data_4RE8 # _model_server_result.job_id tyjTMI0M7yEak0zctkIzsg _model_server_result.datetime_utc '2024-11-09 02:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4re8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 4RE8 # _exptl.entry_id 4RE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RE8 _cell.length_a 74.635 _cell.length_b 76.524 _cell.length_c 128.627 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,H 1 1 B,D,E,F,G,I 2 1 A,B,C,D,E,F,G,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 179 n n C1 C2 GOL sing 180 n n C1 H11 GOL sing 181 n n C1 H12 GOL sing 182 n n O1 HO1 GOL sing 183 n n C2 O2 GOL sing 184 n n C2 C3 GOL sing 185 n n C2 H2 GOL sing 186 n n O2 HO2 GOL sing 187 n n C3 O3 GOL sing 188 n n C3 H31 GOL sing 189 n n C3 H32 GOL sing 190 n n O3 HO3 GOL sing 191 n n # _atom_sites.entry_id 4RE8 _atom_sites.fract_transf_matrix[1][1] 0.013399 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 301 301 GOL GOL . D 2 GOL A 1 301 302 GOL GOL . E 3 3MJ A 1 302 1 3MJ 442 . F 2 GOL A 1 303 1 GOL GOL . G 2 GOL A 1 304 2 GOL GOL . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 2 HOH HOH . H 4 HOH B 3 403 6 HOH HOH . H 4 HOH B 4 404 10 HOH HOH . H 4 HOH B 5 405 11 HOH HOH . H 4 HOH B 6 406 13 HOH HOH . H 4 HOH B 7 407 14 HOH HOH . H 4 HOH B 8 408 16 HOH HOH . H 4 HOH B 9 409 17 HOH HOH . H 4 HOH B 10 410 21 HOH HOH . H 4 HOH B 11 411 22 HOH HOH . H 4 HOH B 12 412 23 HOH HOH . H 4 HOH B 13 413 25 HOH HOH . H 4 HOH B 14 414 29 HOH HOH . H 4 HOH B 15 415 30 HOH HOH . H 4 HOH B 16 416 33 HOH HOH . H 4 HOH B 17 417 35 HOH HOH . H 4 HOH B 18 418 36 HOH HOH . H 4 HOH B 19 419 39 HOH HOH . H 4 HOH B 20 420 42 HOH HOH . H 4 HOH B 21 421 44 HOH HOH . H 4 HOH B 22 422 48 HOH HOH . H 4 HOH B 23 423 49 HOH HOH . H 4 HOH B 24 424 50 HOH HOH . H 4 HOH B 25 425 51 HOH HOH . H 4 HOH B 26 426 52 HOH HOH . H 4 HOH B 27 427 53 HOH HOH . H 4 HOH B 28 428 55 HOH HOH . H 4 HOH B 29 429 56 HOH HOH . H 4 HOH B 30 430 62 HOH HOH . H 4 HOH B 31 431 63 HOH HOH . H 4 HOH B 32 432 65 HOH HOH . H 4 HOH B 33 433 66 HOH HOH . H 4 HOH B 34 434 68 HOH HOH . H 4 HOH B 35 435 72 HOH HOH . H 4 HOH B 36 436 73 HOH HOH . H 4 HOH B 37 437 75 HOH HOH . H 4 HOH B 38 438 76 HOH HOH . H 4 HOH B 39 439 78 HOH HOH . H 4 HOH B 40 440 82 HOH HOH . H 4 HOH B 41 441 83 HOH HOH . H 4 HOH B 42 442 85 HOH HOH . H 4 HOH B 43 443 87 HOH HOH . H 4 HOH B 44 444 89 HOH HOH . H 4 HOH B 45 445 94 HOH HOH . H 4 HOH B 46 446 95 HOH HOH . H 4 HOH B 47 447 96 HOH HOH . H 4 HOH B 48 448 99 HOH HOH . H 4 HOH B 49 449 101 HOH HOH . H 4 HOH B 50 450 102 HOH HOH . H 4 HOH B 51 451 105 HOH HOH . H 4 HOH B 52 452 106 HOH HOH . H 4 HOH B 53 453 117 HOH HOH . H 4 HOH B 54 454 118 HOH HOH . H 4 HOH B 55 455 120 HOH HOH . H 4 HOH B 56 456 124 HOH HOH . H 4 HOH B 57 457 125 HOH HOH . H 4 HOH B 58 458 128 HOH HOH . H 4 HOH B 59 459 130 HOH HOH . H 4 HOH B 60 460 133 HOH HOH . H 4 HOH B 61 461 139 HOH HOH . H 4 HOH B 62 462 142 HOH HOH . H 4 HOH B 63 463 146 HOH HOH . H 4 HOH B 64 464 149 HOH HOH . H 4 HOH B 65 465 150 HOH HOH . H 4 HOH B 66 466 151 HOH HOH . H 4 HOH B 67 467 152 HOH HOH . H 4 HOH B 68 468 154 HOH HOH . H 4 HOH B 69 469 155 HOH HOH . H 4 HOH B 70 470 156 HOH HOH . H 4 HOH B 71 471 157 HOH HOH . H 4 HOH B 72 472 159 HOH HOH . I 4 HOH A 1 401 3 HOH HOH . I 4 HOH A 2 402 4 HOH HOH . I 4 HOH A 3 403 5 HOH HOH . I 4 HOH A 4 404 7 HOH HOH . I 4 HOH A 5 405 8 HOH HOH . I 4 HOH A 6 406 9 HOH HOH . I 4 HOH A 7 407 12 HOH HOH . I 4 HOH A 8 408 15 HOH HOH . I 4 HOH A 9 409 18 HOH HOH . I 4 HOH A 10 410 19 HOH HOH . I 4 HOH A 11 411 20 HOH HOH . I 4 HOH A 12 412 24 HOH HOH . I 4 HOH A 13 413 26 HOH HOH . I 4 HOH A 14 414 27 HOH HOH . I 4 HOH A 15 415 28 HOH HOH . I 4 HOH A 16 416 31 HOH HOH . I 4 HOH A 17 417 32 HOH HOH . I 4 HOH A 18 418 34 HOH HOH . I 4 HOH A 19 419 37 HOH HOH . I 4 HOH A 20 420 38 HOH HOH . I 4 HOH A 21 421 40 HOH HOH . I 4 HOH A 22 422 41 HOH HOH . I 4 HOH A 23 423 43 HOH HOH . I 4 HOH A 24 424 45 HOH HOH . I 4 HOH A 25 425 46 HOH HOH . I 4 HOH A 26 426 47 HOH HOH . I 4 HOH A 27 427 54 HOH HOH . I 4 HOH A 28 428 57 HOH HOH . I 4 HOH A 29 429 58 HOH HOH . I 4 HOH A 30 430 59 HOH HOH . I 4 HOH A 31 431 60 HOH HOH . I 4 HOH A 32 432 61 HOH HOH . I 4 HOH A 33 433 64 HOH HOH . I 4 HOH A 34 434 67 HOH HOH . I 4 HOH A 35 435 69 HOH HOH . I 4 HOH A 36 436 70 HOH HOH . I 4 HOH A 37 437 71 HOH HOH . I 4 HOH A 38 438 74 HOH HOH . I 4 HOH A 39 439 77 HOH HOH . I 4 HOH A 40 440 79 HOH HOH . I 4 HOH A 41 441 80 HOH HOH . I 4 HOH A 42 442 81 HOH HOH . I 4 HOH A 43 443 84 HOH HOH . I 4 HOH A 44 444 86 HOH HOH . I 4 HOH A 45 445 88 HOH HOH . I 4 HOH A 46 446 90 HOH HOH . I 4 HOH A 47 447 91 HOH HOH . I 4 HOH A 48 448 92 HOH HOH . I 4 HOH A 49 449 93 HOH HOH . I 4 HOH A 50 450 97 HOH HOH . I 4 HOH A 51 451 98 HOH HOH . I 4 HOH A 52 452 100 HOH HOH . I 4 HOH A 53 453 103 HOH HOH . I 4 HOH A 54 454 104 HOH HOH . I 4 HOH A 55 455 107 HOH HOH . I 4 HOH A 56 456 108 HOH HOH . I 4 HOH A 57 457 109 HOH HOH . I 4 HOH A 58 458 110 HOH HOH . I 4 HOH A 59 459 111 HOH HOH . I 4 HOH A 60 460 112 HOH HOH . I 4 HOH A 61 461 113 HOH HOH . I 4 HOH A 62 462 114 HOH HOH . I 4 HOH A 63 463 115 HOH HOH . I 4 HOH A 64 464 116 HOH HOH . I 4 HOH A 65 465 119 HOH HOH . I 4 HOH A 66 466 121 HOH HOH . I 4 HOH A 67 467 122 HOH HOH . I 4 HOH A 68 468 123 HOH HOH . I 4 HOH A 69 469 127 HOH HOH . I 4 HOH A 70 470 129 HOH HOH . I 4 HOH A 71 471 131 HOH HOH . I 4 HOH A 72 472 132 HOH HOH . I 4 HOH A 73 473 134 HOH HOH . I 4 HOH A 74 474 135 HOH HOH . I 4 HOH A 75 475 136 HOH HOH . I 4 HOH A 76 476 137 HOH HOH . I 4 HOH A 77 477 138 HOH HOH . I 4 HOH A 78 478 140 HOH HOH . I 4 HOH A 79 479 141 HOH HOH . I 4 HOH A 80 480 143 HOH HOH . I 4 HOH A 81 481 144 HOH HOH . I 4 HOH A 82 482 145 HOH HOH . I 4 HOH A 83 483 147 HOH HOH . I 4 HOH A 84 484 148 HOH HOH . I 4 HOH A 85 485 153 HOH HOH . I 4 HOH A 86 486 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -28.365 -23.681 56.952 1 48.43 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . F 2 -29.251 -23.828 58.08 1 47.11 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . F 2 -27.102 -22.893 57.377 1 48.93 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . F 2 -27.542 -21.54 57.414 1 60.89 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . F 2 -26.566 -23.286 58.797 1 49.29 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . F 2 -26.678 -22.156 59.68 1 42.58 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #