data_4RE9 # _model_server_result.job_id YBJAcxLk5-lgrrWLQLrY9Q _model_server_result.datetime_utc '2024-12-23 12:15:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4re9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1103}' # _entry.id 4RE9 # _exptl.entry_id 4RE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RE9 _cell.length_a 262.981 _cell.length_b 262.981 _cell.length_c 90.508 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,V 1 1 B,M,N,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc4 C ZN ZN . A ZN 1101 1_555 D O08 3M9 . A 3M9 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 B NE2 HIS 79 B HIS 108 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 B NE2 HIS 83 B HIS 112 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc7 B OE1 GLU 160 B GLU 189 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc8 M ZN ZN . B ZN 1101 1_555 N O08 3M9 . B 3M9 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 187 n n N1 C6 EPE sing 188 n n N1 C9 EPE sing 189 n n C2 C3 EPE sing 190 n n C2 H21 EPE sing 191 n n C2 H22 EPE sing 192 n n C3 N4 EPE sing 193 n n C3 H31 EPE sing 194 n n C3 H32 EPE sing 195 n n N4 C5 EPE sing 196 n n N4 C7 EPE sing 197 n n C5 C6 EPE sing 198 n n C5 H51 EPE sing 199 n n C5 H52 EPE sing 200 n n C6 H61 EPE sing 201 n n C6 H62 EPE sing 202 n n C7 C8 EPE sing 203 n n C7 H71 EPE sing 204 n n C7 H72 EPE sing 205 n n C8 O8 EPE sing 206 n n C8 H81 EPE sing 207 n n C8 H82 EPE sing 208 n n O8 HO8 EPE sing 209 n n C9 C10 EPE sing 210 n n C9 H91 EPE sing 211 n n C9 H92 EPE sing 212 n n C10 S EPE sing 213 n n C10 H101 EPE sing 214 n n C10 H102 EPE sing 215 n n S O1S EPE doub 216 n n S O2S EPE doub 217 n n S O3S EPE sing 218 n n O3S HOS3 EPE sing 219 n n # _atom_sites.entry_id 4RE9 _atom_sites.fract_transf_matrix[1][1] 0.003803 _atom_sites.fract_transf_matrix[1][2] 0.002195 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1101 1101 ZN ZN . D 3 3M9 A 1 1102 1102 3M9 3M9 . E 4 EPE A 1 1103 1103 EPE EPE . F 5 PEG A 1 1104 1104 PEG PEG . G 5 PEG A 1 1105 1105 PEG PEG . H 5 PEG A 1 1106 1106 PEG PEG . I 5 PEG A 1 1107 1107 PEG PEG . J 5 PEG A 1 1108 1108 PEG PEG . K 5 PEG A 1 1109 1109 PEG PEG . L 6 1PE A 1 1110 1110 1PE 1PE . M 2 ZN B 1 1101 1101 ZN ZN . N 3 3M9 B 1 1102 1102 3M9 3M9 . O 4 EPE B 1 1103 1103 EPE EPE . P 5 PEG B 1 1104 1104 PEG PEG . Q 5 PEG B 1 1105 1105 PEG PEG . R 5 PEG B 1 1106 1106 PEG PEG . S 5 PEG B 1 1107 1107 PEG PEG . T 6 1PE B 1 1108 1108 1PE 1PE . U 7 EDO B 1 1109 1109 EDO EDO . V 8 HOH A 1 1201 1201 HOH HOH . V 8 HOH A 2 1202 1202 HOH HOH . V 8 HOH A 3 1203 1203 HOH HOH . V 8 HOH A 4 1204 1204 HOH HOH . V 8 HOH A 5 1205 1205 HOH HOH . V 8 HOH A 6 1206 1206 HOH HOH . V 8 HOH A 7 1207 1207 HOH HOH . V 8 HOH A 8 1208 1208 HOH HOH . V 8 HOH A 9 1209 1209 HOH HOH . V 8 HOH A 10 1210 1210 HOH HOH . V 8 HOH A 11 1211 1211 HOH HOH . V 8 HOH A 12 1212 1212 HOH HOH . V 8 HOH A 13 1213 1213 HOH HOH . V 8 HOH A 14 1214 1214 HOH HOH . V 8 HOH A 15 1215 1215 HOH HOH . V 8 HOH A 16 1216 1216 HOH HOH . V 8 HOH A 17 1217 1217 HOH HOH . V 8 HOH A 18 1218 1218 HOH HOH . V 8 HOH A 19 1219 1219 HOH HOH . V 8 HOH A 20 1220 1220 HOH HOH . V 8 HOH A 21 1221 1221 HOH HOH . V 8 HOH A 22 1222 1222 HOH HOH . V 8 HOH A 23 1223 1223 HOH HOH . V 8 HOH A 24 1224 1224 HOH HOH . V 8 HOH A 25 1225 1225 HOH HOH . V 8 HOH A 26 1226 1226 HOH HOH . V 8 HOH A 27 1227 1227 HOH HOH . V 8 HOH A 28 1228 1228 HOH HOH . V 8 HOH A 29 1229 1229 HOH HOH . V 8 HOH A 30 1230 1230 HOH HOH . V 8 HOH A 31 1231 1231 HOH HOH . V 8 HOH A 32 1232 1232 HOH HOH . W 8 HOH B 1 1201 1201 HOH HOH . W 8 HOH B 2 1202 1202 HOH HOH . W 8 HOH B 3 1203 1203 HOH HOH . W 8 HOH B 4 1204 1204 HOH HOH . W 8 HOH B 5 1205 1205 HOH HOH . W 8 HOH B 6 1206 1206 HOH HOH . W 8 HOH B 7 1207 1207 HOH HOH . W 8 HOH B 8 1208 1208 HOH HOH . W 8 HOH B 9 1209 1209 HOH HOH . W 8 HOH B 10 1210 1210 HOH HOH . W 8 HOH B 11 1211 1211 HOH HOH . W 8 HOH B 12 1212 1212 HOH HOH . W 8 HOH B 13 1213 1213 HOH HOH . W 8 HOH B 14 1214 1214 HOH HOH . W 8 HOH B 15 1215 1215 HOH HOH . W 8 HOH B 16 1216 1216 HOH HOH . W 8 HOH B 17 1217 1217 HOH HOH . W 8 HOH B 18 1218 1218 HOH HOH . W 8 HOH B 19 1219 1219 HOH HOH . W 8 HOH B 20 1220 1220 HOH HOH . W 8 HOH B 21 1221 1221 HOH HOH . W 8 HOH B 22 1222 1222 HOH HOH . W 8 HOH B 23 1223 1223 HOH HOH . W 8 HOH B 24 1224 1224 HOH HOH . W 8 HOH B 25 1225 1225 HOH HOH . W 8 HOH B 26 1226 1226 HOH HOH . W 8 HOH B 27 1227 1227 HOH HOH . W 8 HOH B 28 1228 1228 HOH HOH . W 8 HOH B 29 1229 1229 HOH HOH . W 8 HOH B 30 1230 1230 HOH HOH . W 8 HOH B 31 1231 1231 HOH HOH . W 8 HOH B 32 1232 1232 HOH HOH . W 8 HOH B 33 1233 1233 HOH HOH . W 8 HOH B 34 1234 1234 HOH HOH . W 8 HOH B 35 1235 1235 HOH HOH . W 8 HOH B 36 1236 1236 HOH HOH . W 8 HOH B 37 1237 1237 HOH HOH . W 8 HOH B 38 1238 1238 HOH HOH . W 8 HOH B 39 1239 1239 HOH HOH . W 8 HOH B 40 1240 1240 HOH HOH . W 8 HOH B 41 1241 1241 HOH HOH . W 8 HOH B 42 1242 1242 HOH HOH . W 8 HOH B 43 1243 1243 HOH HOH . W 8 HOH B 44 1244 1244 HOH HOH . W 8 HOH B 45 1245 1245 HOH HOH . W 8 HOH B 46 1246 1246 HOH HOH . W 8 HOH B 47 1247 1247 HOH HOH . W 8 HOH B 48 1248 1248 HOH HOH . W 8 HOH B 49 1249 1249 HOH HOH . W 8 HOH B 50 1250 1250 HOH HOH . W 8 HOH B 51 1251 1251 HOH HOH . W 8 HOH B 52 1252 1252 HOH HOH . W 8 HOH B 53 1253 1253 HOH HOH . W 8 HOH B 54 1254 1254 HOH HOH . W 8 HOH B 55 1255 1255 HOH HOH . W 8 HOH B 56 1256 1256 HOH HOH . W 8 HOH B 57 1257 1257 HOH HOH . W 8 HOH B 58 1258 1258 HOH HOH . W 8 HOH B 59 1259 1259 HOH HOH . W 8 HOH B 60 1260 1260 HOH HOH . W 8 HOH B 61 1261 1261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . E 4 101.246 143.116 83.497 1 60.02 ? N1 EPE 1103 A 1 HETATM 2 C C2 EPE . . . E 4 100.284 143.131 82.385 1 73.48 ? C2 EPE 1103 A 1 HETATM 3 C C3 EPE . . . E 4 100.182 144.534 81.798 1 75.68 ? C3 EPE 1103 A 1 HETATM 4 N N4 EPE . . . E 4 99.893 145.528 82.821 1 71.58 ? N4 EPE 1103 A 1 HETATM 5 C C5 EPE . . . E 4 100.643 145.436 84.066 1 69.58 ? C5 EPE 1103 A 1 HETATM 6 C C6 EPE . . . E 4 100.789 144.005 84.576 1 61.46 ? C6 EPE 1103 A 1 HETATM 7 C C7 EPE . . . E 4 99.454 146.852 82.399 1 64.26 ? C7 EPE 1103 A 1 HETATM 8 C C8 EPE . . . E 4 98.158 146.846 81.584 1 76.76 ? C8 EPE 1103 A 1 HETATM 9 O O8 EPE . . . E 4 98.363 147.275 80.247 1 68.53 ? O8 EPE 1103 A 1 HETATM 10 C C9 EPE . . . E 4 101.352 141.734 83.988 1 65.08 ? C9 EPE 1103 A 1 HETATM 11 C C10 EPE . . . E 4 102.603 141.09 83.399 1 71.8 ? C10 EPE 1103 A 1 HETATM 12 S S EPE . . . E 4 102.73 139.302 83.681 1 65.3 ? S EPE 1103 A 1 HETATM 13 O O1S EPE . . . E 4 101.482 138.641 83.297 1 55.49 ? O1S EPE 1103 A 1 HETATM 14 O O2S EPE . . . E 4 103.836 138.82 82.862 1 61.5 ? O2S EPE 1103 A 1 HETATM 15 O O3S EPE . . . E 4 103.049 139.026 85.081 1 65.35 ? O3S EPE 1103 A 1 HETATM 16 H H21 EPE . . . E 4 99.305 142.812 82.744 1 88.17 ? H21 EPE 1103 A 1 HETATM 17 H H22 EPE . . . E 4 100.605 142.433 81.613 1 88.17 ? H22 EPE 1103 A 1 HETATM 18 H H31 EPE . . . E 4 99.395 144.553 81.044 1 90.82 ? H31 EPE 1103 A 1 HETATM 19 H H32 EPE . . . E 4 101.121 144.787 81.305 1 90.82 ? H32 EPE 1103 A 1 HETATM 20 H H51 EPE . . . E 4 100.142 146.035 84.827 1 83.49 ? H51 EPE 1103 A 1 HETATM 21 H H52 EPE . . . E 4 101.635 145.862 83.915 1 83.49 ? H52 EPE 1103 A 1 HETATM 22 H H61 EPE . . . E 4 99.83 143.653 84.957 1 73.75 ? H61 EPE 1103 A 1 HETATM 23 H H62 EPE . . . E 4 101.506 143.981 85.397 1 73.75 ? H62 EPE 1103 A 1 HETATM 24 H H71 EPE . . . E 4 100.243 147.311 81.803 1 77.11 ? H71 EPE 1103 A 1 HETATM 25 H H72 EPE . . . E 4 99.311 147.474 83.283 1 77.11 ? H72 EPE 1103 A 1 HETATM 26 H H81 EPE . . . E 4 97.43 147.501 82.063 1 92.11 ? H81 EPE 1103 A 1 HETATM 27 H H82 EPE . . . E 4 97.743 145.839 81.578 1 92.11 ? H82 EPE 1103 A 1 HETATM 28 H HO8 EPE . . . E 4 99.31 147.492 80.115 1 82.24 ? HO8 EPE 1103 A 1 HETATM 29 H H91 EPE . . . E 4 101.412 141.732 85.076 1 78.1 ? H91 EPE 1103 A 1 HETATM 30 H H92 EPE . . . E 4 100.47 141.167 83.692 1 78.1 ? H92 EPE 1103 A 1 HETATM 31 H H101 EPE . . . E 4 102.62 141.277 82.325 1 86.16 ? H101 EPE 1103 A 1 HETATM 32 H H102 EPE . . . E 4 103.481 141.575 83.825 1 86.16 ? H102 EPE 1103 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #