data_4REM # _model_server_result.job_id 03VLXM1T-oGk2uIGLNWGdQ _model_server_result.datetime_utc '2024-11-29 23:14:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4REM # _exptl.entry_id 4REM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.244 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)chromenium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.57 _cell.angle_gamma 90 _cell.entry_id 4REM _cell.length_a 50.021 _cell.length_b 55.121 _cell.length_c 85.958 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4REM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H11 O7 1' _chem_comp.formula_weight 303.244 _chem_comp.id DLM _chem_comp.mon_nstd_flag . _chem_comp.name 3,5,7-trihydroxy-2-(3,4,5-trihydroxyphenyl)chromenium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Delphinidin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C18 DLM sing 83 n n O24 C17 DLM sing 84 n n C18 C17 DLM doub 85 n y C18 C19 DLM sing 86 n y C17 C16 DLM sing 87 n y C19 C14 DLM doub 88 n y C16 O21 DLM sing 89 n n C16 C15 DLM doub 90 n y C14 C15 DLM sing 91 n y C14 C11 DLM sing 92 n n O12 C11 DLM doub 93 n y O12 C4 DLM sing 94 n y C5 C4 DLM doub 95 n y C5 C6 DLM sing 96 n y C11 C10 DLM sing 97 n y O29 C6 DLM sing 98 n n C4 C3 DLM sing 99 n y C6 C1 DLM doub 100 n y C10 O27 DLM sing 101 n n C10 C9 DLM doub 102 n y C3 C9 DLM sing 103 n y C3 C2 DLM doub 104 n y C1 C2 DLM sing 105 n y C2 O30 DLM sing 106 n n C15 H1 DLM sing 107 n n C1 H2 DLM sing 108 n n O21 H3 DLM sing 109 n n O22 H4 DLM sing 110 n n C19 H5 DLM sing 111 n n O24 H6 DLM sing 112 n n O27 H7 DLM sing 113 n n C9 H8 DLM sing 114 n n C5 H9 DLM sing 115 n n O29 H10 DLM sing 116 n n O30 H11 DLM sing 117 n n # _atom_sites.entry_id 4REM _atom_sites.fract_transf_matrix[1][1] 0.019992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005195 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DLM A 1 1001 1001 DLM PC1 . C 3 GOL A 1 1002 1002 GOL GOL . D 3 GOL A 1 1003 1003 GOL GOL . E 3 GOL A 1 1004 1004 GOL GOL . F 4 HOH A 1 1101 1 HOH HOH . F 4 HOH A 2 1102 2 HOH HOH . F 4 HOH A 3 1103 3 HOH HOH . F 4 HOH A 4 1104 4 HOH HOH . F 4 HOH A 5 1105 5 HOH HOH . F 4 HOH A 6 1106 6 HOH HOH . F 4 HOH A 7 1107 7 HOH HOH . F 4 HOH A 8 1108 8 HOH HOH . F 4 HOH A 9 1109 9 HOH HOH . F 4 HOH A 10 1110 10 HOH HOH . F 4 HOH A 11 1111 11 HOH HOH . F 4 HOH A 12 1112 12 HOH HOH . F 4 HOH A 13 1113 13 HOH HOH . F 4 HOH A 14 1114 14 HOH HOH . F 4 HOH A 15 1115 15 HOH HOH . F 4 HOH A 16 1116 16 HOH HOH . F 4 HOH A 17 1117 17 HOH HOH . F 4 HOH A 18 1118 18 HOH HOH . F 4 HOH A 19 1119 19 HOH HOH . F 4 HOH A 20 1120 20 HOH HOH . F 4 HOH A 21 1121 21 HOH HOH . F 4 HOH A 22 1122 22 HOH HOH . F 4 HOH A 23 1123 23 HOH HOH . F 4 HOH A 24 1124 24 HOH HOH . F 4 HOH A 25 1125 25 HOH HOH . F 4 HOH A 26 1126 26 HOH HOH . F 4 HOH A 27 1127 27 HOH HOH . F 4 HOH A 28 1128 28 HOH HOH . F 4 HOH A 29 1129 29 HOH HOH . F 4 HOH A 30 1130 30 HOH HOH . F 4 HOH A 31 1131 31 HOH HOH . F 4 HOH A 32 1132 32 HOH HOH . F 4 HOH A 33 1133 33 HOH HOH . F 4 HOH A 34 1134 34 HOH HOH . F 4 HOH A 35 1135 35 HOH HOH . F 4 HOH A 36 1136 36 HOH HOH . F 4 HOH A 37 1137 37 HOH HOH . F 4 HOH A 38 1138 38 HOH HOH . F 4 HOH A 39 1139 39 HOH HOH . F 4 HOH A 40 1140 40 HOH HOH . F 4 HOH A 41 1141 41 HOH HOH . F 4 HOH A 42 1142 42 HOH HOH . F 4 HOH A 43 1143 43 HOH HOH . F 4 HOH A 44 1144 44 HOH HOH . F 4 HOH A 45 1145 45 HOH HOH . F 4 HOH A 46 1146 46 HOH HOH . F 4 HOH A 47 1147 47 HOH HOH . F 4 HOH A 48 1148 48 HOH HOH . F 4 HOH A 49 1149 49 HOH HOH . F 4 HOH A 50 1150 50 HOH HOH . F 4 HOH A 51 1151 51 HOH HOH . F 4 HOH A 52 1152 52 HOH HOH . F 4 HOH A 53 1153 53 HOH HOH . F 4 HOH A 54 1154 54 HOH HOH . F 4 HOH A 55 1155 55 HOH HOH . F 4 HOH A 56 1156 56 HOH HOH . F 4 HOH A 57 1157 57 HOH HOH . F 4 HOH A 58 1158 58 HOH HOH . F 4 HOH A 59 1159 59 HOH HOH . F 4 HOH A 60 1160 60 HOH HOH . F 4 HOH A 61 1161 61 HOH HOH . F 4 HOH A 62 1162 62 HOH HOH . F 4 HOH A 63 1163 63 HOH HOH . F 4 HOH A 64 1164 64 HOH HOH . F 4 HOH A 65 1165 65 HOH HOH . F 4 HOH A 66 1166 66 HOH HOH . F 4 HOH A 67 1167 67 HOH HOH . F 4 HOH A 68 1168 68 HOH HOH . F 4 HOH A 69 1169 69 HOH HOH . F 4 HOH A 70 1170 70 HOH HOH . F 4 HOH A 71 1171 71 HOH HOH . F 4 HOH A 72 1172 72 HOH HOH . F 4 HOH A 73 1173 73 HOH HOH . F 4 HOH A 74 1174 74 HOH HOH . F 4 HOH A 75 1175 75 HOH HOH . F 4 HOH A 76 1176 76 HOH HOH . F 4 HOH A 77 1177 77 HOH HOH . F 4 HOH A 78 1178 78 HOH HOH . F 4 HOH A 79 1179 79 HOH HOH . F 4 HOH A 80 1180 80 HOH HOH . F 4 HOH A 81 1181 81 HOH HOH . F 4 HOH A 82 1182 83 HOH HOH . F 4 HOH A 83 1183 84 HOH HOH . F 4 HOH A 84 1184 85 HOH HOH . F 4 HOH A 85 1185 86 HOH HOH . F 4 HOH A 86 1186 87 HOH HOH . F 4 HOH A 87 1187 88 HOH HOH . F 4 HOH A 88 1188 89 HOH HOH . F 4 HOH A 89 1189 90 HOH HOH . F 4 HOH A 90 1190 91 HOH HOH . F 4 HOH A 91 1191 92 HOH HOH . F 4 HOH A 92 1192 93 HOH HOH . F 4 HOH A 93 1193 94 HOH HOH . F 4 HOH A 94 1194 95 HOH HOH . F 4 HOH A 95 1195 96 HOH HOH . F 4 HOH A 96 1196 97 HOH HOH . F 4 HOH A 97 1197 98 HOH HOH . F 4 HOH A 98 1198 100 HOH HOH . F 4 HOH A 99 1199 101 HOH HOH . F 4 HOH A 100 1200 102 HOH HOH . F 4 HOH A 101 1201 103 HOH HOH . F 4 HOH A 102 1202 104 HOH HOH . F 4 HOH A 103 1203 105 HOH HOH . F 4 HOH A 104 1204 106 HOH HOH . F 4 HOH A 105 1205 107 HOH HOH . F 4 HOH A 106 1206 109 HOH HOH . F 4 HOH A 107 1207 110 HOH HOH . F 4 HOH A 108 1208 111 HOH HOH . F 4 HOH A 109 1209 112 HOH HOH . F 4 HOH A 110 1210 114 HOH HOH . F 4 HOH A 111 1211 119 HOH HOH . F 4 HOH A 112 1212 120 HOH HOH . F 4 HOH A 113 1213 121 HOH HOH . F 4 HOH A 114 1214 122 HOH HOH . F 4 HOH A 115 1215 123 HOH HOH . F 4 HOH A 116 1216 125 HOH HOH . F 4 HOH A 117 1217 126 HOH HOH . F 4 HOH A 118 1218 127 HOH HOH . F 4 HOH A 119 1219 128 HOH HOH . F 4 HOH A 120 1220 129 HOH HOH . F 4 HOH A 121 1221 130 HOH HOH . F 4 HOH A 122 1222 131 HOH HOH . F 4 HOH A 123 1223 132 HOH HOH . F 4 HOH A 124 1224 133 HOH HOH . F 4 HOH A 125 1225 134 HOH HOH . F 4 HOH A 126 1226 135 HOH HOH . F 4 HOH A 127 1227 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 DLM . . . B 2 2.979 -4.364 15.095 1 38.2 ? O12 DLM 1001 A 1 HETATM 2 C C11 DLM . . . B 2 2.071 -3.399 15.454 1 38.76 ? C11 DLM 1001 A 1 HETATM 3 C C14 DLM . . . B 2 0.781 -3.39 14.699 1 38.13 ? C14 DLM 1001 A 1 HETATM 4 C C15 DLM . . . B 2 -0.153 -2.358 14.815 1 38.13 ? C15 DLM 1001 A 1 HETATM 5 C C1 DLM . . . B 2 6.726 -4.662 17.026 1 38.78 ? C1 DLM 1001 A 1 HETATM 6 C C2 DLM . . . B 2 5.874 -3.652 17.461 1 38.55 ? C2 DLM 1001 A 1 HETATM 7 O O21 DLM . . . B 2 -2.247 -1.353 14.233 1 38.41 ? O21 DLM 1001 A 1 HETATM 8 O O22 DLM . . . B 2 -0.815 -5.649 12.277 1 38.55 ? O22 DLM 1001 A 1 HETATM 9 C C3 DLM . . . B 2 4.544 -3.509 16.809 1 38.56 ? C3 DLM 1001 A 1 HETATM 10 C C18 DLM . . . B 2 -0.617 -4.577 13.096 1 39.57 ? C18 DLM 1001 A 1 HETATM 11 C C19 DLM . . . B 2 0.545 -4.471 13.852 1 38.5 ? C19 DLM 1001 A 1 HETATM 12 C C17 DLM . . . B 2 -1.634 -3.504 13.19 1 39.4 ? C17 DLM 1001 A 1 HETATM 13 O O24 DLM . . . B 2 -2.787 -3.567 12.466 1 39.33 ? O24 DLM 1001 A 1 HETATM 14 C C16 DLM . . . B 2 -1.35 -2.369 14.101 1 38.48 ? C16 DLM 1001 A 1 HETATM 15 C C10 DLM . . . B 2 2.411 -2.433 16.55 1 38.03 ? C10 DLM 1001 A 1 HETATM 16 O O27 DLM . . . B 2 1.55 -1.457 16.953 1 36.8 ? O27 DLM 1001 A 1 HETATM 17 C C9 DLM . . . B 2 3.642 -2.525 17.191 1 38.74 ? C9 DLM 1001 A 1 HETATM 18 C C4 DLM . . . B 2 4.192 -4.454 15.723 1 38.04 ? C4 DLM 1001 A 1 HETATM 19 C C5 DLM . . . B 2 5.115 -5.427 15.359 1 38.33 ? C5 DLM 1001 A 1 HETATM 20 C C6 DLM . . . B 2 6.353 -5.529 15.998 1 39.17 ? C6 DLM 1001 A 1 HETATM 21 O O29 DLM . . . B 2 7.222 -6.502 15.604 1 40.16 ? O29 DLM 1001 A 1 HETATM 22 O O30 DLM . . . B 2 6.252 -2.812 18.464 1 37.94 ? O30 DLM 1001 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #