data_4RE9
#
_model_server_result.job_id            z0PunEYWBSFQIEdzNTJHOA 
_model_server_result.datetime_utc      '2024-12-23 11:52:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4re9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1102}' 
#
_entry.id    4RE9 
#
_exptl.entry_id    4RE9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              447.462 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-fluoro-N-({1-[(2R)-4-(hydroxyamino)-1-(naphthalen-2-yl)-4-oxobutan-2-yl]-1H-1,2,3-triazol-5-yl}methyl)benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4RE9 
_cell.length_a            262.981 
_cell.length_b            262.981 
_cell.length_c            90.508 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RE9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,V 1 1 
B,M,N,O,P,Q,R,S,T,U,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc4 C ZN ZN . A ZN 1101 1_555 D O08 3M9 . A 3M9 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc5 B NE2 HIS 79 B HIS 108 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc6 B NE2 HIS 83 B HIS 112 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc7 B OE1 GLU 160 B GLU 189 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc8 M ZN ZN . B ZN 1101 1_555 N O08 3M9 . B 3M9 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
#
_chem_comp.formula           'C24 H22 F N5 O3' 
_chem_comp.formula_weight    447.462 
_chem_comp.id                3M9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-fluoro-N-({1-[(2R)-4-(hydroxyamino)-1-(naphthalen-2-yl)-4-oxobutan-2-yl]-1H-1,2,3-triazol-5-yl}methyl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F33 C30 3M9 sing 38 n n 
C29 C30 3M9 doub 39 n y 
C29 C28 3M9 sing 40 n y 
C30 C31 3M9 sing 41 n y 
C28 C26 3M9 doub 42 n y 
C31 C32 3M9 doub 43 n y 
O27 C25 3M9 doub 44 n n 
C26 C32 3M9 sing 45 n y 
C26 C25 3M9 sing 46 n n 
C25 N24 3M9 sing 47 n n 
N24 C23 3M9 sing 48 n n 
C22 C21 3M9 doub 49 n y 
C22 C16 3M9 sing 50 n y 
C21 C20 3M9 sing 51 n y 
C23 C09 3M9 sing 52 n n 
C17 C16 3M9 doub 53 n y 
C17 C18 3M9 sing 54 n y 
C16 C15 3M9 sing 55 n y 
C18 C13 3M9 doub 56 n y 
C20 C19 3M9 doub 57 n y 
C09 C10 3M9 doub 58 n y 
C09 N02 3M9 sing 59 n y 
C10 N11 3M9 sing 60 n y 
C15 C19 3M9 sing 61 n y 
C15 C14 3M9 doub 62 n y 
C13 C14 3M9 sing 63 n y 
C13 C03 3M9 sing 64 n n 
N02 C01 3M9 sing 65 n n 
N02 N12 3M9 sing 66 n y 
N11 N12 3M9 doub 67 n y 
C01 C03 3M9 sing 68 n n 
C01 C04 3M9 sing 69 n n 
C04 C05 3M9 sing 70 n n 
C05 N06 3M9 sing 71 n n 
C05 O07 3M9 doub 72 n n 
N06 O08 3M9 sing 73 n n 
C01 H1 3M9 sing 74 n n 
C10 H2 3M9 sing 75 n n 
C23 H3 3M9 sing 76 n n 
C23 H4 3M9 sing 77 n n 
N24 H5 3M9 sing 78 n n 
C28 H6 3M9 sing 79 n n 
C29 H7 3M9 sing 80 n n 
C31 H8 3M9 sing 81 n n 
C32 H9 3M9 sing 82 n n 
C03 H10 3M9 sing 83 n n 
C03 H11 3M9 sing 84 n n 
C14 H12 3M9 sing 85 n n 
C17 H13 3M9 sing 86 n n 
C18 H14 3M9 sing 87 n n 
C19 H15 3M9 sing 88 n n 
C20 H16 3M9 sing 89 n n 
C21 H17 3M9 sing 90 n n 
C22 H18 3M9 sing 91 n n 
C04 H19 3M9 sing 92 n n 
C04 H20 3M9 sing 93 n n 
N06 H21 3M9 sing 94 n n 
O08 H22 3M9 sing 95 n n 
#
_atom_sites.entry_id                     4RE9 
_atom_sites.fract_transf_matrix[1][1]    0.003803 
_atom_sites.fract_transf_matrix[1][2]    0.002195 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004391 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011049 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 1101 1101 ZN ZN . 
D 3 3M9 A 1 1102 1102 3M9 3M9 . 
E 4 EPE A 1 1103 1103 EPE EPE . 
F 5 PEG A 1 1104 1104 PEG PEG . 
G 5 PEG A 1 1105 1105 PEG PEG . 
H 5 PEG A 1 1106 1106 PEG PEG . 
I 5 PEG A 1 1107 1107 PEG PEG . 
J 5 PEG A 1 1108 1108 PEG PEG . 
K 5 PEG A 1 1109 1109 PEG PEG . 
L 6 1PE A 1 1110 1110 1PE 1PE . 
M 2 ZN B 1 1101 1101 ZN ZN . 
N 3 3M9 B 1 1102 1102 3M9 3M9 . 
O 4 EPE B 1 1103 1103 EPE EPE . 
P 5 PEG B 1 1104 1104 PEG PEG . 
Q 5 PEG B 1 1105 1105 PEG PEG . 
R 5 PEG B 1 1106 1106 PEG PEG . 
S 5 PEG B 1 1107 1107 PEG PEG . 
T 6 1PE B 1 1108 1108 1PE 1PE . 
U 7 EDO B 1 1109 1109 EDO EDO . 
V 8 HOH A 1 1201 1201 HOH HOH . 
V 8 HOH A 2 1202 1202 HOH HOH . 
V 8 HOH A 3 1203 1203 HOH HOH . 
V 8 HOH A 4 1204 1204 HOH HOH . 
V 8 HOH A 5 1205 1205 HOH HOH . 
V 8 HOH A 6 1206 1206 HOH HOH . 
V 8 HOH A 7 1207 1207 HOH HOH . 
V 8 HOH A 8 1208 1208 HOH HOH . 
V 8 HOH A 9 1209 1209 HOH HOH . 
V 8 HOH A 10 1210 1210 HOH HOH . 
V 8 HOH A 11 1211 1211 HOH HOH . 
V 8 HOH A 12 1212 1212 HOH HOH . 
V 8 HOH A 13 1213 1213 HOH HOH . 
V 8 HOH A 14 1214 1214 HOH HOH . 
V 8 HOH A 15 1215 1215 HOH HOH . 
V 8 HOH A 16 1216 1216 HOH HOH . 
V 8 HOH A 17 1217 1217 HOH HOH . 
V 8 HOH A 18 1218 1218 HOH HOH . 
V 8 HOH A 19 1219 1219 HOH HOH . 
V 8 HOH A 20 1220 1220 HOH HOH . 
V 8 HOH A 21 1221 1221 HOH HOH . 
V 8 HOH A 22 1222 1222 HOH HOH . 
V 8 HOH A 23 1223 1223 HOH HOH . 
V 8 HOH A 24 1224 1224 HOH HOH . 
V 8 HOH A 25 1225 1225 HOH HOH . 
V 8 HOH A 26 1226 1226 HOH HOH . 
V 8 HOH A 27 1227 1227 HOH HOH . 
V 8 HOH A 28 1228 1228 HOH HOH . 
V 8 HOH A 29 1229 1229 HOH HOH . 
V 8 HOH A 30 1230 1230 HOH HOH . 
V 8 HOH A 31 1231 1231 HOH HOH . 
V 8 HOH A 32 1232 1232 HOH HOH . 
W 8 HOH B 1 1201 1201 HOH HOH . 
W 8 HOH B 2 1202 1202 HOH HOH . 
W 8 HOH B 3 1203 1203 HOH HOH . 
W 8 HOH B 4 1204 1204 HOH HOH . 
W 8 HOH B 5 1205 1205 HOH HOH . 
W 8 HOH B 6 1206 1206 HOH HOH . 
W 8 HOH B 7 1207 1207 HOH HOH . 
W 8 HOH B 8 1208 1208 HOH HOH . 
W 8 HOH B 9 1209 1209 HOH HOH . 
W 8 HOH B 10 1210 1210 HOH HOH . 
W 8 HOH B 11 1211 1211 HOH HOH . 
W 8 HOH B 12 1212 1212 HOH HOH . 
W 8 HOH B 13 1213 1213 HOH HOH . 
W 8 HOH B 14 1214 1214 HOH HOH . 
W 8 HOH B 15 1215 1215 HOH HOH . 
W 8 HOH B 16 1216 1216 HOH HOH . 
W 8 HOH B 17 1217 1217 HOH HOH . 
W 8 HOH B 18 1218 1218 HOH HOH . 
W 8 HOH B 19 1219 1219 HOH HOH . 
W 8 HOH B 20 1220 1220 HOH HOH . 
W 8 HOH B 21 1221 1221 HOH HOH . 
W 8 HOH B 22 1222 1222 HOH HOH . 
W 8 HOH B 23 1223 1223 HOH HOH . 
W 8 HOH B 24 1224 1224 HOH HOH . 
W 8 HOH B 25 1225 1225 HOH HOH . 
W 8 HOH B 26 1226 1226 HOH HOH . 
W 8 HOH B 27 1227 1227 HOH HOH . 
W 8 HOH B 28 1228 1228 HOH HOH . 
W 8 HOH B 29 1229 1229 HOH HOH . 
W 8 HOH B 30 1230 1230 HOH HOH . 
W 8 HOH B 31 1231 1231 HOH HOH . 
W 8 HOH B 32 1232 1232 HOH HOH . 
W 8 HOH B 33 1233 1233 HOH HOH . 
W 8 HOH B 34 1234 1234 HOH HOH . 
W 8 HOH B 35 1235 1235 HOH HOH . 
W 8 HOH B 36 1236 1236 HOH HOH . 
W 8 HOH B 37 1237 1237 HOH HOH . 
W 8 HOH B 38 1238 1238 HOH HOH . 
W 8 HOH B 39 1239 1239 HOH HOH . 
W 8 HOH B 40 1240 1240 HOH HOH . 
W 8 HOH B 41 1241 1241 HOH HOH . 
W 8 HOH B 42 1242 1242 HOH HOH . 
W 8 HOH B 43 1243 1243 HOH HOH . 
W 8 HOH B 44 1244 1244 HOH HOH . 
W 8 HOH B 45 1245 1245 HOH HOH . 
W 8 HOH B 46 1246 1246 HOH HOH . 
W 8 HOH B 47 1247 1247 HOH HOH . 
W 8 HOH B 48 1248 1248 HOH HOH . 
W 8 HOH B 49 1249 1249 HOH HOH . 
W 8 HOH B 50 1250 1250 HOH HOH . 
W 8 HOH B 51 1251 1251 HOH HOH . 
W 8 HOH B 52 1252 1252 HOH HOH . 
W 8 HOH B 53 1253 1253 HOH HOH . 
W 8 HOH B 54 1254 1254 HOH HOH . 
W 8 HOH B 55 1255 1255 HOH HOH . 
W 8 HOH B 56 1256 1256 HOH HOH . 
W 8 HOH B 57 1257 1257 HOH HOH . 
W 8 HOH B 58 1258 1258 HOH HOH . 
W 8 HOH B 59 1259 1259 HOH HOH . 
W 8 HOH B 60 1260 1260 HOH HOH . 
W 8 HOH B 61 1261 1261 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 3M9 . . . D 3 82.373 141.01 63.982 1 97.41 ? C01 3M9 1102 A 1 
HETATM 2 N N02 3M9 . . . D 3 82.312 141.804 62.788 1 105.54 ? N02 3M9 1102 A 1 
HETATM 3 C C09 3M9 . . . D 3 83.136 142.887 62.47 1 94.48 ? C09 3M9 1102 A 1 
HETATM 4 C C10 3M9 . . . D 3 82.683 143.349 61.19 1 77.24 ? C10 3M9 1102 A 1 
HETATM 5 N N11 3M9 . . . D 3 81.642 142.529 60.844 1 70.52 ? N11 3M9 1102 A 1 
HETATM 6 N N12 3M9 . . . D 3 81.451 141.636 61.81 1 79.55 ? N12 3M9 1102 A 1 
HETATM 7 C C23 3M9 . . . D 3 84.282 143.488 63.268 1 79.24 ? C23 3M9 1102 A 1 
HETATM 8 N N24 3M9 . . . D 3 84.232 144.928 63.077 1 71.8 ? N24 3M9 1102 A 1 
HETATM 9 C C25 3M9 . . . D 3 85.317 145.888 63.262 1 94.35 ? C25 3M9 1102 A 1 
HETATM 10 C C26 3M9 . . . D 3 86.762 145.551 63.714 1 98.26 ? C26 3M9 1102 A 1 
HETATM 11 O O27 3M9 . . . D 3 85.064 147.071 63.051 1 83.52 ? O27 3M9 1102 A 1 
HETATM 12 C C28 3M9 . . . D 3 87.79 146.47 63.364 1 79.03 ? C28 3M9 1102 A 1 
HETATM 13 C C29 3M9 . . . D 3 89.127 146.237 63.743 1 65.32 ? C29 3M9 1102 A 1 
HETATM 14 C C30 3M9 . . . D 3 89.434 145.111 64.472 1 79.22 ? C30 3M9 1102 A 1 
HETATM 15 C C31 3M9 . . . D 3 88.42 144.187 64.834 1 78.93 ? C31 3M9 1102 A 1 
HETATM 16 C C32 3M9 . . . D 3 87.072 144.42 64.449 1 93.02 ? C32 3M9 1102 A 1 
HETATM 17 F F33 3M9 . . . D 3 90.718 144.9 64.84 1 66.63 ? F33 3M9 1102 A 1 
HETATM 18 C C03 3M9 . . . D 3 83.299 139.775 63.892 1 79.26 ? C03 3M9 1102 A 1 
HETATM 19 C C13 3M9 . . . D 3 84.54 139.846 64.805 1 92.36 ? C13 3M9 1102 A 1 
HETATM 20 C C14 3M9 . . . D 3 85.212 138.668 65.162 1 102.39 ? C14 3M9 1102 A 1 
HETATM 21 C C15 3M9 . . . D 3 86.378 138.711 66.005 1 114.29 ? C15 3M9 1102 A 1 
HETATM 22 C C16 3M9 . . . D 3 86.845 139.946 66.472 1 134.29 ? C16 3M9 1102 A 1 
HETATM 23 C C17 3M9 . . . D 3 86.164 141.147 66.109 1 117.03 ? C17 3M9 1102 A 1 
HETATM 24 C C18 3M9 . . . D 3 85.017 141.101 65.282 1 95.78 ? C18 3M9 1102 A 1 
HETATM 25 C C19 3M9 . . . D 3 87.061 137.509 66.368 1 91.81 ? C19 3M9 1102 A 1 
HETATM 26 C C20 3M9 . . . D 3 88.211 137.556 67.203 1 88.87 ? C20 3M9 1102 A 1 
HETATM 27 C C21 3M9 . . . D 3 88.686 138.804 67.678 1 101.52 ? C21 3M9 1102 A 1 
HETATM 28 C C22 3M9 . . . D 3 88.016 139.99 67.321 1 123.15 ? C22 3M9 1102 A 1 
HETATM 29 C C04 3M9 . . . D 3 81.02 140.694 64.559 1 95.4 ? C04 3M9 1102 A 1 
HETATM 30 C C05 3M9 . . . D 3 80.265 139.434 64.124 1 77.68 ? C05 3M9 1102 A 1 
HETATM 31 N N06 3M9 . . . D 3 78.878 139.288 64.459 1 62.53 ? N06 3M9 1102 A 1 
HETATM 32 O O07 3M9 . . . D 3 80.798 138.523 63.497 1 84.37 ? O07 3M9 1102 A 1 
HETATM 33 O O08 3M9 . . . D 3 78.207 138.158 64.065 1 58.7 ? O08 3M9 1102 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    96 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           33 
#