data_4RE8 # _model_server_result.job_id Xf1L4MIwxewpJel_Aey7vg _model_server_result.datetime_utc '2024-11-09 02:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4re8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4RE8 # _exptl.entry_id 4RE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.413 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3,4,5-trihydroxyphenyl)dodecan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RE8 _cell.length_a 74.635 _cell.length_b 76.524 _cell.length_c 128.627 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,H 1 1 B,D,E,F,G,I 2 1 A,B,C,D,E,F,G,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H28 O4' _chem_comp.formula_weight 308.413 _chem_comp.id 3MJ _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3,4,5-trihydroxyphenyl)dodecan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 3MJ sing 1 n n C16 C15 3MJ sing 2 n n C17 C18 3MJ sing 3 n n O10 C6 3MJ sing 4 n n O22 C1 3MJ doub 5 n n C18 C19 3MJ sing 6 n n C7 C6 3MJ doub 7 n y C7 C2 3MJ sing 8 n y C6 C5 3MJ sing 9 n y C15 C14 3MJ sing 10 n n C1 C2 3MJ sing 11 n n C1 C11 3MJ sing 12 n n C14 C13 3MJ sing 13 n n C2 C3 3MJ doub 14 n y C19 C20 3MJ sing 15 n n C5 O9 3MJ sing 16 n n C5 C4 3MJ doub 17 n y C3 C4 3MJ sing 18 n y C11 C12 3MJ sing 19 n n C4 O8 3MJ sing 20 n n C13 C12 3MJ sing 21 n n C20 C21 3MJ sing 22 n n C7 H1 3MJ sing 23 n n C3 H2 3MJ sing 24 n n C11 H3 3MJ sing 25 n n C11 H4 3MJ sing 26 n n C12 H5 3MJ sing 27 n n C12 H6 3MJ sing 28 n n C13 H7 3MJ sing 29 n n C13 H8 3MJ sing 30 n n C14 H9 3MJ sing 31 n n C14 H10 3MJ sing 32 n n C15 H11 3MJ sing 33 n n C15 H12 3MJ sing 34 n n C16 H13 3MJ sing 35 n n C16 H14 3MJ sing 36 n n C17 H15 3MJ sing 37 n n C17 H16 3MJ sing 38 n n O8 H17 3MJ sing 39 n n O9 H18 3MJ sing 40 n n O10 H19 3MJ sing 41 n n C18 H20 3MJ sing 42 n n C18 H21 3MJ sing 43 n n C19 H22 3MJ sing 44 n n C19 H23 3MJ sing 45 n n C20 H24 3MJ sing 46 n n C20 H25 3MJ sing 47 n n C21 H26 3MJ sing 48 n n C21 H27 3MJ sing 49 n n C21 H28 3MJ sing 50 n n # _atom_sites.entry_id 4RE8 _atom_sites.fract_transf_matrix[1][1] 0.013399 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 301 301 GOL GOL . D 2 GOL A 1 301 302 GOL GOL . E 3 3MJ A 1 302 1 3MJ 442 . F 2 GOL A 1 303 1 GOL GOL . G 2 GOL A 1 304 2 GOL GOL . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 2 HOH HOH . H 4 HOH B 3 403 6 HOH HOH . H 4 HOH B 4 404 10 HOH HOH . H 4 HOH B 5 405 11 HOH HOH . H 4 HOH B 6 406 13 HOH HOH . H 4 HOH B 7 407 14 HOH HOH . H 4 HOH B 8 408 16 HOH HOH . H 4 HOH B 9 409 17 HOH HOH . H 4 HOH B 10 410 21 HOH HOH . H 4 HOH B 11 411 22 HOH HOH . H 4 HOH B 12 412 23 HOH HOH . H 4 HOH B 13 413 25 HOH HOH . H 4 HOH B 14 414 29 HOH HOH . H 4 HOH B 15 415 30 HOH HOH . H 4 HOH B 16 416 33 HOH HOH . H 4 HOH B 17 417 35 HOH HOH . H 4 HOH B 18 418 36 HOH HOH . H 4 HOH B 19 419 39 HOH HOH . H 4 HOH B 20 420 42 HOH HOH . H 4 HOH B 21 421 44 HOH HOH . H 4 HOH B 22 422 48 HOH HOH . H 4 HOH B 23 423 49 HOH HOH . H 4 HOH B 24 424 50 HOH HOH . H 4 HOH B 25 425 51 HOH HOH . H 4 HOH B 26 426 52 HOH HOH . H 4 HOH B 27 427 53 HOH HOH . H 4 HOH B 28 428 55 HOH HOH . H 4 HOH B 29 429 56 HOH HOH . H 4 HOH B 30 430 62 HOH HOH . H 4 HOH B 31 431 63 HOH HOH . H 4 HOH B 32 432 65 HOH HOH . H 4 HOH B 33 433 66 HOH HOH . H 4 HOH B 34 434 68 HOH HOH . H 4 HOH B 35 435 72 HOH HOH . H 4 HOH B 36 436 73 HOH HOH . H 4 HOH B 37 437 75 HOH HOH . H 4 HOH B 38 438 76 HOH HOH . H 4 HOH B 39 439 78 HOH HOH . H 4 HOH B 40 440 82 HOH HOH . H 4 HOH B 41 441 83 HOH HOH . H 4 HOH B 42 442 85 HOH HOH . H 4 HOH B 43 443 87 HOH HOH . H 4 HOH B 44 444 89 HOH HOH . H 4 HOH B 45 445 94 HOH HOH . H 4 HOH B 46 446 95 HOH HOH . H 4 HOH B 47 447 96 HOH HOH . H 4 HOH B 48 448 99 HOH HOH . H 4 HOH B 49 449 101 HOH HOH . H 4 HOH B 50 450 102 HOH HOH . H 4 HOH B 51 451 105 HOH HOH . H 4 HOH B 52 452 106 HOH HOH . H 4 HOH B 53 453 117 HOH HOH . H 4 HOH B 54 454 118 HOH HOH . H 4 HOH B 55 455 120 HOH HOH . H 4 HOH B 56 456 124 HOH HOH . H 4 HOH B 57 457 125 HOH HOH . H 4 HOH B 58 458 128 HOH HOH . H 4 HOH B 59 459 130 HOH HOH . H 4 HOH B 60 460 133 HOH HOH . H 4 HOH B 61 461 139 HOH HOH . H 4 HOH B 62 462 142 HOH HOH . H 4 HOH B 63 463 146 HOH HOH . H 4 HOH B 64 464 149 HOH HOH . H 4 HOH B 65 465 150 HOH HOH . H 4 HOH B 66 466 151 HOH HOH . H 4 HOH B 67 467 152 HOH HOH . H 4 HOH B 68 468 154 HOH HOH . H 4 HOH B 69 469 155 HOH HOH . H 4 HOH B 70 470 156 HOH HOH . H 4 HOH B 71 471 157 HOH HOH . H 4 HOH B 72 472 159 HOH HOH . I 4 HOH A 1 401 3 HOH HOH . I 4 HOH A 2 402 4 HOH HOH . I 4 HOH A 3 403 5 HOH HOH . I 4 HOH A 4 404 7 HOH HOH . I 4 HOH A 5 405 8 HOH HOH . I 4 HOH A 6 406 9 HOH HOH . I 4 HOH A 7 407 12 HOH HOH . I 4 HOH A 8 408 15 HOH HOH . I 4 HOH A 9 409 18 HOH HOH . I 4 HOH A 10 410 19 HOH HOH . I 4 HOH A 11 411 20 HOH HOH . I 4 HOH A 12 412 24 HOH HOH . I 4 HOH A 13 413 26 HOH HOH . I 4 HOH A 14 414 27 HOH HOH . I 4 HOH A 15 415 28 HOH HOH . I 4 HOH A 16 416 31 HOH HOH . I 4 HOH A 17 417 32 HOH HOH . I 4 HOH A 18 418 34 HOH HOH . I 4 HOH A 19 419 37 HOH HOH . I 4 HOH A 20 420 38 HOH HOH . I 4 HOH A 21 421 40 HOH HOH . I 4 HOH A 22 422 41 HOH HOH . I 4 HOH A 23 423 43 HOH HOH . I 4 HOH A 24 424 45 HOH HOH . I 4 HOH A 25 425 46 HOH HOH . I 4 HOH A 26 426 47 HOH HOH . I 4 HOH A 27 427 54 HOH HOH . I 4 HOH A 28 428 57 HOH HOH . I 4 HOH A 29 429 58 HOH HOH . I 4 HOH A 30 430 59 HOH HOH . I 4 HOH A 31 431 60 HOH HOH . I 4 HOH A 32 432 61 HOH HOH . I 4 HOH A 33 433 64 HOH HOH . I 4 HOH A 34 434 67 HOH HOH . I 4 HOH A 35 435 69 HOH HOH . I 4 HOH A 36 436 70 HOH HOH . I 4 HOH A 37 437 71 HOH HOH . I 4 HOH A 38 438 74 HOH HOH . I 4 HOH A 39 439 77 HOH HOH . I 4 HOH A 40 440 79 HOH HOH . I 4 HOH A 41 441 80 HOH HOH . I 4 HOH A 42 442 81 HOH HOH . I 4 HOH A 43 443 84 HOH HOH . I 4 HOH A 44 444 86 HOH HOH . I 4 HOH A 45 445 88 HOH HOH . I 4 HOH A 46 446 90 HOH HOH . I 4 HOH A 47 447 91 HOH HOH . I 4 HOH A 48 448 92 HOH HOH . I 4 HOH A 49 449 93 HOH HOH . I 4 HOH A 50 450 97 HOH HOH . I 4 HOH A 51 451 98 HOH HOH . I 4 HOH A 52 452 100 HOH HOH . I 4 HOH A 53 453 103 HOH HOH . I 4 HOH A 54 454 104 HOH HOH . I 4 HOH A 55 455 107 HOH HOH . I 4 HOH A 56 456 108 HOH HOH . I 4 HOH A 57 457 109 HOH HOH . I 4 HOH A 58 458 110 HOH HOH . I 4 HOH A 59 459 111 HOH HOH . I 4 HOH A 60 460 112 HOH HOH . I 4 HOH A 61 461 113 HOH HOH . I 4 HOH A 62 462 114 HOH HOH . I 4 HOH A 63 463 115 HOH HOH . I 4 HOH A 64 464 116 HOH HOH . I 4 HOH A 65 465 119 HOH HOH . I 4 HOH A 66 466 121 HOH HOH . I 4 HOH A 67 467 122 HOH HOH . I 4 HOH A 68 468 123 HOH HOH . I 4 HOH A 69 469 127 HOH HOH . I 4 HOH A 70 470 129 HOH HOH . I 4 HOH A 71 471 131 HOH HOH . I 4 HOH A 72 472 132 HOH HOH . I 4 HOH A 73 473 134 HOH HOH . I 4 HOH A 74 474 135 HOH HOH . I 4 HOH A 75 475 136 HOH HOH . I 4 HOH A 76 476 137 HOH HOH . I 4 HOH A 77 477 138 HOH HOH . I 4 HOH A 78 478 140 HOH HOH . I 4 HOH A 79 479 141 HOH HOH . I 4 HOH A 80 480 143 HOH HOH . I 4 HOH A 81 481 144 HOH HOH . I 4 HOH A 82 482 145 HOH HOH . I 4 HOH A 83 483 147 HOH HOH . I 4 HOH A 84 484 148 HOH HOH . I 4 HOH A 85 485 153 HOH HOH . I 4 HOH A 86 486 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 3MJ . . . E 3 -15.624 -17.978 67.872 1 85.08 ? C7 3MJ 302 A 1 HETATM 2 C C5 3MJ . . . E 3 -17.331 -19.291 68.909 1 77.27 ? C5 3MJ 302 A 1 HETATM 3 C C6 3MJ . . . E 3 -16.976 -18.318 67.986 1 92.03 ? C6 3MJ 302 A 1 HETATM 4 C C4 3MJ . . . E 3 -16.377 -19.922 69.713 1 69.11 ? C4 3MJ 302 A 1 HETATM 5 C C3 3MJ . . . E 3 -15.049 -19.569 69.579 1 72.1 ? C3 3MJ 302 A 1 HETATM 6 C C2 3MJ . . . E 3 -14.68 -18.598 68.674 1 71.6 ? C2 3MJ 302 A 1 HETATM 7 C C1 3MJ . . . E 3 -13.259 -18.207 68.538 1 77.97 ? C1 3MJ 302 A 1 HETATM 8 C C11 3MJ . . . E 3 -12.29 -18.406 69.682 1 74.69 ? C11 3MJ 302 A 1 HETATM 9 C C12 3MJ . . . E 3 -11.488 -17.142 69.967 1 73.19 ? C12 3MJ 302 A 1 HETATM 10 C C13 3MJ . . . E 3 -9.985 -17.337 69.803 1 71.09 ? C13 3MJ 302 A 1 HETATM 11 C C14 3MJ . . . E 3 -9.568 -16.484 68.631 1 75.14 ? C14 3MJ 302 A 1 HETATM 12 C C15 3MJ . . . E 3 -8.149 -16.741 68.193 1 73.13 ? C15 3MJ 302 A 1 HETATM 13 C C16 3MJ . . . E 3 -7.941 -15.849 66.977 1 83.91 ? C16 3MJ 302 A 1 HETATM 14 C C17 3MJ . . . E 3 -6.873 -14.79 67.084 1 89.66 ? C17 3MJ 302 A 1 HETATM 15 O O8 3MJ . . . E 3 -16.687 -20.89 70.634 1 45.37 ? O8 3MJ 302 A 1 HETATM 16 O O9 3MJ . . . E 3 -18.646 -19.597 68.993 1 99.89 ? O9 3MJ 302 A 1 HETATM 17 O O10 3MJ . . . E 3 -17.952 -17.709 67.209 1 85.83 ? O10 3MJ 302 A 1 HETATM 18 C C18 3MJ . . . E 3 -5.576 -15.263 67.723 1 101.59 ? C18 3MJ 302 A 1 HETATM 19 C C19 3MJ . . . E 3 -5.141 -14.366 68.871 1 107.88 ? C19 3MJ 302 A 1 HETATM 20 C C20 3MJ . . . E 3 -5.146 -15.105 70.201 1 114.54 ? C20 3MJ 302 A 1 HETATM 21 C C21 3MJ . . . E 3 -4.281 -14.35 71.176 1 119.13 ? C21 3MJ 302 A 1 HETATM 22 O O22 3MJ . . . E 3 -12.882 -17.729 67.479 1 90.45 ? O22 3MJ 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #