data_4REF # _model_server_result.job_id SMBL6qbG767ZOEBC6tE8_A _model_server_result.datetime_utc '2024-11-01 10:39:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ref # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 4REF # _exptl.entry_id 4REF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4REF _cell.length_a 74.2 _cell.length_b 76.843 _cell.length_c 128.079 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4REF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,H 1 1 B,D,E,F,G,I 2 1 A,B,C,D,E,F,G,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 4REF _atom_sites.fract_transf_matrix[1][1] 0.013477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 301 301 GOL GOL . D 2 GOL A 1 301 302 GOL GOL . E 3 3N0 A 1 302 1 3N0 440 . F 2 GOL A 1 303 1 GOL GOL . G 2 GOL A 1 304 2 GOL GOL . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 3 HOH HOH . H 4 HOH B 3 403 5 HOH HOH . H 4 HOH B 4 404 6 HOH HOH . H 4 HOH B 5 405 8 HOH HOH . H 4 HOH B 6 406 9 HOH HOH . H 4 HOH B 7 407 10 HOH HOH . H 4 HOH B 8 408 14 HOH HOH . H 4 HOH B 9 409 16 HOH HOH . H 4 HOH B 10 410 20 HOH HOH . H 4 HOH B 11 411 21 HOH HOH . H 4 HOH B 12 412 22 HOH HOH . H 4 HOH B 13 413 23 HOH HOH . H 4 HOH B 14 414 24 HOH HOH . H 4 HOH B 15 415 25 HOH HOH . H 4 HOH B 16 416 27 HOH HOH . H 4 HOH B 17 417 28 HOH HOH . H 4 HOH B 18 418 29 HOH HOH . H 4 HOH B 19 419 31 HOH HOH . H 4 HOH B 20 420 34 HOH HOH . H 4 HOH B 21 421 37 HOH HOH . H 4 HOH B 22 422 40 HOH HOH . H 4 HOH B 23 423 41 HOH HOH . H 4 HOH B 24 424 43 HOH HOH . H 4 HOH B 25 425 45 HOH HOH . H 4 HOH B 26 426 50 HOH HOH . H 4 HOH B 27 427 51 HOH HOH . H 4 HOH B 28 428 52 HOH HOH . H 4 HOH B 29 429 54 HOH HOH . H 4 HOH B 30 430 56 HOH HOH . H 4 HOH B 31 431 58 HOH HOH . H 4 HOH B 32 432 59 HOH HOH . H 4 HOH B 33 433 62 HOH HOH . H 4 HOH B 34 434 63 HOH HOH . H 4 HOH B 35 435 64 HOH HOH . H 4 HOH B 36 436 67 HOH HOH . H 4 HOH B 37 437 71 HOH HOH . H 4 HOH B 38 438 73 HOH HOH . H 4 HOH B 39 439 78 HOH HOH . H 4 HOH B 40 440 79 HOH HOH . H 4 HOH B 41 441 81 HOH HOH . H 4 HOH B 42 442 82 HOH HOH . H 4 HOH B 43 443 83 HOH HOH . H 4 HOH B 44 444 85 HOH HOH . H 4 HOH B 45 445 86 HOH HOH . H 4 HOH B 46 446 88 HOH HOH . H 4 HOH B 47 447 92 HOH HOH . H 4 HOH B 48 448 93 HOH HOH . H 4 HOH B 49 449 95 HOH HOH . H 4 HOH B 50 450 96 HOH HOH . H 4 HOH B 51 451 98 HOH HOH . H 4 HOH B 52 452 99 HOH HOH . H 4 HOH B 53 453 102 HOH HOH . H 4 HOH B 54 454 104 HOH HOH . H 4 HOH B 55 455 107 HOH HOH . H 4 HOH B 56 456 108 HOH HOH . H 4 HOH B 57 457 109 HOH HOH . H 4 HOH B 58 458 110 HOH HOH . H 4 HOH B 59 459 111 HOH HOH . H 4 HOH B 60 460 112 HOH HOH . H 4 HOH B 61 461 113 HOH HOH . H 4 HOH B 62 462 114 HOH HOH . H 4 HOH B 63 463 118 HOH HOH . H 4 HOH B 64 464 119 HOH HOH . H 4 HOH B 65 465 120 HOH HOH . H 4 HOH B 66 466 123 HOH HOH . H 4 HOH B 67 467 126 HOH HOH . H 4 HOH B 68 468 127 HOH HOH . H 4 HOH B 69 469 128 HOH HOH . H 4 HOH B 70 470 129 HOH HOH . H 4 HOH B 71 471 133 HOH HOH . H 4 HOH B 72 472 135 HOH HOH . H 4 HOH B 73 473 138 HOH HOH . H 4 HOH B 74 474 141 HOH HOH . H 4 HOH B 75 475 143 HOH HOH . H 4 HOH B 76 476 149 HOH HOH . H 4 HOH B 77 477 151 HOH HOH . H 4 HOH B 78 478 153 HOH HOH . H 4 HOH B 79 479 154 HOH HOH . H 4 HOH B 80 480 155 HOH HOH . H 4 HOH B 81 481 156 HOH HOH . H 4 HOH B 82 482 161 HOH HOH . H 4 HOH B 83 483 162 HOH HOH . H 4 HOH B 84 484 163 HOH HOH . H 4 HOH B 85 485 164 HOH HOH . H 4 HOH B 86 486 165 HOH HOH . H 4 HOH B 87 487 169 HOH HOH . H 4 HOH B 88 488 170 HOH HOH . H 4 HOH B 89 489 172 HOH HOH . H 4 HOH B 90 490 174 HOH HOH . H 4 HOH B 91 491 175 HOH HOH . H 4 HOH B 92 492 179 HOH HOH . H 4 HOH B 93 493 180 HOH HOH . H 4 HOH B 94 494 181 HOH HOH . H 4 HOH B 95 495 183 HOH HOH . H 4 HOH B 96 496 188 HOH HOH . H 4 HOH B 97 497 190 HOH HOH . H 4 HOH B 98 498 198 HOH HOH . H 4 HOH B 99 499 199 HOH HOH . H 4 HOH B 100 500 200 HOH HOH . H 4 HOH B 101 501 202 HOH HOH . H 4 HOH B 102 502 205 HOH HOH . H 4 HOH B 103 503 209 HOH HOH . H 4 HOH B 104 504 210 HOH HOH . H 4 HOH B 105 505 211 HOH HOH . H 4 HOH B 106 506 214 HOH HOH . H 4 HOH B 107 507 217 HOH HOH . H 4 HOH B 108 508 221 HOH HOH . H 4 HOH B 109 509 226 HOH HOH . H 4 HOH B 110 510 227 HOH HOH . H 4 HOH B 111 511 228 HOH HOH . H 4 HOH B 112 512 231 HOH HOH . H 4 HOH B 113 513 232 HOH HOH . H 4 HOH B 114 514 233 HOH HOH . H 4 HOH B 115 515 234 HOH HOH . H 4 HOH B 116 516 235 HOH HOH . H 4 HOH B 117 517 238 HOH HOH . H 4 HOH B 118 518 241 HOH HOH . H 4 HOH B 119 519 243 HOH HOH . H 4 HOH B 120 520 245 HOH HOH . H 4 HOH B 121 521 246 HOH HOH . H 4 HOH B 122 522 250 HOH HOH . H 4 HOH B 123 523 252 HOH HOH . H 4 HOH B 124 524 254 HOH HOH . H 4 HOH B 125 525 255 HOH HOH . H 4 HOH B 126 526 261 HOH HOH . H 4 HOH B 127 527 265 HOH HOH . H 4 HOH B 128 528 270 HOH HOH . H 4 HOH B 129 529 272 HOH HOH . H 4 HOH B 130 530 274 HOH HOH . H 4 HOH B 131 531 275 HOH HOH . H 4 HOH B 132 532 279 HOH HOH . H 4 HOH B 133 533 281 HOH HOH . H 4 HOH B 134 534 286 HOH HOH . H 4 HOH B 135 535 288 HOH HOH . H 4 HOH B 136 536 290 HOH HOH . H 4 HOH B 137 537 293 HOH HOH . H 4 HOH B 138 538 295 HOH HOH . H 4 HOH B 139 539 298 HOH HOH . H 4 HOH B 140 540 302 HOH HOH . H 4 HOH B 141 541 303 HOH HOH . H 4 HOH B 142 542 305 HOH HOH . H 4 HOH B 143 543 306 HOH HOH . H 4 HOH B 144 544 308 HOH HOH . H 4 HOH B 145 545 309 HOH HOH . H 4 HOH B 146 546 311 HOH HOH . H 4 HOH B 147 547 312 HOH HOH . H 4 HOH B 148 548 317 HOH HOH . H 4 HOH B 149 549 325 HOH HOH . H 4 HOH B 150 550 329 HOH HOH . H 4 HOH B 151 551 338 HOH HOH . H 4 HOH B 152 552 340 HOH HOH . H 4 HOH B 153 553 341 HOH HOH . H 4 HOH B 154 554 343 HOH HOH . H 4 HOH B 155 555 344 HOH HOH . H 4 HOH B 156 556 346 HOH HOH . H 4 HOH B 157 557 348 HOH HOH . H 4 HOH B 158 558 351 HOH HOH . I 4 HOH A 1 401 2 HOH HOH . I 4 HOH A 2 402 4 HOH HOH . I 4 HOH A 3 403 7 HOH HOH . I 4 HOH A 4 404 11 HOH HOH . I 4 HOH A 5 405 12 HOH HOH . I 4 HOH A 6 406 13 HOH HOH . I 4 HOH A 7 407 15 HOH HOH . I 4 HOH A 8 408 17 HOH HOH . I 4 HOH A 9 409 18 HOH HOH . I 4 HOH A 10 410 19 HOH HOH . I 4 HOH A 11 411 26 HOH HOH . I 4 HOH A 12 412 30 HOH HOH . I 4 HOH A 13 413 35 HOH HOH . I 4 HOH A 14 414 36 HOH HOH . I 4 HOH A 15 415 38 HOH HOH . I 4 HOH A 16 416 39 HOH HOH . I 4 HOH A 17 417 42 HOH HOH . I 4 HOH A 18 418 44 HOH HOH . I 4 HOH A 19 419 46 HOH HOH . I 4 HOH A 20 420 48 HOH HOH . I 4 HOH A 21 421 49 HOH HOH . I 4 HOH A 22 422 53 HOH HOH . I 4 HOH A 23 423 55 HOH HOH . I 4 HOH A 24 424 57 HOH HOH . I 4 HOH A 25 425 60 HOH HOH . I 4 HOH A 26 426 61 HOH HOH . I 4 HOH A 27 427 65 HOH HOH . I 4 HOH A 28 428 66 HOH HOH . I 4 HOH A 29 429 69 HOH HOH . I 4 HOH A 30 430 70 HOH HOH . I 4 HOH A 31 431 72 HOH HOH . I 4 HOH A 32 432 74 HOH HOH . I 4 HOH A 33 433 75 HOH HOH . I 4 HOH A 34 434 76 HOH HOH . I 4 HOH A 35 435 77 HOH HOH . I 4 HOH A 36 436 80 HOH HOH . I 4 HOH A 37 437 84 HOH HOH . I 4 HOH A 38 438 87 HOH HOH . I 4 HOH A 39 439 89 HOH HOH . I 4 HOH A 40 440 90 HOH HOH . I 4 HOH A 41 441 91 HOH HOH . I 4 HOH A 42 442 94 HOH HOH . I 4 HOH A 43 443 97 HOH HOH . I 4 HOH A 44 444 100 HOH HOH . I 4 HOH A 45 445 101 HOH HOH . I 4 HOH A 46 446 103 HOH HOH . I 4 HOH A 47 447 105 HOH HOH . I 4 HOH A 48 448 106 HOH HOH . I 4 HOH A 49 449 115 HOH HOH . I 4 HOH A 50 450 116 HOH HOH . I 4 HOH A 51 451 117 HOH HOH . I 4 HOH A 52 452 121 HOH HOH . I 4 HOH A 53 453 124 HOH HOH . I 4 HOH A 54 454 125 HOH HOH . I 4 HOH A 55 455 130 HOH HOH . I 4 HOH A 56 456 131 HOH HOH . I 4 HOH A 57 457 132 HOH HOH . I 4 HOH A 58 458 136 HOH HOH . I 4 HOH A 59 459 137 HOH HOH . I 4 HOH A 60 460 140 HOH HOH . I 4 HOH A 61 461 142 HOH HOH . I 4 HOH A 62 462 145 HOH HOH . I 4 HOH A 63 463 146 HOH HOH . I 4 HOH A 64 464 150 HOH HOH . I 4 HOH A 65 465 152 HOH HOH . I 4 HOH A 66 466 157 HOH HOH . I 4 HOH A 67 467 158 HOH HOH . I 4 HOH A 68 468 159 HOH HOH . I 4 HOH A 69 469 160 HOH HOH . I 4 HOH A 70 470 166 HOH HOH . I 4 HOH A 71 471 167 HOH HOH . I 4 HOH A 72 472 168 HOH HOH . I 4 HOH A 73 473 171 HOH HOH . I 4 HOH A 74 474 173 HOH HOH . I 4 HOH A 75 475 176 HOH HOH . I 4 HOH A 76 476 177 HOH HOH . I 4 HOH A 77 477 178 HOH HOH . I 4 HOH A 78 478 182 HOH HOH . I 4 HOH A 79 479 184 HOH HOH . I 4 HOH A 80 480 185 HOH HOH . I 4 HOH A 81 481 186 HOH HOH . I 4 HOH A 82 482 187 HOH HOH . I 4 HOH A 83 483 189 HOH HOH . I 4 HOH A 84 484 191 HOH HOH . I 4 HOH A 85 485 192 HOH HOH . I 4 HOH A 86 486 193 HOH HOH . I 4 HOH A 87 487 194 HOH HOH . I 4 HOH A 88 488 195 HOH HOH . I 4 HOH A 89 489 196 HOH HOH . I 4 HOH A 90 490 197 HOH HOH . I 4 HOH A 91 491 203 HOH HOH . I 4 HOH A 92 492 206 HOH HOH . I 4 HOH A 93 493 207 HOH HOH . I 4 HOH A 94 494 212 HOH HOH . I 4 HOH A 95 495 213 HOH HOH . I 4 HOH A 96 496 215 HOH HOH . I 4 HOH A 97 497 216 HOH HOH . I 4 HOH A 98 498 218 HOH HOH . I 4 HOH A 99 499 219 HOH HOH . I 4 HOH A 100 500 220 HOH HOH . I 4 HOH A 101 501 222 HOH HOH . I 4 HOH A 102 502 224 HOH HOH . I 4 HOH A 103 503 225 HOH HOH . I 4 HOH A 104 504 229 HOH HOH . I 4 HOH A 105 505 230 HOH HOH . I 4 HOH A 106 506 236 HOH HOH . I 4 HOH A 107 507 239 HOH HOH . I 4 HOH A 108 508 240 HOH HOH . I 4 HOH A 109 509 242 HOH HOH . I 4 HOH A 110 510 244 HOH HOH . I 4 HOH A 111 511 247 HOH HOH . I 4 HOH A 112 512 248 HOH HOH . I 4 HOH A 113 513 249 HOH HOH . I 4 HOH A 114 514 251 HOH HOH . I 4 HOH A 115 515 253 HOH HOH . I 4 HOH A 116 516 256 HOH HOH . I 4 HOH A 117 517 257 HOH HOH . I 4 HOH A 118 518 262 HOH HOH . I 4 HOH A 119 519 271 HOH HOH . I 4 HOH A 120 520 273 HOH HOH . I 4 HOH A 121 521 276 HOH HOH . I 4 HOH A 122 522 277 HOH HOH . I 4 HOH A 123 523 278 HOH HOH . I 4 HOH A 124 524 282 HOH HOH . I 4 HOH A 125 525 283 HOH HOH . I 4 HOH A 126 526 284 HOH HOH . I 4 HOH A 127 527 285 HOH HOH . I 4 HOH A 128 528 287 HOH HOH . I 4 HOH A 129 529 291 HOH HOH . I 4 HOH A 130 530 292 HOH HOH . I 4 HOH A 131 531 294 HOH HOH . I 4 HOH A 132 532 296 HOH HOH . I 4 HOH A 133 533 297 HOH HOH . I 4 HOH A 134 534 300 HOH HOH . I 4 HOH A 135 535 307 HOH HOH . I 4 HOH A 136 536 310 HOH HOH . I 4 HOH A 137 537 313 HOH HOH . I 4 HOH A 138 538 314 HOH HOH . I 4 HOH A 139 539 322 HOH HOH . I 4 HOH A 140 540 323 HOH HOH . I 4 HOH A 141 541 326 HOH HOH . I 4 HOH A 142 542 328 HOH HOH . I 4 HOH A 143 543 331 HOH HOH . I 4 HOH A 144 544 332 HOH HOH . I 4 HOH A 145 545 333 HOH HOH . I 4 HOH A 146 546 334 HOH HOH . I 4 HOH A 147 547 335 HOH HOH . I 4 HOH A 148 548 336 HOH HOH . I 4 HOH A 149 549 337 HOH HOH . I 4 HOH A 150 550 339 HOH HOH . I 4 HOH A 151 551 342 HOH HOH . I 4 HOH A 152 552 345 HOH HOH . I 4 HOH A 153 553 347 HOH HOH . I 4 HOH A 154 554 349 HOH HOH . I 4 HOH A 155 555 350 HOH HOH . I 4 HOH A 156 556 352 HOH HOH . I 4 HOH A 157 557 353 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 10.454 -22.971 -7.135 1 44.84 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . F 2 9.076 -22.889 -7.581 1 60.8 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . F 2 10.24 -23.107 -5.601 1 51.65 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . F 2 10.829 -24.263 -5.029 1 54.07 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . F 2 10.771 -21.989 -4.811 1 35.72 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . F 2 11.575 -21.313 -5.805 1 62.4 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #