data_4RF1 # _model_server_result.job_id 3YodQ-gSPLKmK69DTYlUzQ _model_server_result.datetime_utc '2024-11-24 01:43:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rf1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1906}' # _entry.id 4RF1 # _exptl.entry_id 4RF1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RF1 _cell.length_a 136.77 _cell.length_b 136.77 _cell.length_c 57.991 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RF1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 228 A CYS 1707 1_555 C ZN ZN . A ZN 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A SG CYS 193 A CYS 1672 1_555 C ZN ZN . A ZN 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 A SG CYS 230 A CYS 1709 1_555 C ZN ZN . A ZN 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc4 A SG CYS 196 A CYS 1675 1_555 C ZN ZN . A ZN 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? covale ? covale1 A SG CYS 113 A CYS 1592 1_555 I CA 3CN . B 3CN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? covale ? covale2 B C GLY 75 B GLY 75 1_555 I ND 3CN . B 3CN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RF1 _atom_sites.fract_transf_matrix[1][1] 0.007312 _atom_sites.fract_transf_matrix[1][2] 0.004221 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1901 1 ZN ZN . D 4 PGO A 1 1902 178 PGO PGO . E 4 PGO A 1 1903 179 PGO PGO . F 4 PGO A 1 1904 180 PGO PGO . G 4 PGO A 1 1905 181 PGO PGO . H 4 PGO A 1 1906 182 PGO PGO . I 5 3CN B 1 101 76 3CN 3CN . J 6 HOH A 1 2001 2 HOH HOH . J 6 HOH A 2 2002 3 HOH HOH . J 6 HOH A 3 2003 4 HOH HOH . J 6 HOH A 4 2004 5 HOH HOH . J 6 HOH A 5 2005 6 HOH HOH . J 6 HOH A 6 2006 7 HOH HOH . J 6 HOH A 7 2007 8 HOH HOH . J 6 HOH A 8 2008 9 HOH HOH . J 6 HOH A 9 2009 10 HOH HOH . J 6 HOH A 10 2010 11 HOH HOH . J 6 HOH A 11 2011 12 HOH HOH . J 6 HOH A 12 2012 13 HOH HOH . J 6 HOH A 13 2013 14 HOH HOH . J 6 HOH A 14 2014 15 HOH HOH . J 6 HOH A 15 2015 16 HOH HOH . J 6 HOH A 16 2016 17 HOH HOH . J 6 HOH A 17 2017 18 HOH HOH . J 6 HOH A 18 2018 19 HOH HOH . J 6 HOH A 19 2019 20 HOH HOH . J 6 HOH A 20 2020 21 HOH HOH . J 6 HOH A 21 2021 22 HOH HOH . J 6 HOH A 22 2022 23 HOH HOH . J 6 HOH A 23 2023 24 HOH HOH . J 6 HOH A 24 2024 25 HOH HOH . J 6 HOH A 25 2025 26 HOH HOH . J 6 HOH A 26 2026 27 HOH HOH . J 6 HOH A 27 2027 28 HOH HOH . J 6 HOH A 28 2028 29 HOH HOH . J 6 HOH A 29 2029 30 HOH HOH . J 6 HOH A 30 2030 31 HOH HOH . J 6 HOH A 31 2031 32 HOH HOH . J 6 HOH A 32 2032 33 HOH HOH . J 6 HOH A 33 2033 34 HOH HOH . J 6 HOH A 34 2034 35 HOH HOH . J 6 HOH A 35 2035 36 HOH HOH . J 6 HOH A 36 2036 37 HOH HOH . J 6 HOH A 37 2037 38 HOH HOH . J 6 HOH A 38 2038 41 HOH HOH . J 6 HOH A 39 2039 42 HOH HOH . J 6 HOH A 40 2040 43 HOH HOH . J 6 HOH A 41 2041 44 HOH HOH . J 6 HOH A 42 2042 45 HOH HOH . J 6 HOH A 43 2043 46 HOH HOH . J 6 HOH A 44 2044 47 HOH HOH . J 6 HOH A 45 2045 48 HOH HOH . J 6 HOH A 46 2046 49 HOH HOH . J 6 HOH A 47 2047 50 HOH HOH . J 6 HOH A 48 2048 51 HOH HOH . J 6 HOH A 49 2049 52 HOH HOH . J 6 HOH A 50 2050 53 HOH HOH . J 6 HOH A 51 2051 54 HOH HOH . J 6 HOH A 52 2052 55 HOH HOH . J 6 HOH A 53 2053 56 HOH HOH . J 6 HOH A 54 2054 57 HOH HOH . J 6 HOH A 55 2055 58 HOH HOH . J 6 HOH A 56 2056 59 HOH HOH . J 6 HOH A 57 2057 60 HOH HOH . J 6 HOH A 58 2058 61 HOH HOH . J 6 HOH A 59 2059 62 HOH HOH . J 6 HOH A 60 2060 63 HOH HOH . J 6 HOH A 61 2061 64 HOH HOH . J 6 HOH A 62 2062 65 HOH HOH . J 6 HOH A 63 2063 66 HOH HOH . J 6 HOH A 64 2064 67 HOH HOH . J 6 HOH A 65 2065 68 HOH HOH . J 6 HOH A 66 2066 69 HOH HOH . J 6 HOH A 67 2067 70 HOH HOH . J 6 HOH A 68 2068 71 HOH HOH . J 6 HOH A 69 2069 72 HOH HOH . J 6 HOH A 70 2070 73 HOH HOH . J 6 HOH A 71 2071 74 HOH HOH . J 6 HOH A 72 2072 75 HOH HOH . J 6 HOH A 73 2073 76 HOH HOH . J 6 HOH A 74 2074 77 HOH HOH . J 6 HOH A 75 2075 78 HOH HOH . J 6 HOH A 76 2076 79 HOH HOH . J 6 HOH A 77 2077 80 HOH HOH . J 6 HOH A 78 2078 81 HOH HOH . J 6 HOH A 79 2079 82 HOH HOH . J 6 HOH A 80 2080 83 HOH HOH . J 6 HOH A 81 2081 84 HOH HOH . J 6 HOH A 82 2082 85 HOH HOH . J 6 HOH A 83 2083 86 HOH HOH . J 6 HOH A 84 2084 87 HOH HOH . J 6 HOH A 85 2085 88 HOH HOH . J 6 HOH A 86 2086 89 HOH HOH . J 6 HOH A 87 2087 90 HOH HOH . J 6 HOH A 88 2088 91 HOH HOH . J 6 HOH A 89 2089 92 HOH HOH . J 6 HOH A 90 2090 93 HOH HOH . J 6 HOH A 91 2091 94 HOH HOH . J 6 HOH A 92 2092 95 HOH HOH . J 6 HOH A 93 2093 96 HOH HOH . J 6 HOH A 94 2094 97 HOH HOH . J 6 HOH A 95 2095 98 HOH HOH . J 6 HOH A 96 2096 99 HOH HOH . J 6 HOH A 97 2097 100 HOH HOH . J 6 HOH A 98 2098 101 HOH HOH . J 6 HOH A 99 2099 102 HOH HOH . J 6 HOH A 100 2100 103 HOH HOH . J 6 HOH A 101 2101 104 HOH HOH . J 6 HOH A 102 2102 105 HOH HOH . J 6 HOH A 103 2103 106 HOH HOH . J 6 HOH A 104 2104 107 HOH HOH . J 6 HOH A 105 2105 108 HOH HOH . J 6 HOH A 106 2106 109 HOH HOH . J 6 HOH A 107 2107 110 HOH HOH . J 6 HOH A 108 2108 112 HOH HOH . J 6 HOH A 109 2109 113 HOH HOH . J 6 HOH A 110 2110 114 HOH HOH . J 6 HOH A 111 2111 115 HOH HOH . J 6 HOH A 112 2112 116 HOH HOH . J 6 HOH A 113 2113 119 HOH HOH . J 6 HOH A 114 2114 120 HOH HOH . J 6 HOH A 115 2115 121 HOH HOH . J 6 HOH A 116 2116 122 HOH HOH . J 6 HOH A 117 2117 123 HOH HOH . J 6 HOH A 118 2118 124 HOH HOH . J 6 HOH A 119 2119 125 HOH HOH . J 6 HOH A 120 2120 126 HOH HOH . J 6 HOH A 121 2121 127 HOH HOH . J 6 HOH A 122 2122 128 HOH HOH . J 6 HOH A 123 2123 129 HOH HOH . J 6 HOH A 124 2124 130 HOH HOH . J 6 HOH A 125 2125 131 HOH HOH . J 6 HOH A 126 2126 132 HOH HOH . J 6 HOH A 127 2127 133 HOH HOH . J 6 HOH A 128 2128 134 HOH HOH . J 6 HOH A 129 2129 135 HOH HOH . J 6 HOH A 130 2130 136 HOH HOH . J 6 HOH A 131 2131 137 HOH HOH . J 6 HOH A 132 2132 138 HOH HOH . J 6 HOH A 133 2133 139 HOH HOH . J 6 HOH A 134 2134 140 HOH HOH . J 6 HOH A 135 2135 141 HOH HOH . J 6 HOH A 136 2136 142 HOH HOH . J 6 HOH A 137 2137 143 HOH HOH . J 6 HOH A 138 2138 144 HOH HOH . J 6 HOH A 139 2139 145 HOH HOH . J 6 HOH A 140 2140 146 HOH HOH . J 6 HOH A 141 2141 147 HOH HOH . J 6 HOH A 142 2142 148 HOH HOH . J 6 HOH A 143 2143 149 HOH HOH . J 6 HOH A 144 2144 150 HOH HOH . J 6 HOH A 145 2145 151 HOH HOH . J 6 HOH A 146 2146 152 HOH HOH . J 6 HOH A 147 2147 154 HOH HOH . J 6 HOH A 148 2148 155 HOH HOH . J 6 HOH A 149 2149 156 HOH HOH . J 6 HOH A 150 2150 157 HOH HOH . J 6 HOH A 151 2151 158 HOH HOH . J 6 HOH A 152 2152 159 HOH HOH . J 6 HOH A 153 2153 160 HOH HOH . J 6 HOH A 154 2154 161 HOH HOH . J 6 HOH A 155 2155 162 HOH HOH . J 6 HOH A 156 2156 163 HOH HOH . J 6 HOH A 157 2157 166 HOH HOH . J 6 HOH A 158 2158 167 HOH HOH . J 6 HOH A 159 2159 168 HOH HOH . J 6 HOH A 160 2160 169 HOH HOH . J 6 HOH A 161 2161 170 HOH HOH . J 6 HOH A 162 2162 171 HOH HOH . J 6 HOH A 163 2163 172 HOH HOH . J 6 HOH A 164 2164 173 HOH HOH . J 6 HOH A 165 2165 174 HOH HOH . J 6 HOH A 166 2166 175 HOH HOH . J 6 HOH A 167 2167 176 HOH HOH . J 6 HOH A 168 2168 177 HOH HOH . K 6 HOH B 1 201 39 HOH HOH . K 6 HOH B 2 202 40 HOH HOH . K 6 HOH B 3 203 111 HOH HOH . K 6 HOH B 4 204 117 HOH HOH . K 6 HOH B 5 205 118 HOH HOH . K 6 HOH B 6 206 153 HOH HOH . K 6 HOH B 7 207 164 HOH HOH . K 6 HOH B 8 208 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . H 4 -9.719 47.923 46.632 1 85.11 ? C1 PGO 1906 A 1 HETATM 2 C C2 PGO . . . H 4 -9.258 46.623 47.253 1 85.94 ? C2 PGO 1906 A 1 HETATM 3 C C3 PGO . . . H 4 -10.461 45.784 47.629 1 83.85 ? C3 PGO 1906 A 1 HETATM 4 O O1 PGO . . . H 4 -8.607 48.7 46.247 1 85.83 ? O1 PGO 1906 A 1 HETATM 5 O O2 PGO . . . H 4 -8.532 46.895 48.424 1 89.03 ? O2 PGO 1906 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #