data_4RER # _model_server_result.job_id C85KsmN9r8E0_oBItPtfYg _model_server_result.datetime_utc '2024-10-19 03:39:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4RER # _exptl.entry_id 4RER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RER _cell.length_a 132.566 _cell.length_b 132.566 _cell.length_c 195.392 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RER _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 1 7 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 4 2 1 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 4 3 2 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 4 4 3 GLC GLC C1 O1 . O4 HO4 . sing 5 ? 4 5 4 GLC GLC C1 O1 . O4 HO4 . sing 6 ? 4 6 5 GLC GLC C1 O1 . O4 HO4 . sing 7 ? 4 7 6 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 C 1 GLC B 10 BCD 4 n D GLC 2 C 2 GLC B 10 BCD 4 n D GLC 3 C 3 GLC B 10 BCD 4 n D GLC 4 C 4 GLC B 10 BCD 4 n D GLC 5 C 5 GLC B 10 BCD 4 n D GLC 6 C 6 GLC B 10 BCD 4 n D GLC 7 C 7 GLC B 10 BCD # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 163 A ARG 173 1_555 A N TPO 164 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C TPO 164 A TPO 174 1_555 A N SER 165 A SER 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C LYS 32 B LYS 107 1_555 B N SEP 33 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C SEP 33 B SEP 108 1_555 B N HIS 34 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 D O4 GLC . C GLC 1 1_555 D C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 sing covale ? covale6 D C1 GLC . C GLC 1 1_555 D O4 GLC . C GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 sing covale ? covale7 D O4 GLC . C GLC 2 1_555 D C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 sing covale ? covale8 D O4 GLC . C GLC 3 1_555 D C1 GLC . C GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 sing covale ? covale9 D O4 GLC . C GLC 4 1_555 D C1 GLC . C GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 sing covale ? covale10 D O4 GLC . C GLC 5 1_555 D C1 GLC . C GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 sing covale ? covale11 D O4 GLC . C GLC 6 1_555 D C1 GLC . C GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 sing # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 402 n n O4 C21 STU sing 403 n n C25 C24 STU sing 404 n n C25 N3 STU sing 405 n n C25 H25 STU sing 406 n n C24 C23 STU sing 407 n n C24 H241 STU sing 408 n n C24 H242 STU sing 409 n n C23 C22 STU sing 410 n n C23 N4 STU sing 411 n n C23 H23 STU sing 412 n n C22 C21 STU sing 413 n n C22 O6 STU sing 414 n n C22 H22 STU sing 415 n n C21 C26 STU sing 416 n n C21 N2 STU sing 417 n n C26 H261 STU sing 418 n n C26 H262 STU sing 419 n n C26 H263 STU sing 420 n n N2 C18 STU sing 421 n y N2 C17 STU sing 422 n y C18 C19 STU doub 423 n y C18 C11 STU sing 424 n y C19 C6 STU sing 425 n y C19 N3 STU sing 426 n y C6 C7 STU doub 427 n y C6 C5 STU sing 428 n y C7 C10 STU sing 429 n y C7 C8 STU sing 430 n n C10 C11 STU doub 431 n y C10 C9 STU sing 432 n n C11 C12 STU sing 433 n y C12 C17 STU doub 434 n y C12 C13 STU sing 435 n y C17 C16 STU sing 436 n y C16 C15 STU doub 437 n y C16 H16 STU sing 438 n n C15 C14 STU sing 439 n y C15 H15 STU sing 440 n n C14 C13 STU doub 441 n y C14 H14 STU sing 442 n n C13 H13 STU sing 443 n n C9 N1 STU sing 444 n n C9 H91 STU sing 445 n n C9 H92 STU sing 446 n n N1 C8 STU sing 447 n n N1 HN1 STU sing 448 n n C8 O5 STU doub 449 n n C5 C20 STU doub 450 n y C5 C4 STU sing 451 n y C20 C1 STU sing 452 n y C20 N3 STU sing 453 n y C1 C2 STU doub 454 n y C1 H1 STU sing 455 n n C2 C3 STU sing 456 n y C2 H2 STU sing 457 n n C3 C4 STU doub 458 n y C3 H3 STU sing 459 n n C4 H4 STU sing 460 n n O6 C27 STU sing 461 n n C27 H271 STU sing 462 n n C27 H272 STU sing 463 n n C27 H273 STU sing 464 n n N4 C28 STU sing 465 n n N4 HN4 STU sing 466 n n C28 H281 STU sing 467 n n C28 H282 STU sing 468 n n C28 H283 STU sing 469 n n # _atom_sites.entry_id 4RER _atom_sites.fract_transf_matrix[1][1] 0.007543 _atom_sites.fract_transf_matrix[1][2] 0.004355 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 STU A 1 601 1000 STU STU . F 6 EPE A 1 602 1100 EPE EPE . G 7 AMP G 1 401 1300 AMP AMP . H 7 AMP G 1 402 1400 AMP AMP . I 7 AMP G 1 403 1500 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . E 5 46.792 -28.795 2.947 1 125.69 ? O4 STU 601 A 1 HETATM 2 C C25 STU . . . E 5 46.268 -27.863 3.823 1 125.59 ? C25 STU 601 A 1 HETATM 3 C C24 STU . . . E 5 47.332 -27.145 4.648 1 124.64 ? C24 STU 601 A 1 HETATM 4 C C23 STU . . . E 5 48.404 -28.099 5.214 1 123.16 ? C23 STU 601 A 1 HETATM 5 C C22 STU . . . E 5 48.932 -29.009 4.099 1 123.42 ? C22 STU 601 A 1 HETATM 6 C C21 STU . . . E 5 47.764 -29.679 3.398 1 124.42 ? C21 STU 601 A 1 HETATM 7 C C26 STU . . . E 5 48.345 -30.09 2.047 1 125.3 ? C26 STU 601 A 1 HETATM 8 N N2 STU . . . E 5 47.192 -30.86 4.068 1 123.88 ? N2 STU 601 A 1 HETATM 9 C C18 STU . . . E 5 45.98 -30.802 4.761 1 124.15 ? C18 STU 601 A 1 HETATM 10 C C19 STU . . . E 5 45.101 -29.729 4.994 1 124.83 ? C19 STU 601 A 1 HETATM 11 C C6 STU . . . E 5 43.929 -29.909 5.734 1 125.2 ? C6 STU 601 A 1 HETATM 12 C C7 STU . . . E 5 43.629 -31.194 6.253 1 124.97 ? C7 STU 601 A 1 HETATM 13 C C10 STU . . . E 5 44.51 -32.246 6.016 1 124.33 ? C10 STU 601 A 1 HETATM 14 C C11 STU . . . E 5 45.672 -32.065 5.282 1 123.88 ? C11 STU 601 A 1 HETATM 15 C C12 STU . . . E 5 46.762 -32.95 4.871 1 123.36 ? C12 STU 601 A 1 HETATM 16 C C17 STU . . . E 5 47.674 -32.168 4.125 1 123.36 ? C17 STU 601 A 1 HETATM 17 C C16 STU . . . E 5 48.827 -32.791 3.618 1 123.05 ? C16 STU 601 A 1 HETATM 18 C C15 STU . . . E 5 49.03 -34.141 3.85 1 122.74 ? C15 STU 601 A 1 HETATM 19 C C14 STU . . . E 5 48.127 -34.886 4.578 1 122.79 ? C14 STU 601 A 1 HETATM 20 C C13 STU . . . E 5 46.98 -34.31 5.102 1 123.13 ? C13 STU 601 A 1 HETATM 21 C C9 STU . . . E 5 43.925 -33.462 6.684 1 124.54 ? C9 STU 601 A 1 HETATM 22 N N1 STU . . . E 5 42.675 -33.02 7.307 1 125.36 ? N1 STU 601 A 1 HETATM 23 C C8 STU . . . E 5 42.504 -31.711 7.056 1 125.56 ? C8 STU 601 A 1 HETATM 24 O O5 STU . . . E 5 41.55 -31.062 7.448 1 126.32 ? O5 STU 601 A 1 HETATM 25 C C5 STU . . . E 5 43.274 -28.599 5.772 1 126.03 ? C5 STU 601 A 1 HETATM 26 C C20 STU . . . E 5 44.097 -27.71 5.05 1 126.16 ? C20 STU 601 A 1 HETATM 27 C C1 STU . . . E 5 43.743 -26.368 4.903 1 127.13 ? C1 STU 601 A 1 HETATM 28 C C2 STU . . . E 5 42.56 -25.947 5.492 1 127.84 ? C2 STU 601 A 1 HETATM 29 C C3 STU . . . E 5 41.748 -26.814 6.201 1 127.69 ? C3 STU 601 A 1 HETATM 30 C C4 STU . . . E 5 42.084 -28.152 6.357 1 126.83 ? C4 STU 601 A 1 HETATM 31 N N3 STU . . . E 5 45.192 -28.438 4.608 1 125.43 ? N3 STU 601 A 1 HETATM 32 O O6 STU . . . E 5 49.78 -30.013 4.663 1 122.17 ? O6 STU 601 A 1 HETATM 33 C C27 STU . . . E 5 51.129 -29.609 4.423 1 121.98 ? C27 STU 601 A 1 HETATM 34 N N4 STU . . . E 5 47.819 -28.946 6.256 1 122.36 ? N4 STU 601 A 1 HETATM 35 C C28 STU . . . E 5 48.733 -28.969 7.404 1 121.12 ? C28 STU 601 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #