data_4RES # _model_server_result.job_id GMT48A4HO8SaiVCnDQb9uQ _model_server_result.datetime_utc '2024-11-28 04:07:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4res # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1001}' # _entry.id 4RES # _exptl.entry_id 4RES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 10 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.28 _cell.angle_gamma 90 _cell.entry_id 4RES _cell.length_a 65.91 _cell.length_b 240.27 _cell.length_c 152.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RES _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,J,K,L,M,N,O,P,Q 1 1 D,E,F,G,H,I,R,S,T,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 1 2 GLC FRU C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 F 1 NAG D 1001 NAG 4 n G NAG 2 F 2 NAG D 1002 NAG 5 n H GLC 1 H 1 GLC A 2003 SUC 5 n H FRU 2 H 2 FRU A 2003 SUC 5 n I GLC 1 I 1 GLC C 2003 SUC 5 n I FRU 2 I 2 FRU C 2003 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 159 B CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 E SG CYS 126 D CYS 126 1_555 E SG CYS 149 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 E SG CYS 159 D CYS 159 1_555 E SG CYS 175 D CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 E SG CYS 213 D CYS 213 1_555 E SG CYS 276 D CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A C SER 373 A SER 368 1_555 A N PHD 374 A PHD 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C PHD 374 A PHD 369 1_555 A N LYS 375 A LYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B ND2 ASN 158 B ASN 158 1_555 P C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 D C SER 373 C SER 368 1_555 D N PHD 374 C PHD 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 D C PHD 374 C PHD 369 1_555 D N LYS 375 C LYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 E ND2 ASN 158 D ASN 158 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale8 H C1 GLC . H GLC 1 1_555 H O2 FRU . H FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 sing covale ? covale9 I C1 GLC . I GLC 1 1_555 I O2 FRU . I FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 sing metalc ? metalc1 A O ALA 328 A ALA 323 1_555 M K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc2 A O VAL 330 A VAL 325 1_555 M K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc3 A OE2 GLU 332 A GLU 327 1_555 M K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc4 A OP1 PHD 374 A PHD 369 1_555 O MG MG . A MG 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 A OP3 PHD 374 A PHD 369 1_555 O MG MG . A MG 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc6 A OD2 PHD 374 A PHD 369 1_555 O MG MG . A MG 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc7 A O THR 376 A THR 371 1_555 O MG MG . A MG 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc8 A OG1 THR 376 A THR 371 1_555 O MG MG . A MG 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc9 A OD2 ASP 715 A ASP 710 1_555 O MG MG . A MG 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc10 A OD1 ASP 715 A ASP 710 1_555 O MG MG . A MG 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc11 A O LYS 724 A LYS 719 1_555 N K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc12 A OD2 ASP 745 A ASP 740 1_555 N K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc13 A OD1 ASP 745 A ASP 740 1_555 N K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc14 A O THR 777 A THR 772 1_555 L K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc15 A OG1 THR 777 A THR 772 1_555 L K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.263 ? metalc ? metalc16 A OG SER 780 A SER 775 1_555 L K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc17 A OD1 ASN 781 A ASN 776 1_555 L K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc18 A OD1 ASP 809 A ASP 804 1_555 L K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc19 A OD2 ASP 809 A ASP 804 1_555 M K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.229 ? metalc ? metalc20 J O24 BUF . A BUF 2001 1_555 M K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc21 D O ALA 328 C ALA 323 1_555 T K K . C K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc22 D O VAL 330 C VAL 325 1_555 T K K . C K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc23 D OE2 GLU 332 C GLU 327 1_555 T K K . C K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc24 D OP3 PHD 374 C PHD 369 1_555 V MG MG . C MG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc25 D OP2 PHD 374 C PHD 369 1_555 V MG MG . C MG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc26 D OD2 PHD 374 C PHD 369 1_555 V MG MG . C MG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc27 D O THR 376 C THR 371 1_555 V MG MG . C MG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc28 D OG1 THR 376 C THR 371 1_555 V MG MG . C MG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc29 D OD1 ASP 715 C ASP 710 1_555 V MG MG . C MG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc30 D OD2 ASP 715 C ASP 710 1_555 V MG MG . C MG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc31 D O LYS 724 C LYS 719 1_555 U K K . C K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc32 D OD2 ASP 745 C ASP 740 1_555 U K K . C K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc33 D OD1 ASP 745 C ASP 740 1_555 U K K . C K 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc34 D O THR 777 C THR 772 1_555 S K K . C K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc35 D OG1 THR 777 C THR 772 1_555 S K K . C K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.282 ? metalc ? metalc36 D OG SER 780 C SER 775 1_555 S K K . C K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc37 D OD1 ASN 781 C ASN 776 1_555 S K K . C K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc38 D OD1 ASP 809 C ASP 804 1_555 S K K . C K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc39 D OD2 ASP 809 C ASP 804 1_555 T K K . C K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.255 ? metalc ? metalc40 R O24 BUF . C BUF 1102 1_555 T K K . C K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 557 n n C1 O1 NAG sing 558 n n C1 O5 NAG sing 559 n n C1 H1 NAG sing 560 n n C2 C3 NAG sing 561 n n C2 N2 NAG sing 562 n n C2 H2 NAG sing 563 n n C3 C4 NAG sing 564 n n C3 O3 NAG sing 565 n n C3 H3 NAG sing 566 n n C4 C5 NAG sing 567 n n C4 O4 NAG sing 568 n n C4 H4 NAG sing 569 n n C5 C6 NAG sing 570 n n C5 O5 NAG sing 571 n n C5 H5 NAG sing 572 n n C6 O6 NAG sing 573 n n C6 H61 NAG sing 574 n n C6 H62 NAG sing 575 n n C7 C8 NAG sing 576 n n C7 N2 NAG sing 577 n n C7 O7 NAG doub 578 n n C8 H81 NAG sing 579 n n C8 H82 NAG sing 580 n n C8 H83 NAG sing 581 n n N2 HN2 NAG sing 582 n n O1 HO1 NAG sing 583 n n O3 HO3 NAG sing 584 n n O4 HO4 NAG sing 585 n n O6 HO6 NAG sing 586 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4RES _atom_sites.fract_transf_matrix[1][1] 0.015172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003301 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 6 BUF A 1 2001 2001 BUF BUF . K 7 CLR A 1 2002 2002 CLR CLR . L 8 K A 1 2003 3001 K K . M 8 K A 1 2004 3002 K K . N 8 K A 1 2005 3003 K K . O 9 MG A 1 2006 3004 MG MG . P 10 NAG B 1 1001 1001 NAG NAG . Q 11 17F G 1 1001 1001 17F 17F . R 6 BUF C 1 1102 2001 BUF BUF . S 8 K C 1 1104 3001 K K . T 8 K C 1 1105 3002 K K . U 8 K C 1 1106 3003 K K . V 9 MG C 1 1107 3004 MG MG . W 7 CLR E 1 101 2002 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 10 4.145 10.195 -53.331 1 144.43 ? C1 NAG 1001 B 1 HETATM 2 C C2 NAG . . . P 10 5.553 10.289 -53.947 1 144.94 ? C2 NAG 1001 B 1 HETATM 3 C C3 NAG . . . P 10 5.572 9.692 -55.351 1 148.39 ? C3 NAG 1001 B 1 HETATM 4 C C4 NAG . . . P 10 4.981 8.289 -55.352 1 150.82 ? C4 NAG 1001 B 1 HETATM 5 C C5 NAG . . . P 10 3.596 8.312 -54.712 1 150.15 ? C5 NAG 1001 B 1 HETATM 6 C C6 NAG . . . P 10 2.977 6.94 -54.583 1 152.71 ? C6 NAG 1001 B 1 HETATM 7 C C7 NAG . . . P 10 6.563 12.302 -52.941 1 140.17 ? C7 NAG 1001 B 1 HETATM 8 C C8 NAG . . . P 10 6.979 13.722 -53.177 1 138.79 ? C8 NAG 1001 B 1 HETATM 9 N N2 NAG . . . P 10 6.01 11.677 -53.985 1 142.91 ? N2 NAG 1001 B 1 HETATM 10 O O3 NAG . . . P 10 6.917 9.657 -55.815 1 149.13 ? O3 NAG 1001 B 1 HETATM 11 O O4 NAG . . . P 10 4.879 7.801 -56.687 1 154.2 ? O4 NAG 1001 B 1 HETATM 12 O O5 NAG . . . P 10 3.7 8.84 -53.386 1 146.91 ? O5 NAG 1001 B 1 HETATM 13 O O6 NAG . . . P 10 2.712 6.626 -53.222 1 151.19 ? O6 NAG 1001 B 1 HETATM 14 O O7 NAG . . . P 10 6.715 11.753 -51.853 1 139.1 ? O7 NAG 1001 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #