data_4RE7 # _model_server_result.job_id qIP208vd5ZYYh-jlKrFgVQ _model_server_result.datetime_utc '2025-03-03 00:37:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4re7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 4RE7 # _exptl.entry_id 4RE7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 747.732 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Ru(tap)2(dppz) complex' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RE7 _cell.length_a 47.83 _cell.length_b 47.83 _cell.length_c 32.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RE7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -32.11 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N7 DI 3 A DI 3 1_555 B BA BA . A BA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc2 A O6 DG 4 A DG 4 1_555 B BA BA . A BA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? hydrog WATSON-CRICK hydrog1 A N3 DT 1 A DT 1 1_555 A N1 DA 10 A DA 10 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 1 A DT 1 1_555 A N6 DA 10 A DA 10 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 2 A DC 2 1_555 A N1 DG 9 A DG 9 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 2 A DC 2 1_555 A O6 DG 9 A DG 9 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 2 A DC 2 1_555 A N2 DG 9 A DG 9 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DI-DC PAIR' hydrog6 A N1 DI 3 A DI 3 1_555 A N3 DC 8 A DC 8 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 4 A DG 4 1_555 A N3 DC 7 A DC 7 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 4 A DG 4 1_555 A O2 DC 7 A DC 7 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 4 A DG 4 1_555 A N4 DC 7 A DC 7 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DC 5 A DC 5 1_555 A N1 DG 6 A DG 6 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 DC 5 A DC 5 1_555 A O6 DG 6 A DG 6 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 DC 5 A DC 5 1_555 A N2 DG 6 A DG 6 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 6 A DG 6 1_555 A N3 DC 5 A DC 5 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 6 A DG 6 1_555 A O2 DC 5 A DC 5 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 6 A DG 6 1_555 A N4 DC 5 A DC 5 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 7 A DC 7 1_555 A N1 DG 4 A DG 4 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 7 A DC 7 1_555 A O6 DG 4 A DG 4 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 7 A DC 7 1_555 A N2 DG 4 A DG 4 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DI PAIR' hydrog19 A N4 DC 8 A DC 8 1_555 A O6 DI 3 A DI 3 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 9 A DG 9 1_555 A N3 DC 2 A DC 2 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 9 A DG 9 1_555 A O2 DC 2 A DC 2 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 9 A DG 9 1_555 A N4 DC 2 A DC 2 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DA 10 A DA 10 1_555 A N3 DT 1 A DT 1 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 DA 10 A DA 10 1_555 A O4 DT 1 A DT 1 7_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C38 H22 N12 Ru 2' _chem_comp.formula_weight 747.732 _chem_comp.id RKL _chem_comp.mon_nstd_flag . _chem_comp.name 'Ru(tap)2(dppz) complex' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag RU N1 RKL sing 189 n n RU N2 RKL sing 190 n n RU N5 RKL sing 191 n n RU N8 RKL sing 192 n n RU N9 RKL sing 193 n n RU N12 RKL sing 194 n n C1 N2 RKL doub 195 n y C1 C5 RKL sing 196 n y C1 C10 RKL sing 197 n y N1 C10 RKL doub 198 n y N1 C12 RKL sing 199 n y C2 N2 RKL sing 200 n y C2 C3 RKL doub 201 n y C2 H2 RKL sing 202 n n C3 C4 RKL sing 203 n y C3 H3 RKL sing 204 n n N3 C6 RKL doub 205 n y N3 C15 RKL sing 206 n y C4 C5 RKL doub 207 n y C4 H4 RKL sing 208 n n N4 C7 RKL doub 209 n y N4 C13 RKL sing 210 n y C5 C6 RKL sing 211 n y N5 C19 RKL doub 212 n y N5 C20 RKL sing 213 n y C6 C7 RKL sing 214 n y N6 C21 RKL sing 215 n y N6 C22 RKL doub 216 n y C7 C8 RKL sing 217 n y N7 C25 RKL doub 218 n y N7 C27 RKL sing 219 n y C8 C9 RKL doub 220 n y C8 C10 RKL sing 221 n y N8 C26 RKL doub 222 n y N8 C28 RKL sing 223 n y C9 C11 RKL sing 224 n y C9 H9 RKL sing 225 n n N9 C29 RKL doub 226 n y N9 C30 RKL sing 227 n y N10 C31 RKL sing 228 n y N10 C32 RKL doub 229 n y C11 C12 RKL doub 230 n y C11 H11 RKL sing 231 n n N11 C35 RKL doub 232 n y N11 C37 RKL sing 233 n y C12 H12 RKL sing 234 n n N12 C36 RKL doub 235 n y N12 C38 RKL sing 236 n y C13 C14 RKL sing 237 n y C13 C15 RKL doub 238 n y C14 C18 RKL doub 239 n y C14 H14 RKL sing 240 n n C15 C16 RKL sing 241 n y C16 C17 RKL doub 242 n y C16 H16 RKL sing 243 n n C17 C18 RKL sing 244 n y C17 H17 RKL sing 245 n n C18 H18 RKL sing 246 n n C19 C22 RKL sing 247 n y C19 C26 RKL sing 248 n y C20 C21 RKL doub 249 n y C20 H20 RKL sing 250 n n C21 H21 RKL sing 251 n n C22 C23 RKL sing 252 n y C23 C24 RKL doub 253 n y C23 H23 RKL sing 254 n n C24 C25 RKL sing 255 n y C24 H24 RKL sing 256 n n C25 C26 RKL sing 257 n y C27 C28 RKL doub 258 n y C27 H27 RKL sing 259 n n C28 H28 RKL sing 260 n n C29 C32 RKL sing 261 n y C29 C36 RKL sing 262 n y C30 C31 RKL doub 263 n y C30 H30 RKL sing 264 n n C31 H31 RKL sing 265 n n C32 C33 RKL sing 266 n y C33 C34 RKL doub 267 n y C33 H33 RKL sing 268 n n C34 C35 RKL sing 269 n y C34 H34 RKL sing 270 n n C35 C36 RKL sing 271 n y C37 C38 RKL doub 272 n y C37 H37 RKL sing 273 n n C38 H38 RKL sing 274 n n # _atom_sites.entry_id 4RE7 _atom_sites.fract_transf_matrix[1][1] 0.020907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA A 1 101 1 BA BA . C 3 RKL A 1 102 11 RKL RKL . D 4 HOH A 1 201 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 RU RU RKL . . . C 3 0.518 15.703 -17.432 1 61.05 ? RU RKL 102 A 1 HETATM 2 C C1 RKL . . . C 3 -1.253 17.06 -19.192 1 64.43 ? C1 RKL 102 A 1 HETATM 3 N N1 RKL . . . C 3 -1.322 15.032 -18.036 1 67.53 ? N1 RKL 102 A 1 HETATM 4 C C2 RKL . . . C 3 0.66 18.363 -18.88 1 76.8 ? C2 RKL 102 A 1 HETATM 5 N N2 RKL . . . C 3 -0.06 17.266 -18.629 1 69.83 ? N2 RKL 102 A 1 HETATM 6 C C3 RKL . . . C 3 0.138 19.331 -19.737 1 64.03 ? C3 RKL 102 A 1 HETATM 7 N N3 RKL . . . C 3 -3.631 18.613 -21.431 1 81.73 ? N3 RKL 102 A 1 HETATM 8 C C4 RKL . . . C 3 -1.111 19.145 -20.327 1 66.75 ? C4 RKL 102 A 1 HETATM 9 N N4 RKL . . . C 3 -4.956 16.301 -20.825 1 73.95 ? N4 RKL 102 A 1 HETATM 10 C C5 RKL . . . C 3 -1.819 17.984 -20.049 1 74.63 ? C5 RKL 102 A 1 HETATM 11 N N5 RKL . . . C 3 2.413 16.431 -17.101 1 61.18 ? N5 RKL 102 A 1 HETATM 12 C C6 RKL . . . C 3 -3.073 17.728 -20.598 1 87.91 ? C6 RKL 102 A 1 HETATM 13 N N6 RKL . . . C 3 5.024 17.177 -17.084 1 58.73 ? N6 RKL 102 A 1 HETATM 14 C C7 RKL . . . C 3 -3.743 16.544 -20.287 1 79.68 ? C7 RKL 102 A 1 HETATM 15 N N7 RKL . . . C 3 2.811 14.144 -21.092 1 61.16 ? N7 RKL 102 A 1 HETATM 16 C C8 RKL . . . C 3 -3.164 15.618 -19.422 1 73.19 ? C8 RKL 102 A 1 HETATM 17 N N8 RKL . . . C 3 1.38 14.989 -18.996 1 50.67 ? N8 RKL 102 A 1 HETATM 18 C C9 RKL . . . C 3 -3.793 14.428 -19.081 1 75.96 ? C9 RKL 102 A 1 HETATM 19 N N9 RKL . . . C 3 0.951 14.159 -16.236 1 52.2 ? N9 RKL 102 A 1 HETATM 20 C C10 RKL . . . C 3 -1.921 15.881 -18.879 1 69.87 ? C10 RKL 102 A 1 HETATM 21 N N10 RKL . . . C 3 1.413 12.282 -14.323 1 48.69 ? N10 RKL 102 A 1 HETATM 22 C C11 RKL . . . C 3 -3.145 13.557 -18.207 1 81.03 ? C11 RKL 102 A 1 HETATM 23 N N11 RKL . . . C 3 -0.946 17.117 -13.176 1 52.3 ? N11 RKL 102 A 1 HETATM 24 C C12 RKL . . . C 3 -1.888 13.874 -17.692 1 83.77 ? C12 RKL 102 A 1 HETATM 25 N N12 RKL . . . C 3 -0.168 16.445 -15.698 1 49.29 ? N12 RKL 102 A 1 HETATM 26 C C13 RKL . . . C 3 -5.508 17.192 -21.655 1 63.48 ? C13 RKL 102 A 1 HETATM 27 C C14 RKL . . . C 3 -6.757 16.943 -22.211 1 70.52 ? C14 RKL 102 A 1 HETATM 28 C C15 RKL . . . C 3 -4.833 18.368 -21.963 1 65.22 ? C15 RKL 102 A 1 HETATM 29 C C16 RKL . . . C 3 -5.406 19.291 -22.828 1 71.51 ? C16 RKL 102 A 1 HETATM 30 C C17 RKL . . . C 3 -6.657 19.045 -23.381 1 74.95 ? C17 RKL 102 A 1 HETATM 31 C C18 RKL . . . C 3 -7.332 17.87 -23.073 1 79.33 ? C18 RKL 102 A 1 HETATM 32 C C19 RKL . . . C 3 3.227 16.07 -18.081 1 58.9 ? C19 RKL 102 A 1 HETATM 33 C C20 RKL . . . C 3 2.853 17.167 -16.08 1 72.42 ? C20 RKL 102 A 1 HETATM 34 C C21 RKL . . . C 3 4.199 17.544 -16.086 1 52.85 ? C21 RKL 102 A 1 HETATM 35 C C22 RKL . . . C 3 4.554 16.429 -18.106 1 51.88 ? C22 RKL 102 A 1 HETATM 36 C C23 RKL . . . C 3 5.339 16.006 -19.181 1 67.76 ? C23 RKL 102 A 1 HETATM 37 C C24 RKL . . . C 3 4.774 15.232 -20.202 1 54.37 ? C24 RKL 102 A 1 HETATM 38 C C25 RKL . . . C 3 3.425 14.881 -20.154 1 49.75 ? C25 RKL 102 A 1 HETATM 39 C C26 RKL . . . C 3 2.669 15.309 -19.087 1 56.5 ? C26 RKL 102 A 1 HETATM 40 C C27 RKL . . . C 3 1.574 13.853 -20.994 1 68.01 ? C27 RKL 102 A 1 HETATM 41 C C28 RKL . . . C 3 0.816 14.259 -19.963 1 59.55 ? C28 RKL 102 A 1 HETATM 42 C C29 RKL . . . C 3 0.611 14.386 -14.971 1 51.28 ? C29 RKL 102 A 1 HETATM 43 C C30 RKL . . . C 3 1.533 13.011 -16.591 1 68.01 ? C30 RKL 102 A 1 HETATM 44 C C31 RKL . . . C 3 1.762 12.054 -15.601 1 51.2 ? C31 RKL 102 A 1 HETATM 45 C C32 RKL . . . C 3 0.831 13.452 -13.982 1 48.6 ? C32 RKL 102 A 1 HETATM 46 C C33 RKL . . . C 3 0.445 13.751 -12.676 1 50.89 ? C33 RKL 102 A 1 HETATM 47 C C34 RKL . . . C 3 -0.155 14.981 -12.386 1 65.13 ? C34 RKL 102 A 1 HETATM 48 C C35 RKL . . . C 3 -0.371 15.915 -13.399 1 61.9 ? C35 RKL 102 A 1 HETATM 49 C C36 RKL . . . C 3 0.017 15.603 -14.684 1 49.26 ? C36 RKL 102 A 1 HETATM 50 C C37 RKL . . . C 3 -1.124 17.972 -14.199 1 69.12 ? C37 RKL 102 A 1 HETATM 51 C C38 RKL . . . C 3 -0.724 17.641 -15.496 1 78.15 ? C38 RKL 102 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #