data_4REW # _model_server_result.job_id IzPfDS3UjezLszsyFqZUGg _model_server_result.datetime_utc '2024-10-19 03:49:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 4REW # _exptl.entry_id 4REW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4REW _cell.length_a 126.9 _cell.length_b 126.9 _cell.length_c 188.794 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4REW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4REW _atom_sites.fract_transf_matrix[1][1] 0.00788 _atom_sites.fract_transf_matrix[1][2] 0.00455 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 STU A 1 601 601 STU STU . E 5 AMP G 1 401 401 AMP AMP . F 5 AMP G 1 402 402 AMP AMP . G 5 AMP G 1 403 403 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . G 5 34.788 -20.279 -19.925 1 198.05 ? P AMP 403 G 1 HETATM 2 O O1P AMP . . . G 5 34.772 -21.447 -18.835 1 198.26 ? O1P AMP 403 G 1 HETATM 3 O O2P AMP . . . G 5 35.888 -20.263 -21.055 1 196.51 ? O2P AMP 403 G 1 HETATM 4 O O3P AMP . . . G 5 34.862 -19.047 -19.203 1 196.72 ? O3P AMP 403 G 1 HETATM 5 O O5' AMP . . . G 5 33.381 -20.274 -20.658 1 201.16 ? O5' AMP 403 G 1 HETATM 6 C C5' AMP . . . G 5 32.979 -21.415 -21.393 1 202.83 ? C5' AMP 403 G 1 HETATM 7 C C4' AMP . . . G 5 31.598 -21.268 -21.961 1 206.22 ? C4' AMP 403 G 1 HETATM 8 O O4' AMP . . . G 5 31.544 -20.077 -22.775 1 206.34 ? O4' AMP 403 G 1 HETATM 9 C C3' AMP . . . G 5 31.158 -22.416 -22.849 1 208.46 ? C3' AMP 403 G 1 HETATM 10 O O3' AMP . . . G 5 29.755 -22.636 -22.729 1 212.16 ? O3' AMP 403 G 1 HETATM 11 C C2' AMP . . . G 5 31.513 -21.948 -24.26 1 208.31 ? C2' AMP 403 G 1 HETATM 12 O O2' AMP . . . G 5 30.613 -22.388 -25.252 1 211.65 ? O2' AMP 403 G 1 HETATM 13 C C1' AMP . . . G 5 31.531 -20.413 -24.151 1 207.43 ? C1' AMP 403 G 1 HETATM 14 N N9 AMP . . . G 5 32.712 -19.798 -24.767 1 204.27 ? N9 AMP 403 G 1 HETATM 15 C C8 AMP . . . G 5 33.977 -20.008 -24.365 1 201.34 ? C8 AMP 403 G 1 HETATM 16 N N7 AMP . . . G 5 34.826 -19.299 -25.134 1 200.11 ? N7 AMP 403 G 1 HETATM 17 C C5 AMP . . . G 5 34.089 -18.622 -26.047 1 202.2 ? C5 AMP 403 G 1 HETATM 18 C C6 AMP . . . G 5 34.442 -17.741 -27.081 1 202.41 ? C6 AMP 403 G 1 HETATM 19 N N6 AMP . . . G 5 35.865 -17.392 -27.344 1 200.09 ? N6 AMP 403 G 1 HETATM 20 N N1 AMP . . . G 5 33.455 -17.218 -27.832 1 205.19 ? N1 AMP 403 G 1 HETATM 21 C C2 AMP . . . G 5 32.175 -17.537 -27.589 1 207.75 ? C2 AMP 403 G 1 HETATM 22 N N3 AMP . . . G 5 31.799 -18.372 -26.613 1 207.7 ? N3 AMP 403 G 1 HETATM 23 C C4 AMP . . . G 5 32.746 -18.934 -25.82 1 204.88 ? C4 AMP 403 G 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #