data_4REN # _model_server_result.job_id jSayDI8-uhm6g7BK51dVsQ _model_server_result.datetime_utc '2024-11-13 11:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ren # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4REN # _exptl.entry_id 4REN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.27 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxychromenium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.6 _cell.angle_gamma 90 _cell.entry_id 4REN _cell.length_a 49.903 _cell.length_b 55.279 _cell.length_c 85.801 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4REN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H13 O7 1' _chem_comp.formula_weight 317.27 _chem_comp.id P5M _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxychromenium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Petunidin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C16 P5M sing 250 n n O24 C17 P5M sing 251 n n C16 C17 P5M doub 252 n y C16 C15 P5M sing 253 n y C17 C18 P5M sing 254 n y C15 C14 P5M doub 255 n y C18 O21 P5M sing 256 n n C18 C19 P5M doub 257 n y O21 C23 P5M sing 258 n n C14 C19 P5M sing 259 n y C14 C11 P5M sing 260 n n O12 C11 P5M doub 261 n y O12 C4 P5M sing 262 n y C5 C4 P5M doub 263 n y C5 C6 P5M sing 264 n y C11 C10 P5M sing 265 n y O29 C6 P5M sing 266 n n C4 C3 P5M sing 267 n y C6 C1 P5M doub 268 n y C10 O27 P5M sing 269 n n C10 C9 P5M doub 270 n y C3 C9 P5M sing 271 n y C3 C2 P5M doub 272 n y C1 C2 P5M sing 273 n y C2 O30 P5M sing 274 n n O30 H1 P5M sing 275 n n C9 H2 P5M sing 276 n n O27 H3 P5M sing 277 n n C1 H4 P5M sing 278 n n O29 H5 P5M sing 279 n n C5 H6 P5M sing 280 n n C15 H7 P5M sing 281 n n O22 H8 P5M sing 282 n n C19 H9 P5M sing 283 n n C23 H10 P5M sing 284 n n C23 H11 P5M sing 285 n n C23 H12 P5M sing 286 n n O24 H13 P5M sing 287 n n # _atom_sites.entry_id 4REN _atom_sites.fract_transf_matrix[1][1] 0.020039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005218 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P5M A 1 1001 1001 P5M P5M . C 3 GOL A 1 1002 1002 GOL GOL . D 3 GOL A 1 1003 1003 GOL GOL . E 3 GOL A 1 1004 1004 GOL GOL . F 3 GOL A 1 1005 1005 GOL GOL . G 4 HOH A 1 1101 1 HOH HOH . G 4 HOH A 2 1102 2 HOH HOH . G 4 HOH A 3 1103 3 HOH HOH . G 4 HOH A 4 1104 4 HOH HOH . G 4 HOH A 5 1105 5 HOH HOH . G 4 HOH A 6 1106 6 HOH HOH . G 4 HOH A 7 1107 7 HOH HOH . G 4 HOH A 8 1108 8 HOH HOH . G 4 HOH A 9 1109 9 HOH HOH . G 4 HOH A 10 1110 10 HOH HOH . G 4 HOH A 11 1111 11 HOH HOH . G 4 HOH A 12 1112 12 HOH HOH . G 4 HOH A 13 1113 13 HOH HOH . G 4 HOH A 14 1114 14 HOH HOH . G 4 HOH A 15 1115 15 HOH HOH . G 4 HOH A 16 1116 16 HOH HOH . G 4 HOH A 17 1117 17 HOH HOH . G 4 HOH A 18 1118 18 HOH HOH . G 4 HOH A 19 1119 19 HOH HOH . G 4 HOH A 20 1120 20 HOH HOH . G 4 HOH A 21 1121 21 HOH HOH . G 4 HOH A 22 1122 22 HOH HOH . G 4 HOH A 23 1123 23 HOH HOH . G 4 HOH A 24 1124 24 HOH HOH . G 4 HOH A 25 1125 25 HOH HOH . G 4 HOH A 26 1126 26 HOH HOH . G 4 HOH A 27 1127 27 HOH HOH . G 4 HOH A 28 1128 28 HOH HOH . G 4 HOH A 29 1129 29 HOH HOH . G 4 HOH A 30 1130 30 HOH HOH . G 4 HOH A 31 1131 31 HOH HOH . G 4 HOH A 32 1132 32 HOH HOH . G 4 HOH A 33 1133 33 HOH HOH . G 4 HOH A 34 1134 34 HOH HOH . G 4 HOH A 35 1135 35 HOH HOH . G 4 HOH A 36 1136 36 HOH HOH . G 4 HOH A 37 1137 37 HOH HOH . G 4 HOH A 38 1138 38 HOH HOH . G 4 HOH A 39 1139 39 HOH HOH . G 4 HOH A 40 1140 40 HOH HOH . G 4 HOH A 41 1141 41 HOH HOH . G 4 HOH A 42 1142 42 HOH HOH . G 4 HOH A 43 1143 43 HOH HOH . G 4 HOH A 44 1144 44 HOH HOH . G 4 HOH A 45 1145 45 HOH HOH . G 4 HOH A 46 1146 46 HOH HOH . G 4 HOH A 47 1147 47 HOH HOH . G 4 HOH A 48 1148 48 HOH HOH . G 4 HOH A 49 1149 50 HOH HOH . G 4 HOH A 50 1150 51 HOH HOH . G 4 HOH A 51 1151 52 HOH HOH . G 4 HOH A 52 1152 53 HOH HOH . G 4 HOH A 53 1153 54 HOH HOH . G 4 HOH A 54 1154 56 HOH HOH . G 4 HOH A 55 1155 57 HOH HOH . G 4 HOH A 56 1156 58 HOH HOH . G 4 HOH A 57 1157 59 HOH HOH . G 4 HOH A 58 1158 60 HOH HOH . G 4 HOH A 59 1159 61 HOH HOH . G 4 HOH A 60 1160 63 HOH HOH . G 4 HOH A 61 1161 64 HOH HOH . G 4 HOH A 62 1162 65 HOH HOH . G 4 HOH A 63 1163 66 HOH HOH . G 4 HOH A 64 1164 67 HOH HOH . G 4 HOH A 65 1165 68 HOH HOH . G 4 HOH A 66 1166 69 HOH HOH . G 4 HOH A 67 1167 70 HOH HOH . G 4 HOH A 68 1168 71 HOH HOH . G 4 HOH A 69 1169 72 HOH HOH . G 4 HOH A 70 1170 74 HOH HOH . G 4 HOH A 71 1171 75 HOH HOH . G 4 HOH A 72 1172 77 HOH HOH . G 4 HOH A 73 1173 78 HOH HOH . G 4 HOH A 74 1174 79 HOH HOH . G 4 HOH A 75 1175 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O30 P5M . . . B 2 6.239 -2.628 18.466 1 19.69 ? O30 P5M 1001 A 1 HETATM 2 C C2 P5M . . . B 2 5.825 -3.465 17.475 1 21.45 ? C2 P5M 1001 A 1 HETATM 3 C C3 P5M . . . B 2 4.488 -3.308 16.844 1 22.1 ? C3 P5M 1001 A 1 HETATM 4 C C9 P5M . . . B 2 3.605 -2.309 17.228 1 24.03 ? C9 P5M 1001 A 1 HETATM 5 C C10 P5M . . . B 2 2.368 -2.21 16.598 1 25.17 ? C10 P5M 1001 A 1 HETATM 6 O O27 P5M . . . B 2 1.519 -1.221 16.994 1 25.37 ? O27 P5M 1001 A 1 HETATM 7 C C1 P5M . . . B 2 6.651 -4.492 17.033 1 22.26 ? C1 P5M 1001 A 1 HETATM 8 C C6 P5M . . . B 2 6.249 -5.362 16.02 1 21.81 ? C6 P5M 1001 A 1 HETATM 9 O O29 P5M . . . B 2 7.095 -6.353 15.624 1 22.99 ? O29 P5M 1001 A 1 HETATM 10 C C5 P5M . . . B 2 5.006 -5.248 15.401 1 20.14 ? C5 P5M 1001 A 1 HETATM 11 C C4 P5M . . . B 2 4.109 -4.258 15.772 1 20.43 ? C4 P5M 1001 A 1 HETATM 12 O O12 P5M . . . B 2 2.894 -4.16 15.157 1 22.22 ? O12 P5M 1001 A 1 HETATM 13 C C11 P5M . . . B 2 2.004 -3.181 15.519 1 26.24 ? C11 P5M 1001 A 1 HETATM 14 C C14 P5M . . . B 2 0.707 -3.162 14.78 1 29.69 ? C14 P5M 1001 A 1 HETATM 15 C C15 P5M . . . B 2 0.442 -4.266 13.977 1 31.7 ? C15 P5M 1001 A 1 HETATM 16 C C16 P5M . . . B 2 -0.727 -4.369 13.236 1 35.11 ? C16 P5M 1001 A 1 HETATM 17 O O22 P5M . . . B 2 -0.955 -5.468 12.465 1 39.78 ? O22 P5M 1001 A 1 HETATM 18 C C19 P5M . . . B 2 -0.201 -2.104 14.86 1 31.63 ? C19 P5M 1001 A 1 HETATM 19 C C18 P5M . . . B 2 -1.403 -2.116 14.155 1 32.91 ? C18 P5M 1001 A 1 HETATM 20 O O21 P5M . . . B 2 -2.283 -1.069 14.25 1 35.55 ? O21 P5M 1001 A 1 HETATM 21 C C23 P5M . . . B 2 -2.826 -0.715 15.521 1 37.48 ? C23 P5M 1001 A 1 HETATM 22 C C17 P5M . . . B 2 -1.721 -3.277 13.294 1 32.21 ? C17 P5M 1001 A 1 HETATM 23 O O24 P5M . . . B 2 -2.878 -3.346 12.577 1 30.71 ? O24 P5M 1001 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 475 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #