data_4RE9 # _model_server_result.job_id DeQm35ixl7ThRS06p5o0UA _model_server_result.datetime_utc '2024-12-23 11:45:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4re9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1108}' # _entry.id 4RE9 # _exptl.entry_id 4RE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RE9 _cell.length_a 262.981 _cell.length_b 262.981 _cell.length_c 90.508 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,V 1 1 B,M,N,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc4 C ZN ZN . A ZN 1101 1_555 D O08 3M9 . A 3M9 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc5 B NE2 HIS 79 B HIS 108 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 B NE2 HIS 83 B HIS 112 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc7 B OE1 GLU 160 B GLU 189 1_555 M ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc8 M ZN ZN . B ZN 1101 1_555 N O08 3M9 . B 3M9 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4RE9 _atom_sites.fract_transf_matrix[1][1] 0.003803 _atom_sites.fract_transf_matrix[1][2] 0.002195 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1101 1101 ZN ZN . D 3 3M9 A 1 1102 1102 3M9 3M9 . E 4 EPE A 1 1103 1103 EPE EPE . F 5 PEG A 1 1104 1104 PEG PEG . G 5 PEG A 1 1105 1105 PEG PEG . H 5 PEG A 1 1106 1106 PEG PEG . I 5 PEG A 1 1107 1107 PEG PEG . J 5 PEG A 1 1108 1108 PEG PEG . K 5 PEG A 1 1109 1109 PEG PEG . L 6 1PE A 1 1110 1110 1PE 1PE . M 2 ZN B 1 1101 1101 ZN ZN . N 3 3M9 B 1 1102 1102 3M9 3M9 . O 4 EPE B 1 1103 1103 EPE EPE . P 5 PEG B 1 1104 1104 PEG PEG . Q 5 PEG B 1 1105 1105 PEG PEG . R 5 PEG B 1 1106 1106 PEG PEG . S 5 PEG B 1 1107 1107 PEG PEG . T 6 1PE B 1 1108 1108 1PE 1PE . U 7 EDO B 1 1109 1109 EDO EDO . V 8 HOH A 1 1201 1201 HOH HOH . V 8 HOH A 2 1202 1202 HOH HOH . V 8 HOH A 3 1203 1203 HOH HOH . V 8 HOH A 4 1204 1204 HOH HOH . V 8 HOH A 5 1205 1205 HOH HOH . V 8 HOH A 6 1206 1206 HOH HOH . V 8 HOH A 7 1207 1207 HOH HOH . V 8 HOH A 8 1208 1208 HOH HOH . V 8 HOH A 9 1209 1209 HOH HOH . V 8 HOH A 10 1210 1210 HOH HOH . V 8 HOH A 11 1211 1211 HOH HOH . V 8 HOH A 12 1212 1212 HOH HOH . V 8 HOH A 13 1213 1213 HOH HOH . V 8 HOH A 14 1214 1214 HOH HOH . V 8 HOH A 15 1215 1215 HOH HOH . V 8 HOH A 16 1216 1216 HOH HOH . V 8 HOH A 17 1217 1217 HOH HOH . V 8 HOH A 18 1218 1218 HOH HOH . V 8 HOH A 19 1219 1219 HOH HOH . V 8 HOH A 20 1220 1220 HOH HOH . V 8 HOH A 21 1221 1221 HOH HOH . V 8 HOH A 22 1222 1222 HOH HOH . V 8 HOH A 23 1223 1223 HOH HOH . V 8 HOH A 24 1224 1224 HOH HOH . V 8 HOH A 25 1225 1225 HOH HOH . V 8 HOH A 26 1226 1226 HOH HOH . V 8 HOH A 27 1227 1227 HOH HOH . V 8 HOH A 28 1228 1228 HOH HOH . V 8 HOH A 29 1229 1229 HOH HOH . V 8 HOH A 30 1230 1230 HOH HOH . V 8 HOH A 31 1231 1231 HOH HOH . V 8 HOH A 32 1232 1232 HOH HOH . W 8 HOH B 1 1201 1201 HOH HOH . W 8 HOH B 2 1202 1202 HOH HOH . W 8 HOH B 3 1203 1203 HOH HOH . W 8 HOH B 4 1204 1204 HOH HOH . W 8 HOH B 5 1205 1205 HOH HOH . W 8 HOH B 6 1206 1206 HOH HOH . W 8 HOH B 7 1207 1207 HOH HOH . W 8 HOH B 8 1208 1208 HOH HOH . W 8 HOH B 9 1209 1209 HOH HOH . W 8 HOH B 10 1210 1210 HOH HOH . W 8 HOH B 11 1211 1211 HOH HOH . W 8 HOH B 12 1212 1212 HOH HOH . W 8 HOH B 13 1213 1213 HOH HOH . W 8 HOH B 14 1214 1214 HOH HOH . W 8 HOH B 15 1215 1215 HOH HOH . W 8 HOH B 16 1216 1216 HOH HOH . W 8 HOH B 17 1217 1217 HOH HOH . W 8 HOH B 18 1218 1218 HOH HOH . W 8 HOH B 19 1219 1219 HOH HOH . W 8 HOH B 20 1220 1220 HOH HOH . W 8 HOH B 21 1221 1221 HOH HOH . W 8 HOH B 22 1222 1222 HOH HOH . W 8 HOH B 23 1223 1223 HOH HOH . W 8 HOH B 24 1224 1224 HOH HOH . W 8 HOH B 25 1225 1225 HOH HOH . W 8 HOH B 26 1226 1226 HOH HOH . W 8 HOH B 27 1227 1227 HOH HOH . W 8 HOH B 28 1228 1228 HOH HOH . W 8 HOH B 29 1229 1229 HOH HOH . W 8 HOH B 30 1230 1230 HOH HOH . W 8 HOH B 31 1231 1231 HOH HOH . W 8 HOH B 32 1232 1232 HOH HOH . W 8 HOH B 33 1233 1233 HOH HOH . W 8 HOH B 34 1234 1234 HOH HOH . W 8 HOH B 35 1235 1235 HOH HOH . W 8 HOH B 36 1236 1236 HOH HOH . W 8 HOH B 37 1237 1237 HOH HOH . W 8 HOH B 38 1238 1238 HOH HOH . W 8 HOH B 39 1239 1239 HOH HOH . W 8 HOH B 40 1240 1240 HOH HOH . W 8 HOH B 41 1241 1241 HOH HOH . W 8 HOH B 42 1242 1242 HOH HOH . W 8 HOH B 43 1243 1243 HOH HOH . W 8 HOH B 44 1244 1244 HOH HOH . W 8 HOH B 45 1245 1245 HOH HOH . W 8 HOH B 46 1246 1246 HOH HOH . W 8 HOH B 47 1247 1247 HOH HOH . W 8 HOH B 48 1248 1248 HOH HOH . W 8 HOH B 49 1249 1249 HOH HOH . W 8 HOH B 50 1250 1250 HOH HOH . W 8 HOH B 51 1251 1251 HOH HOH . W 8 HOH B 52 1252 1252 HOH HOH . W 8 HOH B 53 1253 1253 HOH HOH . W 8 HOH B 54 1254 1254 HOH HOH . W 8 HOH B 55 1255 1255 HOH HOH . W 8 HOH B 56 1256 1256 HOH HOH . W 8 HOH B 57 1257 1257 HOH HOH . W 8 HOH B 58 1258 1258 HOH HOH . W 8 HOH B 59 1259 1259 HOH HOH . W 8 HOH B 60 1260 1260 HOH HOH . W 8 HOH B 61 1261 1261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH3 1PE . . . T 6 125.905 121.306 108.027 1 58.01 ? OH3 1PE 1108 B 1 HETATM 2 C C13 1PE . . . T 6 125.485 118.959 107.797 1 78.24 ? C13 1PE 1108 B 1 HETATM 3 C C23 1PE . . . T 6 125.095 120.357 107.364 1 77.63 ? C23 1PE 1108 B 1 HETATM 4 O OH4 1PE . . . T 6 124.424 118.014 107.523 1 85.68 ? OH4 1PE 1108 B 1 HETATM 5 C C14 1PE . . . T 6 122.724 118.679 105.87 1 77.56 ? C14 1PE 1108 B 1 HETATM 6 C C24 1PE . . . T 6 124.024 117.887 106.141 1 89.46 ? C24 1PE 1108 B 1 HETATM 7 O OH5 1PE . . . T 6 121.997 118.043 104.839 1 82.38 ? OH5 1PE 1108 B 1 HETATM 8 C C15 1PE . . . T 6 120.445 119.176 103.372 1 63.91 ? C15 1PE 1108 B 1 HETATM 9 C C25 1PE . . . T 6 120.652 118.409 104.693 1 53.6 ? C25 1PE 1108 B 1 HETATM 10 O OH6 1PE . . . T 6 120.029 118.295 102.33 1 62.32 ? OH6 1PE 1108 B 1 HETATM 11 C C16 1PE . . . T 6 122.081 117.907 101.064 1 68.76 ? C16 1PE 1108 B 1 HETATM 12 C C26 1PE . . . T 6 120.688 118.479 101.065 1 66.18 ? C26 1PE 1108 B 1 HETATM 13 O OH7 1PE . . . T 6 122.86 118.526 100.013 1 49.32 ? OH7 1PE 1108 B 1 HETATM 14 H H131 1PE . . . T 6 126.308 118.683 107.301 1 93.88 ? H131 1PE 1108 B 1 HETATM 15 H H132 1PE . . . T 6 125.67 118.961 108.743 1 93.88 ? H132 1PE 1108 B 1 HETATM 16 H H231 1PE . . . T 6 124.166 120.515 107.586 1 93.16 ? H231 1PE 1108 B 1 HETATM 17 H H232 1PE . . . T 6 125.222 120.449 106.353 1 93.16 ? H232 1PE 1108 B 1 HETATM 18 H H141 1PE . . . T 6 122.187 118.701 106.676 1 93.08 ? H141 1PE 1108 B 1 HETATM 19 H H142 1PE . . . T 6 122.955 119.631 105.59 1 93.08 ? H142 1PE 1108 B 1 HETATM 20 H H241 1PE . . . T 6 124.75 118.242 105.554 1 107.36 ? H241 1PE 1108 B 1 HETATM 21 H H242 1PE . . . T 6 123.875 116.938 105.931 1 107.36 ? H242 1PE 1108 B 1 HETATM 22 H H151 1PE . . . T 6 119.756 119.871 103.503 1 76.69 ? H151 1PE 1108 B 1 HETATM 23 H H152 1PE . . . T 6 121.293 119.607 103.111 1 76.69 ? H152 1PE 1108 B 1 HETATM 24 H H251 1PE . . . T 6 120.098 117.605 104.688 1 64.32 ? H251 1PE 1108 B 1 HETATM 25 H H252 1PE . . . T 6 120.387 118.984 105.451 1 64.32 ? H252 1PE 1108 B 1 HETATM 26 H H161 1PE . . . T 6 122.517 118.087 101.952 1 82.51 ? H161 1PE 1108 B 1 HETATM 27 H H162 1PE . . . T 6 122.038 116.939 100.911 1 82.51 ? H162 1PE 1108 B 1 HETATM 28 H H261 1PE . . . T 6 120.177 118.048 100.385 1 79.41 ? H261 1PE 1108 B 1 HETATM 29 H H262 1PE . . . T 6 120.736 119.424 100.872 1 79.41 ? H262 1PE 1108 B 1 HETATM 30 H HO7 1PE . . . T 6 123.664 118.144 99.973 1 59.19 ? HO7 1PE 1108 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #