data_4RE9 # _model_server_result.job_id gThXyFMOZ11ispRNeb6B_Q _model_server_result.datetime_utc '2024-12-23 12:01:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4re9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1102}' # _entry.id 4RE9 # _exptl.entry_id 4RE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-fluoro-N-({1-[(2R)-4-(hydroxyamino)-1-(naphthalen-2-yl)-4-oxobutan-2-yl]-1H-1,2,3-triazol-5-yl}methyl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RE9 _cell.length_a 262.981 _cell.length_b 262.981 _cell.length_c 90.508 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,V 1 1 B,M,N,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc4 C ZN ZN . A ZN 1101 1_555 D O08 3M9 . A 3M9 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 B NE2 HIS 79 B HIS 108 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 B NE2 HIS 83 B HIS 112 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc7 B OE1 GLU 160 B GLU 189 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc8 M ZN ZN . B ZN 1101 1_555 N O08 3M9 . B 3M9 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C24 H22 F N5 O3' _chem_comp.formula_weight 447.462 _chem_comp.id 3M9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-fluoro-N-({1-[(2R)-4-(hydroxyamino)-1-(naphthalen-2-yl)-4-oxobutan-2-yl]-1H-1,2,3-triazol-5-yl}methyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F33 C30 3M9 sing 38 n n C29 C30 3M9 doub 39 n y C29 C28 3M9 sing 40 n y C30 C31 3M9 sing 41 n y C28 C26 3M9 doub 42 n y C31 C32 3M9 doub 43 n y O27 C25 3M9 doub 44 n n C26 C32 3M9 sing 45 n y C26 C25 3M9 sing 46 n n C25 N24 3M9 sing 47 n n N24 C23 3M9 sing 48 n n C22 C21 3M9 doub 49 n y C22 C16 3M9 sing 50 n y C21 C20 3M9 sing 51 n y C23 C09 3M9 sing 52 n n C17 C16 3M9 doub 53 n y C17 C18 3M9 sing 54 n y C16 C15 3M9 sing 55 n y C18 C13 3M9 doub 56 n y C20 C19 3M9 doub 57 n y C09 C10 3M9 doub 58 n y C09 N02 3M9 sing 59 n y C10 N11 3M9 sing 60 n y C15 C19 3M9 sing 61 n y C15 C14 3M9 doub 62 n y C13 C14 3M9 sing 63 n y C13 C03 3M9 sing 64 n n N02 C01 3M9 sing 65 n n N02 N12 3M9 sing 66 n y N11 N12 3M9 doub 67 n y C01 C03 3M9 sing 68 n n C01 C04 3M9 sing 69 n n C04 C05 3M9 sing 70 n n C05 N06 3M9 sing 71 n n C05 O07 3M9 doub 72 n n N06 O08 3M9 sing 73 n n C01 H1 3M9 sing 74 n n C10 H2 3M9 sing 75 n n C23 H3 3M9 sing 76 n n C23 H4 3M9 sing 77 n n N24 H5 3M9 sing 78 n n C28 H6 3M9 sing 79 n n C29 H7 3M9 sing 80 n n C31 H8 3M9 sing 81 n n C32 H9 3M9 sing 82 n n C03 H10 3M9 sing 83 n n C03 H11 3M9 sing 84 n n C14 H12 3M9 sing 85 n n C17 H13 3M9 sing 86 n n C18 H14 3M9 sing 87 n n C19 H15 3M9 sing 88 n n C20 H16 3M9 sing 89 n n C21 H17 3M9 sing 90 n n C22 H18 3M9 sing 91 n n C04 H19 3M9 sing 92 n n C04 H20 3M9 sing 93 n n N06 H21 3M9 sing 94 n n O08 H22 3M9 sing 95 n n # _atom_sites.entry_id 4RE9 _atom_sites.fract_transf_matrix[1][1] 0.003803 _atom_sites.fract_transf_matrix[1][2] 0.002195 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1101 1101 ZN ZN . D 3 3M9 A 1 1102 1102 3M9 3M9 . E 4 EPE A 1 1103 1103 EPE EPE . F 5 PEG A 1 1104 1104 PEG PEG . G 5 PEG A 1 1105 1105 PEG PEG . H 5 PEG A 1 1106 1106 PEG PEG . I 5 PEG A 1 1107 1107 PEG PEG . J 5 PEG A 1 1108 1108 PEG PEG . K 5 PEG A 1 1109 1109 PEG PEG . L 6 1PE A 1 1110 1110 1PE 1PE . M 2 ZN B 1 1101 1101 ZN ZN . N 3 3M9 B 1 1102 1102 3M9 3M9 . O 4 EPE B 1 1103 1103 EPE EPE . P 5 PEG B 1 1104 1104 PEG PEG . Q 5 PEG B 1 1105 1105 PEG PEG . R 5 PEG B 1 1106 1106 PEG PEG . S 5 PEG B 1 1107 1107 PEG PEG . T 6 1PE B 1 1108 1108 1PE 1PE . U 7 EDO B 1 1109 1109 EDO EDO . V 8 HOH A 1 1201 1201 HOH HOH . V 8 HOH A 2 1202 1202 HOH HOH . V 8 HOH A 3 1203 1203 HOH HOH . V 8 HOH A 4 1204 1204 HOH HOH . V 8 HOH A 5 1205 1205 HOH HOH . V 8 HOH A 6 1206 1206 HOH HOH . V 8 HOH A 7 1207 1207 HOH HOH . V 8 HOH A 8 1208 1208 HOH HOH . V 8 HOH A 9 1209 1209 HOH HOH . V 8 HOH A 10 1210 1210 HOH HOH . V 8 HOH A 11 1211 1211 HOH HOH . V 8 HOH A 12 1212 1212 HOH HOH . V 8 HOH A 13 1213 1213 HOH HOH . V 8 HOH A 14 1214 1214 HOH HOH . V 8 HOH A 15 1215 1215 HOH HOH . V 8 HOH A 16 1216 1216 HOH HOH . V 8 HOH A 17 1217 1217 HOH HOH . V 8 HOH A 18 1218 1218 HOH HOH . V 8 HOH A 19 1219 1219 HOH HOH . V 8 HOH A 20 1220 1220 HOH HOH . V 8 HOH A 21 1221 1221 HOH HOH . V 8 HOH A 22 1222 1222 HOH HOH . V 8 HOH A 23 1223 1223 HOH HOH . V 8 HOH A 24 1224 1224 HOH HOH . V 8 HOH A 25 1225 1225 HOH HOH . V 8 HOH A 26 1226 1226 HOH HOH . V 8 HOH A 27 1227 1227 HOH HOH . V 8 HOH A 28 1228 1228 HOH HOH . V 8 HOH A 29 1229 1229 HOH HOH . V 8 HOH A 30 1230 1230 HOH HOH . V 8 HOH A 31 1231 1231 HOH HOH . V 8 HOH A 32 1232 1232 HOH HOH . W 8 HOH B 1 1201 1201 HOH HOH . W 8 HOH B 2 1202 1202 HOH HOH . W 8 HOH B 3 1203 1203 HOH HOH . W 8 HOH B 4 1204 1204 HOH HOH . W 8 HOH B 5 1205 1205 HOH HOH . W 8 HOH B 6 1206 1206 HOH HOH . W 8 HOH B 7 1207 1207 HOH HOH . W 8 HOH B 8 1208 1208 HOH HOH . W 8 HOH B 9 1209 1209 HOH HOH . W 8 HOH B 10 1210 1210 HOH HOH . W 8 HOH B 11 1211 1211 HOH HOH . W 8 HOH B 12 1212 1212 HOH HOH . W 8 HOH B 13 1213 1213 HOH HOH . W 8 HOH B 14 1214 1214 HOH HOH . W 8 HOH B 15 1215 1215 HOH HOH . W 8 HOH B 16 1216 1216 HOH HOH . W 8 HOH B 17 1217 1217 HOH HOH . W 8 HOH B 18 1218 1218 HOH HOH . W 8 HOH B 19 1219 1219 HOH HOH . W 8 HOH B 20 1220 1220 HOH HOH . W 8 HOH B 21 1221 1221 HOH HOH . W 8 HOH B 22 1222 1222 HOH HOH . W 8 HOH B 23 1223 1223 HOH HOH . W 8 HOH B 24 1224 1224 HOH HOH . W 8 HOH B 25 1225 1225 HOH HOH . W 8 HOH B 26 1226 1226 HOH HOH . W 8 HOH B 27 1227 1227 HOH HOH . W 8 HOH B 28 1228 1228 HOH HOH . W 8 HOH B 29 1229 1229 HOH HOH . W 8 HOH B 30 1230 1230 HOH HOH . W 8 HOH B 31 1231 1231 HOH HOH . W 8 HOH B 32 1232 1232 HOH HOH . W 8 HOH B 33 1233 1233 HOH HOH . W 8 HOH B 34 1234 1234 HOH HOH . W 8 HOH B 35 1235 1235 HOH HOH . W 8 HOH B 36 1236 1236 HOH HOH . W 8 HOH B 37 1237 1237 HOH HOH . W 8 HOH B 38 1238 1238 HOH HOH . W 8 HOH B 39 1239 1239 HOH HOH . W 8 HOH B 40 1240 1240 HOH HOH . W 8 HOH B 41 1241 1241 HOH HOH . W 8 HOH B 42 1242 1242 HOH HOH . W 8 HOH B 43 1243 1243 HOH HOH . W 8 HOH B 44 1244 1244 HOH HOH . W 8 HOH B 45 1245 1245 HOH HOH . W 8 HOH B 46 1246 1246 HOH HOH . W 8 HOH B 47 1247 1247 HOH HOH . W 8 HOH B 48 1248 1248 HOH HOH . W 8 HOH B 49 1249 1249 HOH HOH . W 8 HOH B 50 1250 1250 HOH HOH . W 8 HOH B 51 1251 1251 HOH HOH . W 8 HOH B 52 1252 1252 HOH HOH . W 8 HOH B 53 1253 1253 HOH HOH . W 8 HOH B 54 1254 1254 HOH HOH . W 8 HOH B 55 1255 1255 HOH HOH . W 8 HOH B 56 1256 1256 HOH HOH . W 8 HOH B 57 1257 1257 HOH HOH . W 8 HOH B 58 1258 1258 HOH HOH . W 8 HOH B 59 1259 1259 HOH HOH . W 8 HOH B 60 1260 1260 HOH HOH . W 8 HOH B 61 1261 1261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 3M9 . . . N 3 152.515 120.651 101.239 1 80.64 ? C01 3M9 1102 B 1 HETATM 2 N N02 3M9 . . . N 3 153.763 121.202 100.795 1 91.46 ? N02 3M9 1102 B 1 HETATM 3 C C09 3M9 . . . N 3 154.17 121.372 99.467 1 92.11 ? C09 3M9 1102 B 1 HETATM 4 C C10 3M9 . . . N 3 155.483 121.952 99.561 1 91.66 ? C10 3M9 1102 B 1 HETATM 5 N N11 3M9 . . . N 3 155.757 122.08 100.899 1 74.63 ? N11 3M9 1102 B 1 HETATM 6 N N12 3M9 . . . N 3 154.719 121.626 101.592 1 71.98 ? N12 3M9 1102 B 1 HETATM 7 C C23 3M9 . . . N 3 153.428 121.039 98.172 1 77.16 ? C23 3M9 1102 B 1 HETATM 8 N N24 3M9 . . . N 3 154.405 120.776 97.115 1 85.93 ? N24 3M9 1102 B 1 HETATM 9 C C25 3M9 . . . N 3 154.28 120.972 95.664 1 83.61 ? C25 3M9 1102 B 1 HETATM 10 C C26 3M9 . . . N 3 153.04 121.486 94.893 1 84.16 ? C26 3M9 1102 B 1 HETATM 11 O O27 3M9 . . . N 3 155.246 120.684 94.963 1 69.01 ? O27 3M9 1102 B 1 HETATM 12 C C28 3M9 . . . N 3 153.253 121.898 93.549 1 68.37 ? C28 3M9 1102 B 1 HETATM 13 C C29 3M9 . . . N 3 152.181 122.376 92.763 1 56.71 ? C29 3M9 1102 B 1 HETATM 14 C C30 3M9 . . . N 3 150.916 122.426 93.304 1 71.56 ? C30 3M9 1102 B 1 HETATM 15 C C31 3M9 . . . N 3 150.687 122.01 94.643 1 82.17 ? C31 3M9 1102 B 1 HETATM 16 C C32 3M9 . . . N 3 151.768 121.534 95.437 1 86.73 ? C32 3M9 1102 B 1 HETATM 17 F F33 3M9 . . . N 3 149.897 122.868 92.535 1 52.59 ? F33 3M9 1102 B 1 HETATM 18 C C03 3M9 . . . N 3 151.447 121.726 101.535 1 57.7 ? C03 3M9 1102 B 1 HETATM 19 C C13 3M9 . . . N 3 150.318 121.82 100.494 1 64.75 ? C13 3M9 1102 B 1 HETATM 20 C C14 3M9 . . . N 3 149.108 122.427 100.861 1 75.92 ? C14 3M9 1102 B 1 HETATM 21 C C15 3M9 . . . N 3 148.028 122.548 99.918 1 95.82 ? C15 3M9 1102 B 1 HETATM 22 C C16 3M9 . . . N 3 148.191 122.05 98.616 1 110.05 ? C16 3M9 1102 B 1 HETATM 23 C C17 3M9 . . . N 3 149.423 121.431 98.238 1 86.88 ? C17 3M9 1102 B 1 HETATM 24 C C18 3M9 . . . N 3 150.484 121.314 99.173 1 73.15 ? C18 3M9 1102 B 1 HETATM 25 C C19 3M9 . . . N 3 146.794 123.17 100.3 1 72.76 ? C19 3M9 1102 B 1 HETATM 26 C C20 3M9 . . . N 3 145.722 123.288 99.37 1 72.02 ? C20 3M9 1102 B 1 HETATM 27 C C21 3M9 . . . N 3 145.883 122.785 98.053 1 84.15 ? C21 3M9 1102 B 1 HETATM 28 C C22 3M9 . . . N 3 147.098 122.174 97.672 1 110.38 ? C22 3M9 1102 B 1 HETATM 29 C C04 3M9 . . . N 3 152.653 119.624 102.34 1 70.23 ? C04 3M9 1102 B 1 HETATM 30 C C05 3M9 . . . N 3 152.662 119.999 103.833 1 65.33 ? C05 3M9 1102 B 1 HETATM 31 N N06 3M9 . . . N 3 153.524 119.27 104.724 1 68.31 ? N06 3M9 1102 B 1 HETATM 32 O O07 3M9 . . . N 3 151.946 120.876 104.315 1 65.62 ? O07 3M9 1102 B 1 HETATM 33 O O08 3M9 . . . N 3 153.57 119.561 106.063 1 48.53 ? O08 3M9 1102 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #