data_4RER # _model_server_result.job_id 5HoY2sYrIfgmS4ixX-p3SQ _model_server_result.datetime_utc '2024-10-19 03:53:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 4RER # _exptl.entry_id 4RER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RER _cell.length_a 132.566 _cell.length_b 132.566 _cell.length_c 195.392 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RER _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 1 7 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 4 2 1 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 4 3 2 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 4 4 3 GLC GLC C1 O1 . O4 HO4 . sing 5 ? 4 5 4 GLC GLC C1 O1 . O4 HO4 . sing 6 ? 4 6 5 GLC GLC C1 O1 . O4 HO4 . sing 7 ? 4 7 6 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 C 1 GLC B 10 BCD 4 n D GLC 2 C 2 GLC B 10 BCD 4 n D GLC 3 C 3 GLC B 10 BCD 4 n D GLC 4 C 4 GLC B 10 BCD 4 n D GLC 5 C 5 GLC B 10 BCD 4 n D GLC 6 C 6 GLC B 10 BCD 4 n D GLC 7 C 7 GLC B 10 BCD # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 163 A ARG 173 1_555 A N TPO 164 A TPO 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C TPO 164 A TPO 174 1_555 A N SER 165 A SER 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 B C LYS 32 B LYS 107 1_555 B N SEP 33 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C SEP 33 B SEP 108 1_555 B N HIS 34 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 D O4 GLC . C GLC 1 1_555 D C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 sing covale ? covale6 D C1 GLC . C GLC 1 1_555 D O4 GLC . C GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 sing covale ? covale7 D O4 GLC . C GLC 2 1_555 D C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 sing covale ? covale8 D O4 GLC . C GLC 3 1_555 D C1 GLC . C GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 sing covale ? covale9 D O4 GLC . C GLC 4 1_555 D C1 GLC . C GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 sing covale ? covale10 D O4 GLC . C GLC 5 1_555 D C1 GLC . C GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 sing covale ? covale11 D O4 GLC . C GLC 6 1_555 D C1 GLC . C GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 sing # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 122 n n N1 C6 EPE sing 123 n n N1 C9 EPE sing 124 n n C2 C3 EPE sing 125 n n C2 H21 EPE sing 126 n n C2 H22 EPE sing 127 n n C3 N4 EPE sing 128 n n C3 H31 EPE sing 129 n n C3 H32 EPE sing 130 n n N4 C5 EPE sing 131 n n N4 C7 EPE sing 132 n n C5 C6 EPE sing 133 n n C5 H51 EPE sing 134 n n C5 H52 EPE sing 135 n n C6 H61 EPE sing 136 n n C6 H62 EPE sing 137 n n C7 C8 EPE sing 138 n n C7 H71 EPE sing 139 n n C7 H72 EPE sing 140 n n C8 O8 EPE sing 141 n n C8 H81 EPE sing 142 n n C8 H82 EPE sing 143 n n O8 HO8 EPE sing 144 n n C9 C10 EPE sing 145 n n C9 H91 EPE sing 146 n n C9 H92 EPE sing 147 n n C10 S EPE sing 148 n n C10 H101 EPE sing 149 n n C10 H102 EPE sing 150 n n S O1S EPE doub 151 n n S O2S EPE doub 152 n n S O3S EPE sing 153 n n O3S HOS3 EPE sing 154 n n # _atom_sites.entry_id 4RER _atom_sites.fract_transf_matrix[1][1] 0.007543 _atom_sites.fract_transf_matrix[1][2] 0.004355 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 STU A 1 601 1000 STU STU . F 6 EPE A 1 602 1100 EPE EPE . G 7 AMP G 1 401 1300 AMP AMP . H 7 AMP G 1 402 1400 AMP AMP . I 7 AMP G 1 403 1500 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 6 34.278 -44.952 -6.677 1 163.4 ? N1 EPE 602 A 1 HETATM 2 C C2 EPE . . . F 6 35.623 -45.311 -6.189 1 160.75 ? C2 EPE 602 A 1 HETATM 3 C C3 EPE . . . F 6 36.161 -46.491 -6.988 1 163.08 ? C3 EPE 602 A 1 HETATM 4 N N4 EPE . . . F 6 36.103 -46.197 -8.406 1 165.25 ? N4 EPE 602 A 1 HETATM 5 C C5 EPE . . . F 6 34.786 -45.922 -8.943 1 168.12 ? C5 EPE 602 A 1 HETATM 6 C C6 EPE . . . F 6 34.142 -44.793 -8.145 1 165.97 ? C6 EPE 602 A 1 HETATM 7 C C7 EPE . . . F 6 37.282 -45.585 -8.997 1 163.42 ? C7 EPE 602 A 1 HETATM 8 C C8 EPE . . . F 6 37.028 -44.763 -10.257 1 165.05 ? C8 EPE 602 A 1 HETATM 9 O O8 EPE . . . F 6 36.561 -43.485 -9.884 1 163.21 ? O8 EPE 602 A 1 HETATM 10 C C9 EPE . . . F 6 33.29 -45.882 -6.122 1 165.84 ? C9 EPE 602 A 1 HETATM 11 C C10 EPE . . . F 6 31.929 -45.511 -6.684 1 168.81 ? C10 EPE 602 A 1 HETATM 12 S S EPE . . . F 6 30.61 -45.94 -5.542 1 170.4 ? S EPE 602 A 1 HETATM 13 O O1S EPE . . . F 6 29.361 -45.43 -6.114 1 173.06 ? O1S EPE 602 A 1 HETATM 14 O O2S EPE . . . F 6 30.92 -45.293 -4.266 1 166.69 ? O2S EPE 602 A 1 HETATM 15 O O3S EPE . . . F 6 30.572 -47.398 -5.415 1 172.97 ? O3S EPE 602 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 15 #