I 6 HOH A 19 619 21 HOH HOH . I 6 HOH A 20 620 22 HOH HOH . I 6 HOH A 21 621 23 HOH HOH . I 6 HOH A 22 622 24 HOH HOH . I 6 HOH A 23 623 25 HOH HOH . I 6 HOH A 24 624 26 HOH HOH . I 6 HOH A 25 625 27 HOH HOH . I 6 HOH A 26 626 28 HOH HOH . I 6 HOH A 27 627 29 HOH HOH . I 6 HOH A 28 628 30 HOH HOH . I 6 HOH A 29 629 31 HOH HOH . I 6 HOH A 30 630 32 HOH HOH . I 6 HOH A 31 631 33 HOH HOH . I 6 HOH A 32 632 35 HOH HOH . I 6 HOH A 33 633 36 HOH HOH . I 6 HOH A 34 634 37 HOH HOH . I 6 HOH A 35 635 38 HOH HOH . I 6 HOH A 36 636 39 HOH HOH . I 6 HOH A 37 637 40 HOH HOH . I 6 HOH A 38 638 41 HOH HOH . I 6 HOH A 39 639 42 HOH HOH . I 6 HOH A 40 640 43 HOH HOH . I 6 HOH A 41 641 44 HOH HOH . I 6 HOH A 42 642 46 HOH HOH . I 6 HOH A 43 643 47 HOH HOH . I 6 HOH A 44 644 48 HOH HOH . I 6 HOH A 45 645 49 HOH HOH . I 6 HOH A 46 646 51 HOH HOH . I 6 HOH A 47 647 52 HOH HOH . I 6 HOH A 48 648 54 HOH HOH . I 6 HOH A 49 649 56 HOH HOH . I 6 HOH A 50 650 57 HOH HOH . I 6 HOH A 51 651 58 HOH HOH . I 6 HOH A 52 652 59 HOH HOH . I 6 HOH A 53 653 60 HOH HOH . I 6 HOH A 54 654 62 HOH HOH . I 6 HOH A 55 655 63 HOH HOH . I 6 HOH A 56 656 64 HOH HOH . I 6 HOH A 57 657 66 HOH HOH . I 6 HOH A 58 658 67 HOH HOH . I 6 HOH A 59 659 68 HOH HOH . I 6 HOH A 60 660 69 HOH HOH . I 6 HOH A 61 661 70 HOH HOH . I 6 HOH A 62 662 71 HOH HOH . I 6 HOH A 63 663 73 HOH HOH . I 6 HOH A 64 664 74 HOH HOH . I 6 HOH A 65 665 76 HOH HOH . I 6 HOH A 66 666 79 HOH HOH . I 6 HOH A 67 667 80 HOH HOH . I 6 HOH A 68 668 81 HOH HOH . I 6 HOH A 69 669 82 HOH HOH . I 6 HOH A 70 670 83 HOH HOH . I 6 HOH A 71 671 84 HOH HOH . I 6 HOH A 72 672 89 HOH HOH . I 6 HOH A 73 673 90 HOH HOH . I 6 HOH A 74 674 91 HOH HOH . I 6 HOH A 75 675 92 HOH HOH . I 6 HOH A 76 676 93 HOH HOH . I 6 HOH A 77 677 96 HOH HOH . I 6 HOH A 78 678 97 HOH HOH . I 6 HOH A 79 679 103 HOH HOH . I 6 HOH A 80 680 105 HOH HOH . I 6 HOH A 81 681 110 HOH HOH . I 6 HOH A 82 682 114 HOH HOH . I 6 HOH A 83 683 116 HOH HOH . I 6 HOH A 84 684 117 HOH HOH . I 6 HOH A 85 685 119 HOH HOH . I 6 HOH A 86 686 121 HOH HOH . I 6 HOH A 87 687 122 HOH HOH . I 6 HOH A 88 688 123 HOH HOH . I 6 HOH A 89 689 124 HOH HOH . I 6 HOH A 90 690 125 HOH HOH . I 6 HOH A 91 691 126 HOH HOH . I 6 HOH A 92 692 128 HOH HOH . I 6 HOH A 93 693 127 HOH HOH . I 6 HOH A 94 694 120 HOH HOH . I 6 HOH A 95 695 118 HOH HOH . I 6 HOH A 96 696 115 HOH HOH . I 6 HOH A 97 697 113 HOH HOH . I 6 HOH A 98 698 112 HOH HOH . I 6 HOH A 99 699 5 HOH HOH . I 6 HOH A 100 700 34 HOH HOH . I 6 HOH A 101 701 50 HOH HOH . I 6 HOH A 102 702 53 HOH HOH . I 6 HOH A 103 703 55 HOH HOH . I 6 HOH A 104 704 61 HOH HOH . I 6 HOH A 105 705 65 HOH HOH . I 6 HOH A 106 706 72 HOH HOH . I 6 HOH A 107 707 75 HOH HOH . I 6 HOH A 108 708 77 HOH HOH . I 6 HOH A 109 709 86 HOH HOH . I 6 HOH A 110 710 95 HOH HOH . I 6 HOH A 111 711 98 HOH HOH . I 6 HOH A 112 712 99 HOH HOH . I 6 HOH A 113 713 101 HOH HOH . I 6 HOH A 114 714 102 HOH HOH . I 6 HOH A 115 715 104 HOH HOH . I 6 HOH A 116 716 106 HOH HOH . I 6 HOH A 117 717 107 HOH HOH . I 6 HOH A 118 718 108 HOH HOH . I 6 HOH A 119 719 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GIM . . . H 5 8.349 13.663 12.984 1 19.09 ? C1 GIM 507 A 1 HETATM 2 C C2 GIM . . . H 5 8.112 12.201 13.171 1 18.66 ? C2 GIM 507 A 1 HETATM 3 N N10 GIM . . . H 5 9.197 14.197 12.098 1 19.29 ? N10 GIM 507 A 1 HETATM 4 C C3 GIM . . . H 5 9.013 11.397 12.22 1 17.81 ? C3 GIM 507 A 1 HETATM 5 C C4 GIM . . . H 5 9.24 12.115 10.896 1 17.98 ? C4 GIM 507 A 1 HETATM 6 C C5 GIM . . . H 5 10.044 13.385 11.179 1 18.94 ? C5 GIM 507 A 1 HETATM 7 C C6 GIM . . . H 5 10.464 14.191 9.938 1 19.94 ? C6 GIM 507 A 1 HETATM 8 C C7 GIM . . . H 5 8.235 15.841 13.181 1 18.41 ? C7 GIM 507 A 1 HETATM 9 C C8 GIM . . . H 5 9.143 15.533 12.202 1 18.99 ? C8 GIM 507 A 1 HETATM 10 N N1 GIM . . . H 5 7.76 14.676 13.651 1 18.31 ? N1 GIM 507 A 1 HETATM 11 O O3 GIM . . . H 5 8.453 10.101 12.002 1 18.44 ? O3 GIM 507 A 1 HETATM 12 O O2 GIM . . . H 5 8.386 11.826 14.531 1 17.46 ? O2 GIM 507 A 1 HETATM 13 O O4 GIM . . . H 5 9.908 11.267 9.954 1 19.52 ? O4 GIM 507 A 1 HETATM 14 O O6 GIM . . . H 5 9.35 14.871 9.322 1 18.49 ? O6 GIM 507 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #